Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCA9	10350	genome.wustl.edu	37	17	66982354	66982354	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	66982354	66982354	C	T	SNP	ABCA9	NM_080283	human	genbank	57_37b	-1	reviewed	missense	c.4159	p.A1387T	0.503	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	-	no_errors	
ABCG5	64240	genome.wustl.edu	37	2	44052105	44052105	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	44052105	44052105	G	A	SNP	ABCG5	NM_022436	human	genbank	57_37b	-1	reviewed	missense	c.827	p.T276M	0.001	superfamily_SSF52540	PatternScan_ABC_TRANSPORTER_1,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_ABC_tran,HMMPfam_ABC2_membrane	-	no_errors	
AHNAK2	113146	genome.wustl.edu	37	14	105415953	105415953	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	105415953	105415953	G	A	SNP	AHNAK2	NM_138420	human	genbank	57_37b	-1	validated	silent	c.5835	p.P1945	0.000	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_Involucrin	-	no_errors	
AMACR	23600	genome.wustl.edu	37	5	34008100	34008100	+	Missense_Mutation	SNP	C	C	T	rs3195676	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A8-A06U-01	TCGA-A8-A06U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	34008100	34008100	C	T	SNP	AMACR	NM_014324	human	genbank	57_37b	-1	reviewed	missense	c.25	p.V9M	0.000	superfamily_CoA-transferase family III (CaiB/BaiF),PatternScan_ALDEHYDE_DEHYDR_GLU	superfamily_CoA-transferase family III (CaiB/BaiF),PatternScan_ALDEHYDE_DEHYDR_GLU,HMMPfam_CoA_transf_3	-		
BTK	695	genome.wustl.edu	37	X	100613405	100613405	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	100613405	100613405	C	T	SNP	BTK	NM_000061	human	genbank	57_37b	-1	reviewed	missense	c.995	p.R332H	1.000	superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMSmart_BTK,HMMPfam_BTK,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
C1orf124	83932	genome.wustl.edu	37	1	231488908	231488908	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	231488908	231488908	A	G	SNP	C1orf124	NM_032018	human	genbank	57_37b	+1	validated	missense	c.1271	p.K424R	0.639	NULL	HMMPfam_SprT-like,HMMSmart_SM00731,HMMSmart_SM00734	-	no_errors	
CHD2	1106	genome.wustl.edu	37	15	93545466	93545466	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	93545466	93545466	G	A	SNP	CHD2	NM_001271	human	genbank	57_37b	+1	reviewed	silent	c.4197	p.E1399	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00298,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Chromo,PatternScan_CHROMO_1,superfamily_Chromo domain-like,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,superfamily_Homeodomain-like	-	no_errors	
CNTNAP1	8506	genome.wustl.edu	37	17	40847561	40847561	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	40847561	40847561	G	A	SNP	CNTNAP1	NM_003632	human	genbank	57_37b	+1	reviewed	silent	c.3015	p.P1005	0.019	superfamily_ConA_like_lec_gl	PatternScan_FIBRIN_AG_C_DOMAIN,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_FA58C,superfamily_Gal_bind_like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMSmart_EGF,HMMPfam_EGF,superfamily_Fibrinogen_a/b/g_C,HMMSmart_FBG,HMMSmart_4.1m	-	no_errors	
DAB2IP	153090	genome.wustl.edu	37	9	124521225	124521225	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	124521225	124521225	G	A	SNP	DAB2IP	NM_032552	human	genbank	57_37b	+1	validated	missense	c.481	p.E161K	1.000	HMMSmart_SM00233,superfamily_PH domain-like,HMMPfam_PH,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMSmart_SM00233,superfamily_PH domain-like,HMMPfam_PH,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1	-	no_errors	
