Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ELK3	2004	hgsc.bcm.edu	36	12	95165159	95165160	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005230	exon3	c.518_519insC	p.S173fs	.	.	.
MLPH	79083	hgsc.bcm.edu	36	2	238114277	238114278	+	Frame_Shift_Ins	INS	-	-	AA	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_001042467	exon10	c.1300_1301insAA	p.L434fs	.	.	.
DYSF	8291	hgsc.bcm.edu	36	2	71693304	71693305	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_001130981	exon39	c.4244_4245insC	p.C1415fs	.	.	.
MYL10	93408	hgsc.bcm.edu	36	7	101046234	101046234	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138403	exon6	c.C519T	p.F173F	.	.	.
NUP205	23165	hgsc.bcm.edu	36	7	134909051	134909051	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015135	exon3	c.C281A	p.A94D	.	.	.
CARD11	84433	hgsc.bcm.edu	36	7	2940647	2940647	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032415	exon10	c.C1484T	p.P495L	.	.	.
GUSB	2990	hgsc.bcm.edu	36	7	65082820	65082820	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000181	exon2	c.C222T	p.T74T	.	.	.
GTPBP10	85865	hgsc.bcm.edu	36	7	89839457	89839457	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033107	exon5	c.C517A	p.P173T	.	.	.
LAMB4	22798	hgsc.bcm.edu	36	7	107490563	107490565	+	In_Frame_Del	DEL	GCC	GCC	-	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	GCC	GCC	GCC	GCC	GCC	GCC	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_007356	exon23	c.3172_3174del	p.1058_1058del	.	.	.
NSFL1C	55968	hgsc.bcm.edu	36	20	1393068	1393068	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016143	exon2	c.G109A	p.A37T	.	.	.
SIRPD	128646	hgsc.bcm.edu	36	20	1465840	1465840	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178460	exon3	c.G538A	p.V180I	.	.	.
TTPAL	79183	hgsc.bcm.edu	36	20	42551494	42551494	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001039199	exon5	c.C927G	p.D309E	.	.	.
TSHZ2	128553	hgsc.bcm.edu	36	20	51305792	51305792	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173485	exon2	c.C2388T	p.A796A	.	.	.
PLCB1	23236	hgsc.bcm.edu	36	20	8644935	8644935	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182734	exon13	c.G1275A	p.A425A	.	.	.
COCH	1690	hgsc.bcm.edu	36	14	30424984	30424984	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004086	exon11	c.G1192A	p.E398K	.	.	.
EGLN3	112399	hgsc.bcm.edu	36	14	33468150	33468150	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022073	exon3	c.G497A	p.R166Q	.	.	.
EP300	2033	hgsc.bcm.edu	36	22	39866139	39866139	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001429	exon9	c.C1810G	p.R604G	.	.	.
KDELR1	10945	hgsc.bcm.edu	36	19	53584628	53584628	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006801	exon3	c.T345C	p.P115P	.	.	.
ZNF350	59348	hgsc.bcm.edu	36	19	57160589	57160589	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021632	exon5	c.G929A	p.R310Q	.	.	.
PEG3	5178	hgsc.bcm.edu	36	19	62018862	62018862	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001146186	exon7	c.C2760T	p.G920G	.	.	.
STAP2	55620	hgsc.bcm.edu	36	19	4283051	4283052	+	Frame_Shift_Del	DEL	TT	TT	-	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	TT	TT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001013841	exon4	c.321_322del	p.107_108del	.	.	.
CTSB	1508	hgsc.bcm.edu	36	8	11740660	11740660	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_147781	exon10	c.C841A	p.R281S	.	.	.
TEX15	56154	hgsc.bcm.edu	36	8	30822290	30822290	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031271	exon1	c.G3786A	p.A1262A	.	.	.
CRISPLD1	83690	hgsc.bcm.edu	36	8	76104203	76104203	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031461	exon14	c.A1347G	p.V449V	.	.	.
CRP	1401	hgsc.bcm.edu	36	1	157950190	157950190	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_000567	exon2	c.G424T	p.G142X	.	.	.
SPEN	23013	hgsc.bcm.edu	36	1	16130883	16130883	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015001	exon11	c.G5561A	p.R1854Q	.	.	.
CFHR5	81494	hgsc.bcm.edu	36	1	195218675	195218675	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_030787	exon2	c.T96A	p.F32L	.	.	.
PLEKHA6	22874	hgsc.bcm.edu	36	1	202483130	202483130	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014935	exon13	c.A1906C	p.N636H	.	.	.
SPATA17	128153	hgsc.bcm.edu	36	1	216022176	216022176	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_138796	exon8	c.G761A	p.R254H	.	.	.
CATSPER4	378807	hgsc.bcm.edu	36	1	26390379	26390379	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_198137	exon2	c.G228A	p.M76I	.	.	.
KIAA0467	23334	hgsc.bcm.edu	36	1	43680548	43680548	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015284	exon42	c.C5199G	p.F1733L	.	.	.
CYP4A22	284541	hgsc.bcm.edu	36	1	47379076	47379076	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001010969	exon2	c.G233A	p.R78Q	.	.	.
