Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
APLP1	333	genome.wustl.edu	37	19	36370038	36370038	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A08X-01	TCGA-A8-A08X-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	36370038	36370038	C	T	SNP	APLP1	NM_001024807	human	genbank	57_37b	+1	reviewed	silent	c.1776	p.G592	0.674	NULL	HMMPfam_A4_EXTRA,HMMSmart_SM00006,superfamily_A heparin-binding domain,superfamily_Amyloid beta a4 protein copper binding domain (domain 2),PatternScan_A4_EXTRA,superfamily_CAPPD an extracellular domain of amyloid beta A4 protein,HMMPfam_APP_amyloid,PatternScan_A4_INTRA	-	no_errors	
C10orf81	79949	genome.wustl.edu	37	10	115540376	115540376	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A08X-01	TCGA-A8-A08X-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	115540376	115540376	A	G	SNP	C10orf81	ENST00000369312	human	ensembl	57_37b	+1	known	missense	c.937	p.I313V	0.994	NULL	NULL	-	no_errors	
C14orf115	55237	genome.wustl.edu	37	14	74824804	74824804	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08X-01	TCGA-A8-A08X-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	74824804	74824804	C	T	SNP	C14orf115	NM_018228	human	genbank	57_37b	+1	validated	missense	c.1318	p.R440W	1.000	NULL	HMMPfam_Transposase_8	-	no_errors	
COX6C	1345	genome.wustl.edu	37	8	100899792	100899792	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A08X-01	TCGA-A8-A08X-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	100899792	100899792	C	A	SNP	COX6C	NM_004374	human	genbank	57_37b	-1	reviewed	missense	c.169	p.D57Y	1.000	HMMPfam_COX6C,superfamily_Mitochondrial cytochrome c oxidase subunit VIc	HMMPfam_COX6C,superfamily_Mitochondrial cytochrome c oxidase subunit VIc	-	no_errors	
CRHR1	1394	genome.wustl.edu	37	17	43912159	43912159	+	Missense_Mutation	SNP	G	G	C	rs16940681	byCluster;byFrequency	TCGA-A8-A08X-01	TCGA-A8-A08X-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	43912159	43912159	G	C	SNP	CRHR1	ENST00000339069	human	ensembl	57_37b	+1	known	missense	c.838	p.E280Q	0.000	NULL	HMMPfam_7tm_2	-		
DLC1	10395	genome.wustl.edu	37	8	12957977	12957977	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A08X-01	TCGA-A8-A08X-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	12957977	12957977	G	A	SNP	DLC1	NM_182643	human	genbank	57_37b	-1	reviewed	silent	c.1869	p.S623	0.998	NULL	HMMPfam_SAM_2,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_Bet v1-like,HMMPfam_START,HMMSmart_SM00234	-	no_errors	
ENSG00000225802	0	genome.wustl.edu	37	11	59022865	59022865	+	Missense_Mutation	SNP	G	A	A	rs4938915	byCluster;byFrequency;by1000genomes	TCGA-A8-A08X-01	TCGA-A8-A08X-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	59022865	59022865	G	A	SNP	ENSG00000225802	ENST00000455673	human	ensembl	57_37b	+1	known	missense	c.25	p.A9T	1.000	superfamily_Nucleotidylyl transferase	superfamily_Nucleotidylyl transferase	-		
FCAR	2204	genome.wustl.edu	37	19	55401124	55401124	+	Silent	SNP	G	G	A	rs77103719	byCluster;byFrequency;by1000genomes	TCGA-A8-A08X-01	TCGA-A8-A08X-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55401124	55401124	G	A	SNP	FCAR	NM_002000	human	genbank	57_37b	+1	reviewed	silent	c.759	p.T253	0.000	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig	-		
FCRL1	115350	genome.wustl.edu	37	1	157773658	157773658	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08X-01	TCGA-A8-A08X-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	157773658	157773658	C	T	SNP	FCRL1	NM_052938	human	genbank	57_37b	-1	reviewed	missense	c.296	p.R99K	0.000	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors	
FNDC3A	22862	genome.wustl.edu	37	13	49712942	49712945	+	Splice_Site	DEL	GTAA	GTAA	-	novel	unknown	TCGA-A8-A08X-01	TCGA-A8-A08X-01	GTAA	GTAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	49712942	49712945	GTAA	-	DEL	FNDC3A	NM_001079673	human	genbank	57_37b	+1	validated	splice_site_del	c.819+1_819+1	e6+1	1.000:1.000:1.000:1.000	-	-	(deletion:intron[49712942,49719913])	no_errors	
IL12RB1	3594	genome.wustl.edu	37	19	18186597	18186597	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08X-01	TCGA-A8-A08X-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	18186597	18186597	G	A	SNP	IL12RB1	NM_005535	human	genbank	57_37b	-1	reviewed	missense	c.662	p.S221F	0.627	superfamily_Fibronectin type III	PatternScan_N6_MTASE,superfamily_Fibronectin type III,PatternScan_HEMATOPO_REC_L_F2,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
LOC100133111	0	genome.wustl.edu	37	7	6715548	6715548	+	RNA	SNP	A	A	G	rs74362890	byCluster;by1000genomes	TCGA-A8-A08X-01	TCGA-A8-A08X-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	6715548	6715548	A	G	SNP	LOC100133111	XR_078354	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.989	-	-	-		
MAN2A1	4124	genome.wustl.edu	37	5	109091135	109091135	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A8-A08X-01	TCGA-A8-A08X-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	109091135	109091135	T	C	SNP	MAN2A1	NM_002372	human	genbank	57_37b	+1	reviewed	silent	c.813	p.H271	1.000	superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38	superfamily_Glyco_hydro/deAcase_b/a-brl,HMMPfam_Glyco_hydro_38,superfamily_SSF88688,HMMPfam_Alpha-mann_mid,superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C	-	no_errors	
