Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCC8	6833	genome.wustl.edu	37	11	17415836	17415836	+	Missense_Mutation	SNP	T	T	G	rs80075294	by1000genomes	TCGA-A8-A097-01	TCGA-A8-A097-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	17415836	17415836	T	G	SNP	ABCC8	NM_000352	human	genbank	57_37b	-1	reviewed	missense	c.4522	p.T1508P	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-		
AFM	173	genome.wustl.edu	37	4	74363407	74363407	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	74363407	74363407	G	T	SNP	AFM	NM_001133	human	genbank	57_37b	+1	reviewed	missense	c.1230	p.K410N	0.002	superfamily_Serum albumin-like,HMMSmart_SM00103	HMMSmart_SM00103,HMMPfam_Serum_albumin,superfamily_Serum albumin-like,PatternScan_ALBUMIN	-	no_errors	
AKR1E2	83592	genome.wustl.edu	37	10	4884037	4884037	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	4884037	4884037	G	A	SNP	AKR1E2	NM_001040177	human	genbank	57_37b	+1	provisional	silent	c.741	p.K247	0.991	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase,PatternScan_ALDOKETO_REDUCTASE_1,PatternScan_ALDOKETO_REDUCTASE_2	-	no_errors	
AMPD1	270	genome.wustl.edu	37	1	115223067	115223067	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	115223067	115223067	G	C	SNP	AMPD1	NM_000036	human	genbank	57_37b	-1	reviewed	missense	c.580	p.P194A	1.000	NULL	superfamily_SSF51556,HMMPfam_A_deaminase,PatternScan_A_DEAMINASE	-	no_errors	
AP1B1	162	genome.wustl.edu	37	22	29726496	29726496	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	29726496	29726496	G	C	SNP	AP1B1	NM_001127	human	genbank	57_37b	-1	reviewed	missense	c.2637	p.S879R	0.998	superfamily_Subdomain of clathrin and coatomer appendage domain,HMMPfam_B2-adapt-app_C	superfamily_ARM repeat,HMMPfam_Adaptin_N,HMMSmart_SM00185,superfamily_Clathrin adaptor appendage domain,HMMSmart_SM00809,HMMPfam_Alpha_adaptinC2,superfamily_Subdomain of clathrin and coatomer appendage domain,HMMPfam_B2-adapt-app_C	-	no_errors	
ARPC1A	10552	genome.wustl.edu	37	7	98942068	98942068	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	98942068	98942068	G	C	SNP	ARPC1A	NM_006409	human	genbank	57_37b	+1	reviewed	missense	c.322	p.E108Q	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors	
BIRC6	57448	genome.wustl.edu	37	2	32824821	32824821	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	32824821	32824821	C	A	SNP	BIRC6	NM_016252	human	genbank	57_37b	+1	reviewed	missense	c.13846	p.P4616T	1.000	superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con	superfamily_Inhibitor of apoptosis (IAP) repeat,HMMSmart_SM00238,HMMPfam_BIR,superfamily_Galactose-binding domain-like,superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con	-	no_errors	
C10orf18	54906	genome.wustl.edu	37	10	5800903	5800903	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	5800903	5800903	T	C	SNP	C10orf18	NM_017782	human	genbank	57_37b	+1	validated	missense	c.6940	p.W2314R	1.000	NULL	NULL	-	no_errors	
C4orf17	84103	genome.wustl.edu	37	4	100461586	100461586	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	100461586	100461586	C	G	SNP	C4orf17	NM_032149	human	genbank	57_37b	+1	validated	missense	c.854	p.S285C	0.992	NULL	NULL	-	no_errors	
CACNA1F	778	genome.wustl.edu	37	X	49065756	49065756	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	49065756	49065756	T	G	SNP	CACNA1F	NM_005183	human	genbank	57_37b	-1	reviewed	missense	c.4952	p.E1651A	0.733	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors	
CDH10	1008	genome.wustl.edu	37	5	24511481	24511481	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	24511481	24511481	G	A	SNP	CDH10	NM_006727	human	genbank	57_37b	-1	reviewed	silent	c.957	p.I319	0.007	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	superfamily_Cadherin,HMMSmart_CA,HMMPfam_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors	
CLPTM1	1209	genome.wustl.edu	37	19	45490564	45490564	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	45490564	45490564	C	G	SNP	CLPTM1	NM_001294	human	genbank	57_37b	+1	provisional	missense	c.921	p.F307L	1.000	HMMPfam_CLPTM1	HMMPfam_CLPTM1	-	no_errors	