DENND1B	163486	genome.wustl.edu	37	1	197611863	197611863	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	197611863	197611863	A	C	SNP	DENND1B	NM_001142795	human	genbank	57_37b	-1	validated	missense	c.590	p.I197S	1.000	HMMPfam_DENN,HMMSmart_SM00799	HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801	-	no_errors	
DNAH11	8701	genome.wustl.edu	37	7	21744132	21744132	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	21744132	21744132	T	C	SNP	DNAH11	NM_003777	human	genbank	57_37b	+1	reviewed	silent	c.6375	p.G2125	0.995	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_AAA_5,PatternScan_WD_REPEATS_1,HMMPfam_Dynein_heavy	-	no_errors	
DOCK8	81704	genome.wustl.edu	37	9	429793	429793	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	429793	429793	C	-	DEL	DOCK8	NM_203447	human	genbank	57_37b	+1	validated	frame_shift_del	c.4361	p.R1455fs	1.000	NULL	HMMPfam_Ded_cyto	(deletion:cds_exon[429702,429854])	no_errors	
ENSG00000181950	0	genome.wustl.edu	37	11	55235114	55235114	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	55235114	55235114	T	C	SNP	ENSG00000181950	ENST00000314689	human	ensembl	57_37b	+1	known	missense	c.583	p.S195P	0.001	superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
ENSG00000219061	0	genome.wustl.edu	37	11	49854765	49854765	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	49854765	49854765	C	A	SNP	ENSG00000219061	ENST00000405176	human	ensembl	57_37b	-1	known	missense	c.1289	p.S430I	0.114	HMMPfam_SPRY,PatternScan_SERPIN	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMPfam_SPRY,PatternScan_SERPIN	-	no_errors	
ENSG00000227891	0	genome.wustl.edu	37	1	154728449	154728449	+	Silent	SNP	G	G	A	rs114092549	by1000genomes	TCGA-A8-A06U-01	TCGA-A8-A06U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	154728449	154728449	G	A	SNP	ENSG00000227891	ENST00000430415	human	ensembl	57_37b	+1	known	silent	c.255	p.V85	0.038	NULL	NULL	-		
ENSG00000246966	0	genome.wustl.edu	37	12	70914045	70914046	+	RNA	INS	-	-	AAGT	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	70914045	70914046	-	AAGT	INS	ENSG00000246966	ENST00000501222	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.023:0.026	-	-	-	no_errors	
F13A1	2162	genome.wustl.edu	37	6	6206822	6206822	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	6206822	6206822	G	A	SNP	F13A1	ENST00000379960	human	ensembl	57_37b	-1	known	missense	c.331	p.P111S	0.008	HMMSmart_SM00460	superfamily_Cysteine proteinases,HMMSmart_SM00460,HMMPfam_Transglut_core,PatternScan_TRANSGLUTAMINASES	-	no_errors	
FCGBP	8857	genome.wustl.edu	37	19	40374034	40374034	+	Missense_Mutation	SNP	A	G	G	rs3746009	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-A8-A06U-01	TCGA-A8-A06U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	40374034	40374034	A	G	SNP	FCGBP	NM_003890	human	genbank	57_37b	-1	validated	missense	c.12044	p.V4015A	0.000	HMMPfam_TIL_assoc,HMMSmart_VWC	HMMSmart_FOLN,HMMSmart_VWD,HMMPfam_VWD,HMMPfam_C8,superfamily_Cysrich_TIL,HMMPfam_TIL,HMMPfam_TIL_assoc,HMMSmart_VWC	-		
FUT2	2524	genome.wustl.edu	37	19	49206810	49206810	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49206810	49206810	T	C	SNP	FUT2	NM_000511	human	genbank	57_37b	+1	reviewed	silent	c.597	p.H199	0.990	HMMPfam_Glyco_transf_11	HMMPfam_Glyco_transf_11	-	no_errors	
GJA10	84694	genome.wustl.edu	37	6	90604250	90604250	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	90604250	90604250	G	T	SNP	GJA10	NM_032602	human	genbank	57_37b	+1	validated	silent	c.63	p.V21	1.000	HMMPfam_Connexin	HMMPfam_Connexin,HMMSmart_CNX,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2	-	no_errors	