PAEP	5047	genome.wustl.edu	37	9	138456155	138456155	+	Missense_Mutation	SNP	C	C	A	rs74725576	unknown	TCGA-A8-A08X-01	TCGA-A8-A08X-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	138456155	138456155	C	A	SNP	PAEP	NM_001018049	human	genbank	57_37b	+1	reviewed	missense	c.376	p.Q126K	0.001	superfamily_Lipocalins,HMMPfam_Lipocalin	superfamily_Lipocalins,PatternScan_LIPOCALIN,HMMPfam_Lipocalin	-		
PDS5B	23047	genome.wustl.edu	37	13	33233398	33233398	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A08X-01	TCGA-A8-A08X-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	33233398	33233398	A	T	SNP	PDS5B	NM_015032	human	genbank	57_37b	+1	validated	missense	c.605	p.N202I	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT,HMMPfam_AT_hook	-	no_errors	
PLIN3	10226	genome.wustl.edu	37	19	4859937	4859937	+	Missense_Mutation	SNP	T	C	C	rs8289	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A8-A08X-01	TCGA-A8-A08X-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	4859937	4859937	T	C	SNP	PLIN3	NM_005817	human	genbank	57_37b	-1	reviewed	missense	c.166	p.I56V	0.012	HMMPfam_Perilipin	HMMPfam_Perilipin,superfamily_Mannose-6-phosphate receptor binding protein 1 (Tip47) C-terminal domain	-		
POLE2	5427	genome.wustl.edu	37	14	50122403	50122403	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08X-01	TCGA-A8-A08X-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	50122403	50122403	C	T	SNP	POLE2	NM_002692	human	genbank	57_37b	-1	provisional	missense	c.914	p.R305H	0.996	HMMPfam_DNA_pol_E_B	HMMPfam_DNA_pol_E_B	-	no_errors	
RPP30	10556	genome.wustl.edu	37	10	92654535	92654535	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A08X-01	TCGA-A8-A08X-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	92654535	92654535	A	G	SNP	RPP30	NM_001104546	human	genbank	57_37b	+1	validated	missense	c.436	p.I146V	1.000	superfamily_PHP domain-like,HMMPfam_RNase_P_p30	superfamily_PHP domain-like,HMMPfam_RNase_P_p30	-	no_errors	
SERPINE1	5054	genome.wustl.edu	37	7	100776989	100776989	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A08X-01	TCGA-A8-A08X-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100776989	100776989	G	A	SNP	SERPINE1	NM_000602	human	genbank	57_37b	+1	reviewed	silent	c.714	p.T238	0.706	HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN	HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN,PatternScan_SERPIN	-	no_errors	
STAC	6769	genome.wustl.edu	37	3	36534691	36534691	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08X-01	TCGA-A8-A08X-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	36534691	36534691	G	A	SNP	STAC	NM_003149	human	genbank	57_37b	+1	provisional	missense	c.736	p.G246R	0.000	NULL	HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_Cysteine-rich domain,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_SH3_2	-	no_errors	
STAP1	26228	genome.wustl.edu	37	4	68449419	68449419	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A08X-01	TCGA-A8-A08X-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	68449419	68449419	G	C	SNP	STAP1	NM_012108	human	genbank	57_37b	+1	reviewed	missense	c.658	p.D220H	1.000	superfamily_SH2 domain,HMMSmart_SM00252	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH2 domain,HMMSmart_SM00252	-	no_errors	
SVIL	6840	genome.wustl.edu	37	10	29813441	29813441	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08X-01	TCGA-A8-A08X-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	29813441	29813441	C	T	SNP	SVIL	NM_021738	human	genbank	57_37b	-1	reviewed	missense	c.2546	p.R849H	1.000	NULL	superfamily_Actin depolymerizing proteins,HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_VHP Villin headpiece domain,HMMPfam_VHP,HMMSmart_SM00153	-	no_errors	
TET3	200424	genome.wustl.edu	37	2	74275539	74275539	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-A8-A08X-01	TCGA-A8-A08X-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	74275539	74275539	G	A	SNP	TET3	NM_144993	human	genbank	57_37b	+1	provisional	splice_site	c.2089+1	e1+1	1.000	-	-	-	no_errors	
TEX13B	56156	genome.wustl.edu	37	X	107224730	107224730	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A08X-01	TCGA-A8-A08X-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	107224730	107224730	G	A	SNP	TEX13B	NM_031273	human	genbank	57_37b	-1	reviewed	silent	c.519	p.A173	0.000	NULL	NULL	-	no_errors	
TMEM110	375346	genome.wustl.edu	37	3	52876847	52876847	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A8-A08X-01	TCGA-A8-A08X-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	52876847	52876847	G	-	DEL	TMEM110	NM_198563	human	genbank	57_37b	-1	provisional	frame_shift_del	c.748	p.H250fs	1.000	NULL	NULL	(deletion:cds_exon[52876827,52876976])	no_errors	
TP53	7157	genome.wustl.edu	37	17	7578403	7578403	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A08X-01	TCGA-A8-A08X-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578403	7578403	C	A	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.527	p.C176F	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