COL16A1	1307	genome.wustl.edu	37	1	32149769	32149769	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	32149769	32149769	C	A	SNP	COL16A1	NM_001856	human	genbank	57_37b	-1	reviewed	missense	c.2224	p.G742W	1.000	NULL	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen	-	no_errors	
COL9A3	1299	genome.wustl.edu	37	20	61467606	61467606	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	61467606	61467606	G	C	SNP	COL9A3	NM_001853	human	genbank	57_37b	+1	reviewed	missense	c.1469	p.G490A	0.999	HMMPfam_Collagen	HMMPfam_Collagen	-	no_errors	
CUX1	1523	genome.wustl.edu	37	7	101844882	101844882	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	101844882	101844882	G	-	DEL	CUX1	NM_181552	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.2305	p.A769fs	0.000	NULL	superfamily_lambda repressor-like DNA-binding domains,HMMPfam_CUT,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	(deletion:cds_exon[101844640,101845484])	no_errors	
CXorf56	63932	genome.wustl.edu	37	X	118694273	118694273	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	118694273	118694273	T	G	SNP	CXorf56	NM_022101	human	genbank	57_37b	-1	validated	missense	c.200	p.K67T	1.000	NULL	NULL	-	no_errors	
DBC1	1620	genome.wustl.edu	37	9	122075479	122075479	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	122075479	122075479	C	A	SNP	DBC1	NM_014618	human	genbank	57_37b	-1	validated	missense	c.155	p.R52M	1.000	NULL	HMMSmart_SM00457	-	no_errors	
DMXL2	23312	genome.wustl.edu	37	15	51783884	51783884	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	51783884	51783884	T	C	SNP	DMXL2	NM_015263	human	genbank	57_37b	-1	validated	missense	c.4844	p.N1615S	1.000	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors	
DNAH3	55567	genome.wustl.edu	37	16	21011634	21011634	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	21011634	21011634	C	T	SNP	DNAH3	NM_017539	human	genbank	57_37b	-1	provisional	silent	c.6333	p.Q2111	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_Prefoldin,HMMPfam_Dynein_heavy	-	no_errors	
DNAJC10	54431	genome.wustl.edu	37	2	183597233	183597233	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	183597233	183597233	G	A	SNP	DNAJC10	NM_018981	human	genbank	57_37b	+1	provisional	silent	c.813	p.L271	1.000	superfamily_Thioredoxin-like	superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ,superfamily_Thioredoxin-like,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1	-	no_errors	
DNMT1	1786	genome.wustl.edu	37	19	10250460	10250460	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	10250460	10250460	G	T	SNP	DNMT1	NM_001130823	human	genbank	57_37b	-1	reviewed	silent	c.3840	p.L1280	0.842	superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_DNA_methylase	HMMPfam_DMAP_binding,HMMPfam_zf-CXXC,HMMPfam_BAH,HMMSmart_SM00439,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_DNA_methylase,PatternScan_C5_MTASE_1,PatternScan_C5_MTASE_2	-	no_errors	
DPAGT1	1798	genome.wustl.edu	37	11	118967894	118967894	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	118967894	118967894	G	-	DEL	DPAGT1	NM_001382	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.1119	p.I374fs	0.987	NULL	HMMPfam_Glycos_transf_4	(deletion:cds_exon[118967852,118968007])	no_errors	
ENSG00000175985	0	genome.wustl.edu	37	14	69967295	69967295	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	69967295	69967295	G	T	SNP	ENSG00000175985	ENST00000322564	human	ensembl	57_37b	+1	known	missense	c.245	p.G82V	1.000	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors	
ENSG00000247791	0	genome.wustl.edu	37	21	40555160	40555160	+	RNA	SNP	C	G	G	rs34294410	byCluster;byFrequency;by1000genomes	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	40555160	40555160	C	G	SNP	ENSG00000247791	ENST00000501058	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-		