GPR98	84059	genome.wustl.edu	37	5	90050985	90050985	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	90050985	90050985	G	A	SNP	GPR98	NM_032119	human	genbank	57_37b	+1	reviewed	missense	c.11563	p.E3855K	0.009	NULL	HMMSmart_SM00237,HMMPfam_Calx-beta,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EPTP,PatternScan_A_DEAMINASE,PatternScan_LIPOYL,HMMPfam_GPS	-	no_errors	
HERC2	8924	genome.wustl.edu	37	15	28421694	28421694	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	28421694	28421694	C	T	SNP	HERC2	NM_004667	human	genbank	57_37b	-1	reviewed	missense	c.9566	p.G3189E	1.000	superfamily_RCC1/BLIP-II,HMMPfam_RCC1	superfamily_RCC1/BLIP-II,HMMPfam_RCC1,HMMSmart_SM00706,superfamily_Cytochrome b5-like heme/steroid binding domain,HMMPfam_Cyt-b5,HMMPfam_MIB_HERC2,HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,superfamily_Galactose-binding domain-like,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RCC1_2,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors	
HERC2	8924	genome.wustl.edu	37	15	28518115	28518115	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	28518115	28518115	C	A	SNP	HERC2	NM_004667	human	genbank	57_37b	-1	reviewed	missense	c.836	p.G279V	1.000	NULL	HMMPfam_RCC1,PatternScan_RCC1_2,HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMPfam_Cyt-b5,superfamily_Cytochrome b5-like heme/steroid binding domain,HMMSmart_SM00706,superfamily_Galactose-binding domain-like,superfamily_RCC1/BLIP-II,HMMPfam_MIB_HERC2,PatternScan_PROTEIN_KINASE_ATP	-	no_errors	
HERC5	51191	genome.wustl.edu	37	4	89390392	89390392	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	89390392	89390392	C	T	SNP	HERC5	NM_016323	human	genbank	57_37b	+1	reviewed	missense	c.1219	p.R407W	0.204	NULL	superfamily_RCC1/BLIP-II,PatternScan_RCC1_2,HMMPfam_RCC1,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors	
HPS5	11234	genome.wustl.edu	37	11	18339303	18339303	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	18339303	18339303	G	C	SNP	HPS5	NM_181507	human	genbank	57_37b	-1	reviewed	missense	c.103	p.L35V	1.000	NULL	superfamily_WD40 repeat-like	-	no_errors	
HTR1F	3355	genome.wustl.edu	37	3	88039975	88039975	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	88039975	88039975	G	C	SNP	HTR1F	NM_000866	human	genbank	57_37b	+1	validated	missense	c.76	p.V26L	0.970	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
KCNJ12	3768	genome.wustl.edu	37	17	21318698	21318698	+	Missense_Mutation	SNP	C	C	T	rs1657738	byCluster;byFrequency;by1000genomes	TCGA-A8-A06U-01	TCGA-A8-A06U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	21318698	21318698	C	T	SNP	KCNJ12	NM_021012	human	genbank	57_37b	+1	validated	missense	c.44	p.S15L	0.996	HMMPfam_IRK_N	HMMPfam_IRK_N,superfamily_SSF81324,HMMPfam_IRK,superfamily_Ig_E-set	-		
KIAA1377	57562	genome.wustl.edu	37	11	101829065	101829065	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	101829065	101829065	C	A	SNP	KIAA1377	NM_020802	human	genbank	57_37b	+1	validated	missense	c.673	p.L225I	0.998	NULL	NULL	-	no_errors	
KRT35	3886	genome.wustl.edu	37	17	39637093	39637093	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	39637093	39637093	C	T	SNP	KRT35	NM_002280	human	genbank	57_37b	-1	reviewed	missense	c.257	p.G86D	1.000	NULL	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	-	no_errors	
KRTAP10-8	386681	genome.wustl.edu	37	21	46032028	46032028	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	46032028	46032028	C	T	SNP	KRTAP10-8	NM_198695	human	genbank	57_37b	+1	validated	missense	c.11	p.A4V	0.844	NULL	HMMPfam_Keratin_B2	-	no_errors	