ESRRB	2103	genome.wustl.edu	37	14	76964655	76964655	+	Missense_Mutation	SNP	C	T	T	rs61742642	byCluster;byFrequency;by1000genomes	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	76964655	76964655	C	T	SNP	ESRRB	NM_004452	human	genbank	57_37b	+1	reviewed	missense	c.1156	p.P386S	1.000	superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	superfamily_SSF57716,HMMSmart_ZnF_C4,HMMPfam_zf-C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	-		
FAM190B	54462	genome.wustl.edu	37	10	86259685	86259685	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	86259685	86259685	C	A	SNP	FAM190B	NM_018999	human	genbank	57_37b	+1	validated	missense	c.2380	p.P794T	1.000	NULL	NULL	-	no_errors	
FLJ43826	342666	genome.wustl.edu	37	17	37185764	37185764	+	RNA	SNP	A	A	G	rs11868358	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A8-A097-01	TCGA-A8-A097-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	37185764	37185764	A	G	SNP	FLJ43826	XR_040620	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.000	-	-	-		
GPR125	166647	genome.wustl.edu	37	4	22438206	22438206	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	22438206	22438206	C	G	SNP	GPR125	NM_145290	human	genbank	57_37b	-1	validated	missense	c.1144	p.G382R	0.797	superfamily_Immunoglobulin,superfamily_Hormone receptor domain (HRM Pfam 02793)	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Immunoglobulin,HMMSmart_SM00409,superfamily_Hormone receptor domain (HRM Pfam 02793),HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2	-	no_errors	
GPR151	134391	genome.wustl.edu	37	5	145895382	145895382	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	145895382	145895382	A	G	SNP	GPR151	NM_194251	human	genbank	57_37b	-1	provisional	missense	c.295	p.Y99H	1.000	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
GPR27	2850	genome.wustl.edu	37	3	71804099	71804099	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	71804099	71804099	A	G	SNP	GPR27	NM_018971	human	genbank	57_37b	+1	provisional	missense	c.899	p.Y300C	1.000	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
GRM3	2913	genome.wustl.edu	37	7	86468645	86468645	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	86468645	86468645	C	T	SNP	GRM3	NM_000840	human	genbank	57_37b	+1	reviewed	silent	c.1815	p.P605	0.356	HMMPfam_7tm_3	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3	-	no_errors	
GUCY2D	3000	genome.wustl.edu	37	17	7912874	7912874	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7912874	7912874	C	T	SNP	GUCY2D	NM_000180	human	genbank	57_37b	+1	reviewed	silent	c.1719	p.I573	0.999	superfamily_Kinase_like	superfamily_SSF53822,HMMPfam_ANF_receptor,superfamily_Kinase_like,HMMPfam_Pkinase,HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors	
HIST1H3C	8352	genome.wustl.edu	37	6	26045934	26045939	+	In_Frame_Del	DEL	CCTACC	CCTACC	-	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	CCTACC	CCTACC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26045934	26045939	CCTACC	-	DEL	HIST1H3C	NM_003531	human	genbank	57_37b	+1	reviewed	in_frame_del	c.296_301	p.AYL99in_frame_delV	1.000:1.000:1.000:1.000:1.000:1.000	superfamily_Histone-fold,HMMSmart_SM00428,HMMPfam_Histone	superfamily_Histone-fold,PatternScan_HISTONE_H3_1,HMMSmart_SM00428,HMMPfam_Histone,PatternScan_HISTONE_H3_2	(deletion:cds_exon[26045639,26046049])	no_errors	
HIST1H3C	8352	genome.wustl.edu	37	6	26045942	26045948	+	Frame_Shift_Del	DEL	GTGGGAC	GTGGGAC	-	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	GTGGGAC	GTGGGAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26045942	26045948	GTGGGAC	-	DEL	HIST1H3C	NM_003531	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.304_310	p.V102fs	1.000:1.000:1.000:1.000:1.000:0.961:1.000	HMMSmart_SM00428,HMMPfam_Histone,superfamily_Histone-fold	HMMSmart_SM00428,PatternScan_HISTONE_H3_1,PatternScan_HISTONE_H3_2,HMMPfam_Histone,superfamily_Histone-fold	(deletion:cds_exon[26045639,26046049])	no_errors	
IL13RA2	3598	genome.wustl.edu	37	X	114242507	114242507	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	114242507	114242507	G	T	SNP	IL13RA2	NM_000640	human	genbank	57_37b	-1	reviewed	missense	c.985	p.Q329K	0.000	superfamily_FN_III-like	superfamily_FN_III-like,HMMPfam_Haemat_rec_S_F2,PatternScan_HEMATOPO_REC_S_F2	-	no_errors	
IL1RL1	9173	genome.wustl.edu	37	2	102964505	102964505	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	102964505	102964505	C	A	SNP	IL1RL1	NM_016232	human	genbank	57_37b	+1	reviewed	silent	c.1071	p.A357	0.001	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255,HMMPfam_TIR	-	no_errors	
INTU	27152	genome.wustl.edu	37	4	128565122	128565122	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	128565122	128565122	G	A	SNP	INTU	NM_015693	human	genbank	57_37b	+1	provisional	missense	c.593	p.R198K	0.931	HMMSmart_SM00228	HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors	
IRF1	3659	genome.wustl.edu	37	5	131823647	131823647	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	131823647	131823647	C	T	SNP	IRF1	NM_002198	human	genbank	57_37b	-1	reviewed	missense	c.158	p.C53Y	1.000	"HMMSmart_SM00348,HMMPfam_IRF,superfamily_""Winged helix"" DNA-binding domain,PatternScan_IRF"	"HMMSmart_SM00348,HMMPfam_IRF,superfamily_""Winged helix"" DNA-binding domain,PatternScan_IRF"	-	no_errors	
KCNC4	3749	genome.wustl.edu	37	1	110766559	110766559	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	110766559	110766559	C	T	SNP	KCNC4	NM_153763	human	genbank	57_37b	+1	reviewed	missense	c.1652	p.P551L	0.000	NULL	superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans	-	no_errors	
KDR	3791	genome.wustl.edu	37	4	55980407	55980407	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	55980407	55980407	C	G	SNP	KDR	NM_002253	human	genbank	57_37b	-1	reviewed	silent	c.684	p.L228	1.000	superfamily_SSF48726,HMMPfam_V-set	superfamily_SSF48726,HMMSmart_IG,HMMPfam_V-set,HMMPfam_I-set,HMMSmart_IGc2,HMMPfam_ig,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
KIAA1107	23285	genome.wustl.edu	37	1	92642676	92642676	+	Silent	SNP	A	A	C	rs74578702	byFrequency;by1000genomes	TCGA-A8-A097-01	TCGA-A8-A097-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	92642676	92642676	A	C	SNP	KIAA1107	NM_015237	human	genbank	57_37b	+1	validated	silent	c.612	p.T204	1.000	NULL	NULL	-		
KLHL14	57565	genome.wustl.edu	37	18	30267172	30267172	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	30267172	30267172	C	G	SNP	KLHL14	NM_020805	human	genbank	57_37b	-1	provisional	missense	c.1184	p.S395T	1.000	superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMSmart_Kelch,HMMPfam_Kelch_1	-	no_errors	
KLK2	3817	genome.wustl.edu	37	19	51381748	51381748	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51381748	51381748	C	T	SNP	KLK2	NM_005551	human	genbank	57_37b	+1	validated	missense	c.719	p.P240L	0.960	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors	
KRTAP10-6	386674	genome.wustl.edu	37	21	46011700	46011700	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	46011700	46011700	G	A	SNP	KRTAP10-6	NM_198688	human	genbank	57_37b	-1	validated	silent	c.666	p.S222	0.041	NULL	NULL	-	no_errors	
LOC100287698	0	genome.wustl.edu	37	16	3779642	3779642	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	3779642	3779642	C	G	SNP	LOC100287698	XM_002343412	human	genbank	57_37b	+1	model	missense	c.63	p.C21W	0.991	NULL	NULL	-	no_errors	
LOC100288024	0	genome.wustl.edu	37	X	53221858	53221858	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	53221858	53221858	C	A	SNP	LOC100288024	XM_002344194	human	genbank	57_37b	+1	model	missense	c.19	p.Q7K	0.381	NULL	NULL	-	no_errors	
LOC728047	728047	genome.wustl.edu	37	15	32743817	32743817	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	32743817	32743817	T	C	SNP	LOC728047	XM_001126912	human	genbank	57_37b	-1	model	silent	c.333	p.E111	0.009	NULL	NULL	-	no_errors	