LOC100288996	0	genome.wustl.edu	37	15	57976920	57976920	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	57976920	57976920	A	C	SNP	LOC100288996	XM_002343365	human	genbank	57_37b	-1	model	missense	c.371	p.V124G	0.000	NULL	NULL	-	no_errors	
LRP4	4038	genome.wustl.edu	37	11	46880600	46880600	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	46880600	46880600	T	C	SNP	LRP4	NM_002334	human	genbank	57_37b	-1	validated	silent	c.5652	p.R1884	0.999	NULL	superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,HMMSmart_SM00181,superfamily_EGF/Laminin,HMMPfam_EGF,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b	-	no_errors	
LYZL4	131375	genome.wustl.edu	37	3	42448361	42448361	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	42448361	42448361	T	G	SNP	LYZL4	NM_144634	human	genbank	57_37b	-1	provisional	missense	c.269	p.N90T	1.000	HMMPfam_Lys,HMMSmart_LYZ1,superfamily_SSF53955	HMMPfam_Lys,HMMSmart_LYZ1,superfamily_SSF53955,PatternScan_LACTALBUMIN_LYSOZYME_1	-	no_errors	
MYH4	4622	genome.wustl.edu	37	17	10366448	10366448	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	10366448	10366448	A	G	SNP	MYH4	NM_017533	human	genbank	57_37b	-1	validated	missense	c.863	p.I288T	1.000	superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head	HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_Myosin_tail_1	-	no_errors	
NIN	51199	genome.wustl.edu	37	14	51288724	51288724	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	51288724	51288724	A	C	SNP	NIN	NM_020921	human	genbank	57_37b	-1	reviewed	missense	c.51	p.F17L	1.000	superfamily_EF-hand,HMMPfam_efhand	superfamily_EF-hand,HMMPfam_efhand	-	no_errors	
OCIAD1	54940	genome.wustl.edu	37	4	48835499	48835499	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	48835499	48835499	G	A	SNP	OCIAD1	NM_001079839	human	genbank	57_37b	+1	validated	splice_site	c.139+1	e2+1	1.000	-	-	-	no_errors	
ODZ4	26011	genome.wustl.edu	37	11	78412585	78412585	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	78412585	78412585	C	T	SNP	ODZ4	NM_001098816	human	genbank	57_37b	-1	validated	nonsense	c.5073	p.W1691*	1.000	superfamily_TolB_C,HMMPfam_RHS_repeat	HMMPfam_Ten_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_EGF,HMMPfam_EGF_2,superfamily_SSF57196,superfamily_SSF101898,superfamily_TolB_C,HMMPfam_NHL,HMMPfam_RHS_repeat	-	no_errors	
PCDH15	65217	genome.wustl.edu	37	10	55582296	55582296	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	55582296	55582296	A	G	SNP	PCDH15	NM_001142763	human	genbank	57_37b	-1	reviewed	silent	c.5211	p.I1737	0.009	NULL	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like,HMMPfam_Cadherin	-	no_errors	
PCDHGA12	26025	genome.wustl.edu	37	5	140811927	140811927	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140811927	140811927	C	T	SNP	PCDHGA12	NM_003735	human	genbank	57_37b	+1	reviewed	missense	c.1601	p.A534V	0.995	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	G	G			TCGA-A8-A06U-01	TCGA-A8-A06U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PTGFR	5737	genome.wustl.edu	37	1	78958991	78958991	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	78958991	78958991	A	C	SNP	PTGFR	NM_000959	human	genbank	57_37b	+1	reviewed	missense	c.563	p.Y188S	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
RFC1	5981	genome.wustl.edu	37	4	39314522	39314522	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	39314522	39314522	T	C	SNP	RFC1	NM_002913	human	genbank	57_37b	-1	reviewed	missense	c.1233	p.I411M	0.105	superfamily_BRCT,HMMPfam_BRCT,HMMSmart_BRCT	superfamily_BRCT,HMMPfam_BRCT,HMMSmart_BRCT,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA,superfamily_Pol_clamp_load_C,HMMPfam_RFC1	-	no_errors	