LRRN1	57633	genome.wustl.edu	37	3	3887664	3887664	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	3887664	3887664	T	C	SNP	LRRN1	NM_020873	human	genbank	57_37b	+1	validated	missense	c.1339	p.C447R	1.000	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2	superfamily_SSF52058,HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,HMMPfam_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	-	no_errors	
MCPH1	79648	genome.wustl.edu	37	8	6335116	6335116	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	6335116	6335116	C	A	SNP	MCPH1	NM_024596	human	genbank	57_37b	+1	reviewed	missense	c.1937	p.P646Q	1.000	HMMSmart_SM00292	HMMPfam_BRCT,superfamily_BRCT domain,HMMSmart_SM00292	-	no_errors	
MICAL2	9645	genome.wustl.edu	37	11	12265628	12265628	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	12265628	12265628	C	G	SNP	MICAL2	NM_014632	human	genbank	57_37b	+1	provisional	nonsense	c.2753	p.S918*	0.120	NULL	superfamily_FAD/NAD(P)-binding domain,HMMPfam_FAD_binding_3,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	no_errors	
MLL4	9757	genome.wustl.edu	37	19	36218387	36218388	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	36218387	36218388	-	G	INS	MLL4	NM_014727	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.4166_4167	p.C1390fs	1.000:0.900	PatternScan_ZF_PHD_1,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD	HMMPfam_AT_hook,HMMPfam_zf-CXXC,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-	no_errors	
MMP3	4314	genome.wustl.edu	37	11	102712906	102712906	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	102712906	102712906	G	T	SNP	MMP3	NM_002422	human	genbank	57_37b	-1	reviewed	missense	c.604	p.Q202K	0.000	"HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M10"	"HMMPfam_PG_binding_1,superfamily_PGBD-like,PatternScan_CYSTEINE_SWITCH,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE,superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120,PatternScan_HEMOPEXIN"	-	no_errors	
MRPL51	51258	genome.wustl.edu	37	12	6601615	6601615	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	6601615	6601615	G	A	SNP	MRPL51	NM_016497	human	genbank	57_37b	-1	reviewed	missense	c.209	p.P70L	1.000	HMMPfam_MRP-L51	HMMPfam_MRP-L51	-	no_errors	
MRPS5	64969	genome.wustl.edu	37	2	95767455	95767455	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	95767455	95767455	C	T	SNP	MRPS5	ENST00000345084	human	ensembl	57_37b	-1	known	missense	c.686	p.G229E	1.000	NULL	NULL	-	no_errors	
NEK5	341676	genome.wustl.edu	37	13	52701610	52701610	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	52701610	52701610	C	A	SNP	NEK5	NM_199289	human	genbank	57_37b	-1	provisional	missense	c.9	p.K3N	0.986	superfamily_Kinase_like	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
NFKBIE	4794	genome.wustl.edu	37	6	44226961	44226961	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	44226961	44226961	C	G	SNP	NFKBIE	NM_004556	human	genbank	57_37b	-1	validated	missense	c.1498	p.D500H	0.994	NULL	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors	
NLRP1	22861	genome.wustl.edu	37	17	5436639	5436639	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	5436639	5436639	T	C	SNP	NLRP1	NM_033004	human	genbank	57_37b	-1	reviewed	missense	c.3118	p.I1040V	0.001	NULL	superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368,HMMPfam_LRR_1,HMMPfam_CARD	-	no_errors	
NLRP9	338321	genome.wustl.edu	37	19	56243391	56243391	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	56243391	56243391	A	G	SNP	NLRP9	NM_176820	human	genbank	57_37b	-1	reviewed	silent	c.1806	p.F602	0.001	superfamily_RNI-like	superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368,PatternScan_RIBOSOMAL_S2_1	-	no_errors	
NRCAM	4897	genome.wustl.edu	37	7	107824982	107824982	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	107824982	107824982	C	A	SNP	NRCAM	NM_001037132	human	genbank	57_37b	-1	reviewed	missense	c.2112	p.Q704H	0.989	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,PatternScan_IG_MHC,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
OAS3	4940	genome.wustl.edu	37	12	113388650	113388650	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	113388650	113388650	G	T	SNP	OAS3	NM_006187	human	genbank	57_37b	+1	reviewed	missense	c.1527	p.Q509H	0.000	superfamily_Nucleotidyltransferase	superfamily_Nucleotidyltransferase,PatternScan_25A_SYNTH_1,HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain,PatternScan_25A_SYNTH_2,HMMPfam_NTP_transf_2	-	no_errors	
OR51D1	390038	genome.wustl.edu	37	11	4661424	4661424	+	Missense_Mutation	SNP	G	G	A	rs61745314	by1000genomes	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	4661424	4661424	G	A	SNP	OR51D1	NM_001004751	human	genbank	57_37b	+1	validated	missense	c.404	p.R135H	1.000	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-		
PAPOLA	10914	genome.wustl.edu	37	14	96997870	96997870	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	96997870	96997870	G	T	SNP	PAPOLA	NM_032632	human	genbank	57_37b	+1	validated	missense	c.554	p.R185L	1.000	HMMPfam_PAP_central,superfamily_Nucleotidyltransferase	HMMPfam_PAP_central,superfamily_Nucleotidyltransferase,HMMPfam_NTP_transf_2,superfamily_PAP/OAS1 substrate-binding domain,superfamily_PAP/Archaeal CCA-adding enzyme C-terminal domain,HMMPfam_PAP_RNA-bind	-	no_errors	
PCDHB16	57717	genome.wustl.edu	37	5	140563393	140563393	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140563393	140563393	C	T	SNP	PCDHB16	NM_020957	human	genbank	57_37b	+1	reviewed	missense	c.1259	p.T420I	0.998	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMSmart_CA,HMMPfam_Cadherin	-	no_errors	
PCYT1A	5130	genome.wustl.edu	37	3	195968873	195968873	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	195968873	195968873	C	A	SNP	PCYT1A	NM_005017	human	genbank	57_37b	-1	provisional	missense	c.654	p.R218S	0.997	superfamily_SSF52374	superfamily_SSF52374,HMMPfam_CTP_transf_2	-	no_errors	
PECI	10455	genome.wustl.edu	37	6	4116163	4116163	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	4116163	4116163	G	C	SNP	PECI	NM_006117	human	genbank	57_37b	-1	validated	nonsense	c.1040	p.S347*	0.979	superfamily_SSF52096	HMMPfam_ACBP,superfamily_ACBP,PatternScan_ACB_1,superfamily_SSF52096,HMMPfam_ECH	-	no_errors	
PEF1	553115	genome.wustl.edu	37	1	32098853	32098853	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	32098853	32098853	G	C	SNP	PEF1	NM_012392	human	genbank	57_37b	-1	provisional	missense	c.388	p.H130D	1.000	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors	
PHF13	148479	genome.wustl.edu	37	1	6681554	6681554	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	6681554	6681554	A	C	SNP	PHF13	NM_153812	human	genbank	57_37b	+1	validated	missense	c.760	p.T254P	1.000	superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD	PatternScan_ZF_PHD_1,superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD	-	no_errors	
PHLPP1	23239	genome.wustl.edu	37	18	60384462	60384462	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	60384462	60384462	G	T	SNP	PHLPP1	NM_194449	human	genbank	57_37b	+1	validated	nonsense	c.10	p.E4*	1.000	NULL	HMMPfam_PH,superfamily_L domain-like,HMMSmart_SM00369,HMMSmart_SM00364,HMMPfam_LRR_1,HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C	-	no_errors	
PITRM1	10531	genome.wustl.edu	37	10	3189822	3189822	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	3189822	3189822	G	A	SNP	PITRM1	NM_014889	human	genbank	57_37b	-1	validated	missense	c.2177	p.A726V	1.000	HMMPfam_M16C_assoc,superfamily_LuxS/MPP-like metallohydrolase	superfamily_LuxS/MPP-like metallohydrolase,HMMPfam_Peptidase_M16_C,HMMPfam_M16C_assoc	-	no_errors	
PRMT3	10196	genome.wustl.edu	37	11	20529900	20529900	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	20529900	20529900	C	T	SNP	PRMT3	NM_005788	human	genbank	57_37b	+1	validated	missense	c.1537	p.R513C	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	PatternScan_ZINC_FINGER_C2H2_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_11	-	no_errors	