RFPL1S	10740	genome.wustl.edu	37	22	29834086	29834086	+	RNA	DEL	C	C	-	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	29834086	29834086	C	-	DEL	RFPL1S	NR_002727	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.041	-	-	(deletion:rna[29833004,29838118])	no_errors	
RHEB	6009	genome.wustl.edu	37	7	151188068	151188068	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	151188068	151188068	C	T	SNP	RHEB	NM_005614	human	genbank	57_37b	-1	reviewed	missense	c.85	p.G29S	1.000	HMMSmart_RAS,superfamily_SSF52540,HMMPfam_Ras	HMMSmart_RAS,superfamily_SSF52540,HMMPfam_Ras	-	no_errors	
SGK196	84197	genome.wustl.edu	37	8	42977743	42977743	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	42977743	42977743	T	C	SNP	SGK196	NM_032237	human	genbank	57_37b	+1	validated	missense	c.776	p.L259P	1.000	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr	-	no_errors	
SIRPG	55423	genome.wustl.edu	37	20	1610939	1610939	+	Silent	SNP	G	A	A	rs3746722	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A8-A06U-01	TCGA-A8-A06U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	1610939	1610939	G	A	SNP	SIRPG	NM_018556	human	genbank	57_37b	-1	reviewed	silent	c.1095	p.S365	0.000	NULL	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406,HMMPfam_C1-set,HMMSmart_SM00407	-		
SLC12A1	6557	genome.wustl.edu	37	15	48580714	48580714	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	48580714	48580714	G	A	SNP	SLC12A1	NM_000338	human	genbank	57_37b	+1	validated	splice_site	c.2873+1	e22+1	1.000	-	-	-	no_errors	
SLC35F1	222553	genome.wustl.edu	37	6	118556692	118556692	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	118556692	118556692	A	C	SNP	SLC35F1	NM_001029858	human	genbank	57_37b	+1	validated	missense	c.370	p.I124L	1.000	HMMPfam_DUF914	HMMPfam_DUF914	-	no_errors	
SPTB	6710	genome.wustl.edu	37	14	65216860	65216862	+	In_Frame_Del	DEL	GTT	GTT	-	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	GTT	GTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	65216860	65216862	GTT	-	DEL	SPTB	NM_001024858	human	genbank	57_37b	-1	reviewed	in_frame_del	c.6615_6613	p.N2205in_frame_del	0.994:1.000:1.000	HMMSmart_SPEC,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	(deletion:cds_exon[65216699,65216872])	no_errors	
SSH3	54961	genome.wustl.edu	37	11	67077326	67077326	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	67077326	67077326	C	T	SNP	SSH3	NM_017857	human	genbank	57_37b	+1	validated	silent	c.1296	p.Y432	0.797	superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_DSPc,HMMSmart_SM00195	HMMPfam_DEK_C,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_DSPc,HMMSmart_SM00195,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
SYMPK	8189	genome.wustl.edu	37	19	46332317	46332317	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46332317	46332317	G	A	SNP	SYMPK	NM_004819	human	genbank	57_37b	-1	reviewed	silent	c.1896	p.A632	0.152	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors	
TBX18	9096	genome.wustl.edu	37	6	85448248	85448248	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	85448248	85448248	T	G	SNP	TBX18	NM_001080508	human	genbank	57_37b	-1	provisional	missense	c.1066	p.T356P	1.000	NULL	superfamily_P53_like_DNA_bnd,HMMSmart_TBOX,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2	-	no_errors	
TEKT5	146279	genome.wustl.edu	37	16	10788482	10788482	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	10788482	10788482	G	A	SNP	TEKT5	NM_144674	human	genbank	57_37b	-1	provisional	silent	c.249	p.S83	0.000	NULL	HMMPfam_Tektin	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7578222	7578223	+	Frame_Shift_Del	DEL	TC	TC	-	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578222	7578223	TC	-	DEL	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.627_626	p.R209fs	0.000:0.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7578177,7578289])	no_errors	
TPR	7175	genome.wustl.edu	37	1	186315302	186315302	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	186315302	186315302	C	G	SNP	TPR	NM_003292	human	genbank	57_37b	-1	reviewed	missense	c.3061	p.D1021H	1.000	superfamily_Prefoldin	superfamily_Prefoldin,HMMPfam_TPR_MLP1_2	-	no_errors	
TRIM65	201292	genome.wustl.edu	37	17	73886888	73886888	+	Missense_Mutation	SNP	A	G	G	rs3760128	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A8-A06U-01	TCGA-A8-A06U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	73886888	73886888	A	G	SNP	TRIM65	NM_173547	human	genbank	57_37b	-1	validated	missense	c.1526	p.L509P	0.000	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMPfam_SPRY,HMMSmart_SM00449	-		
TSPO2	222642	genome.wustl.edu	37	6	41011722	41011722	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	41011722	41011722	C	T	SNP	TSPO2	NM_001010873	human	genbank	57_37b	+1	validated	missense	c.359	p.T120I	0.007	HMMPfam_TspO_MBR	HMMPfam_TspO_MBR	-	no_errors	
TTN	7273	genome.wustl.edu	37	2	179408032	179408032	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179408032	179408032	C	T	SNP	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	nonsense	c.88958	p.W29653*	1.000	HMMSmart_SM00060,HMMPfam_fn3	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
TTN	7273	genome.wustl.edu	37	2	179442793	179442793	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179442793	179442793	G	A	SNP	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	nonsense	c.60739	p.R20247*	1.000	HMMPfam_fn3,HMMSmart_SM00060	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors	
TXLNB	167838	genome.wustl.edu	37	6	139563701	139563701	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	139563701	139563701	G	A	SNP	TXLNB	NM_153235	human	genbank	57_37b	-1	validated	missense	c.2017	p.R673C	0.016	NULL	HMMPfam_Taxilin	-	no_errors	
UPF2	26019	genome.wustl.edu	37	10	12071392	12071392	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	12071392	12071392	G	C	SNP	UPF2	NM_015542	human	genbank	57_37b	-1	reviewed	nonsense	c.497	p.S166*	1.000	NULL	HMMSmart_SM00543,HMMPfam_MIF4G,superfamily_ARM repeat,HMMPfam_Upf2	-	no_errors	
UPP1	7378	genome.wustl.edu	37	7	48147911	48147911	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	48147911	48147911	G	A	SNP	UPP1	NM_003364	human	genbank	57_37b	+1	validated	missense	c.890	p.R297Q	0.938	superfamily_Purine and uridine phosphorylases,HMMPfam_PNP_UDP_1	superfamily_Purine and uridine phosphorylases,HMMPfam_PNP_UDP_1,PatternScan_PNP_UDP_1	-	no_errors	
ZNF728	388523	genome.wustl.edu	37	19	23185831	23185831	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	23185831	23185831	A	T	SNP	ZNF728	XM_001726961	human	genbank	57_37b	-1	model	missense	c.2	p.M1K	0.148	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355	-	no_errors	
ZNF831	128611	genome.wustl.edu	37	20	57769143	57769143	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A06U-01	TCGA-A8-A06U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	57769143	57769143	G	A	SNP	ZNF831	NM_178457	human	genbank	57_37b	+1	provisional	silent	c.3069	p.G1023	0.011	NULL	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