PRRG3	79057	genome.wustl.edu	37	X	150869481	150869481	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	150869481	150869481	C	A	SNP	PRRG3	NM_024082	human	genbank	57_37b	+1	validated	silent	c.672	p.A224	0.048	NULL	HMMSmart_GLA,superfamily_VitK_dep_GLA,HMMPfam_Gla,PatternScan_GLA_1	-	no_errors	
PTPRB	5787	genome.wustl.edu	37	12	70954712	70954712	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	70954712	70954712	G	T	SNP	PTPRB	NM_001109754	human	genbank	57_37b	-1	reviewed	missense	c.4171	p.P1391T	1.000	superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060	superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
PUF60	22827	genome.wustl.edu	37	8	144898861	144898861	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144898861	144898861	T	-	DEL	PUF60	NM_078480	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.1509	p.G504fs	1.000	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMSmart_SM00361	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMSmart_SM00361,HMMPfam_RRM_1	(deletion:cds_exon[144898690,144898989])	no_errors	
SAMD3	154075	genome.wustl.edu	37	6	130466530	130466530	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	130466530	130466530	A	T	SNP	SAMD3	NM_001017373	human	genbank	57_37b	-1	validated	missense	c.1233	p.D411E	1.000	NULL	superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors	
SERPINA1	5265	genome.wustl.edu	37	14	94849571	94849571	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	94849571	94849571	G	C	SNP	SERPINA1	NM_000295	human	genbank	57_37b	-1	reviewed	missense	c.4	p.P2A	0.756	NULL	superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN	-	no_errors	
SGK2	10110	genome.wustl.edu	37	20	42204866	42204866	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	42204866	42204866	G	A	SNP	SGK2	NM_016276	human	genbank	57_37b	+1	reviewed	silent	c.876	p.P292	0.281	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C	-	no_errors	
SLC16A2	6567	genome.wustl.edu	37	X	73641302	73641303	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	73641302	73641303	-	G	INS	SLC16A2	NM_006517	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.52_53	p.D19fs	1.000:1.000	NULL	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	-	no_errors	
SLC4A4	8671	genome.wustl.edu	37	4	72432765	72432765	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	72432765	72432765	T	A	SNP	SLC4A4	NM_001134742	human	genbank	57_37b	+1	reviewed	missense	c.3144	p.D1048E	1.000	NULL	superfamily_PTrfase/Anion_transptr,HMMPfam_Band_3_cyto,HMMPfam_HCO3_cotransp	-	no_errors	
SYT4	6860	genome.wustl.edu	37	18	40853980	40853980	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	40853980	40853980	A	T	SNP	SYT4	NM_020783	human	genbank	57_37b	-1	validated	missense	c.414	p.S138R	0.995	NULL	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors	
TCERG1	10915	genome.wustl.edu	37	5	145859431	145859431	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	145859431	145859431	G	A	SNP	TCERG1	NM_006706	human	genbank	57_37b	+1	reviewed	silent	c.1776	p.P592	0.948	NULL	superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_FF domain,HMMSmart_SM00441,HMMPfam_FF	-	no_errors	
TCHHL1	126637	genome.wustl.edu	37	1	152058564	152058564	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152058564	152058564	C	T	SNP	TCHHL1	NM_001008536	human	genbank	57_37b	-1	provisional	missense	c.1594	p.G532R	0.000	NULL	PatternScan_S100_CABP,superfamily_SSF47473,HMMPfam_S_100	-	no_errors	
TLR4	7099	genome.wustl.edu	37	9	120475977	120475977	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	120475977	120475977	T	A	SNP	TLR4	NM_138554	human	genbank	57_37b	+1	reviewed	missense	c.1571	p.V524E	0.000	superfamily_L domain-like,HMMSmart_SM00369	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00365,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255,HMMPfam_TIR	-	no_errors	
TMEM27	57393	genome.wustl.edu	37	X	15657865	15657865	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	15657865	15657865	C	T	SNP	TMEM27	NM_020665	human	genbank	57_37b	-1	reviewed	missense	c.332	p.R111Q	1.000	NULL	NULL	-	no_errors	
TNFRSF21	27242	genome.wustl.edu	37	6	47202544	47202544	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	47202544	47202544	C	T	SNP	TNFRSF21	NM_014452	human	genbank	57_37b	-1	reviewed	missense	c.1600	p.A534T	0.647	NULL	superfamily_SSF57586,HMMSmart_TNFR,PatternScan_TNFR_NGFR_1,HMMSmart_DEATH,superfamily_DEATH_like,HMMPfam_Death	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7577531	7577531	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7577531	7577531	G	-	DEL	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.750	p.I251fs	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7577499,7577608])	no_errors	
TRNAU1AP	54952	genome.wustl.edu	37	1	28904118	28904118	+	Silent	SNP	A	A	T	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	28904118	28904118	A	T	SNP	TRNAU1AP	NM_017846	human	genbank	57_37b	+1	validated	silent	c.834	p.T278	0.273	NULL	HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1	-	no_errors	
TTN	7273	genome.wustl.edu	37	2	179425922	179425922	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179425922	179425922	C	T	SNP	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	missense	c.77227	p.E25743K	1.000	HMMPfam_fn3,HMMSmart_SM00060	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
TTN	7273	genome.wustl.edu	37	2	179599535	179599535	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179599535	179599535	A	T	SNP	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	missense	c.11384	p.L3795H	0.969	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors	
WDR3	10885	genome.wustl.edu	37	1	118494625	118494625	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	118494625	118494625	C	T	SNP	WDR3	NM_006784	human	genbank	57_37b	+1	reviewed	silent	c.1830	p.S610	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMPfam_Utp12	-	no_errors	
WDR60	55112	genome.wustl.edu	37	7	158723189	158723189	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	158723189	158723189	G	C	SNP	WDR60	NM_018051	human	genbank	57_37b	+1	validated	silent	c.2529	p.L843	0.000	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors	
WWP2	11060	genome.wustl.edu	37	16	69921986	69921986	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	69921986	69921986	G	A	SNP	WWP2	NM_007014	human	genbank	57_37b	+1	reviewed	missense	c.748	p.V250I	0.670	NULL	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	-	no_errors	
ZFPL1	7542	genome.wustl.edu	37	11	64854242	64854242	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64854242	64854242	C	T	SNP	ZFPL1	NM_006782	human	genbank	57_37b	+1	validated	silent	c.459	p.F153	1.000	NULL	PatternScan_ZF_RING_1,HMMSmart_RING	-	no_errors	
ZFPL1	7542	genome.wustl.edu	37	11	64854532	64854532	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64854532	64854532	A	G	SNP	ZFPL1	NM_006782	human	genbank	57_37b	+1	validated	missense	c.614	p.E205G	0.991	NULL	HMMSmart_RING,PatternScan_ZF_RING_1	-	no_errors	
ZNF630	57232	genome.wustl.edu	37	X	47920304	47920304	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	47920304	47920304	A	G	SNP	ZNF630	NM_001037735	human	genbank	57_37b	-1	validated	silent	c.36	p.D12	0.956	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZSCAN16	80345	genome.wustl.edu	37	6	28093507	28093507	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	28093507	28093507	G	C	SNP	ZSCAN16	NM_025231	human	genbank	57_37b	+1	provisional	missense	c.286	p.D96H	0.854	HMMPfam_SCAN,HMMSmart_SCAN	HMMPfam_SCAN,HMMSmart_SCAN,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZSCAN29	146050	genome.wustl.edu	37	15	43658336	43658336	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A8-A097-01	TCGA-A8-A097-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	43658336	43658336	A	G	SNP	ZSCAN29	NM_152455	human	genbank	57_37b	-1	validated	silent	c.1194	p.A398	0.755	NULL	HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_MADF_DNA_bdg,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