HOOK1	51361	hgsc.bcm.edu	36	1	60098557	60098557	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015888	exon15	c.C1501A	p.R501S	.	.	.
GBP4	115361	hgsc.bcm.edu	36	1	89431623	89431623	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052941	exon4	c.G424A	p.V142I	.	.	.
PAP2D	163404	hgsc.bcm.edu	36	1	99153048	99153048	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001037317	exon5	c.A815T	p.N272I	.	.	.
CRP	1401	hgsc.bcm.edu	36	1	157949974	157949976	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	CTT	CTT	CTT	CTT	CTT	CTT	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_000567	exon2	c.638_640del	p.213_214del	.	.	.
RAB39	54734	hgsc.bcm.edu	36	11	107337998	107337998	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017516	exon2	c.T344C	p.V115A	.	.	.
ATM	472	hgsc.bcm.edu	36	11	107655493	107655493	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000051	exon23	c.A3350C	p.Q1117P	.	.	.
TECTA	7007	hgsc.bcm.edu	36	11	120501590	120501590	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005422	exon7	c.G1573A	p.G525S	.	.	.
C11orf63	79864	hgsc.bcm.edu	36	11	122322572	122322572	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024806	exon6	c.G1791T	p.L597L	.	.	.
ABCC8	6833	hgsc.bcm.edu	36	11	17420912	17420912	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000352	exon10	c.C1561T	p.R521W	.	.	.
OR4A5	81318	hgsc.bcm.edu	36	11	51268273	51268273	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005272	exon1	c.C699T	p.A233A	.	.	.
OLFML1	283298	hgsc.bcm.edu	36	11	7487736	7487736	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_198474	exon3	c.C950T	p.A317V	.	.	.
SIM1	6492	hgsc.bcm.edu	36	6	100948212	100948212	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005068	exon10	c.C1442T	p.T481M	.	.	.
AGPAT4	56895	hgsc.bcm.edu	36	6	161487590	161487590	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020133	exon7	c.G799A	p.D267N	.	.	.
CAP2	10486	hgsc.bcm.edu	36	6	17622112	17622112	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006366	exon7	c.T584G	p.L195R	.	.	.
ITPR3	3710	hgsc.bcm.edu	36	6	33743657	33743657	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002224	exon16	c.G1824A	p.K608K	.	.	.
BAI3	577	hgsc.bcm.edu	36	6	69703196	69703196	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001704	exon5	c.G933A	p.S311S	.	.	.
MAP2K3	5606	hgsc.bcm.edu	36	17	21157439	21157439	+	Silent	SNP	G	G	C	rs1657688	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002756	exon11	c.G870C	p.L290L	.	.	.
ARSG	22901	hgsc.bcm.edu	36	17	63902899	63902899	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014960	exon10	c.G1182T	p.V394V	.	.	.
SOX9	6662	hgsc.bcm.edu	36	17	67631839	67631839	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000346	exon3	c.C1246T	p.Q416X	.	.	.
BRWD1	54014	hgsc.bcm.edu	36	21	39504689	39504689	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033656	exon35	c.T3937C	p.Y1313H	.	.	.
IFT140	9742	hgsc.bcm.edu	36	16	1574324	1574324	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014714	exon11	c.C1254T	p.A418A	.	.	.
ERN2	10595	hgsc.bcm.edu	36	16	23611111	23611111	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_033266	exon18	c.T2287A	p.Y763N	.	.	.
PRKCB	5579	hgsc.bcm.edu	36	16	23951004	23951004	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_212535	exon4	c.C335T	p.P112L	.	.	.
SLC5A11	115584	hgsc.bcm.edu	36	16	24796099	24796099	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052944	exon7	c.C497T	p.A166V	.	.	.
MYST1	84148	hgsc.bcm.edu	36	16	31039166	31039166	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032188	exon3	c.C292T	p.R98W	.	.	.
BTBD12	84464	hgsc.bcm.edu	36	16	3587830	3587830	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032444	exon6	c.T1335G	p.S445R	.	.	.
KIAA1609	57707	hgsc.bcm.edu	36	16	83073776	83073776	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020947	exon6	c.G1000T	p.A334S	.	.	.
LAMA1	284217	hgsc.bcm.edu	36	18	6966058	6966058	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005559	exon45	c.G6367C	p.D2123H	.	.	.
PCCB	5096	hgsc.bcm.edu	36	3	137528704	137528704	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001178014	exon13	c.G1276A	p.G426R	.	.	.
RBP1	5947	hgsc.bcm.edu	36	3	140719196	140719196	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002899	exon4	c.G557A	p.G186D	.	.	.
CHST2	9435	hgsc.bcm.edu	36	3	144323652	144323652	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_004267	exon2	c.C1304G	p.T435R	.	.	.
STT3B	201595	hgsc.bcm.edu	36	3	31613323	31613323	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_178862	exon4	c.T741G	p.F247L	.	.	.
ACACB	32	hgsc.bcm.edu	36	12	108182753	108182753	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001093	exon47	c.G6582A	p.P2194P	.	.	.
KRAS	3845	hgsc.bcm.edu	36	12	25289549	25289549	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_004985	exon2	c.G37T	p.G13C	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,-2	.	.
TROAP	10024	hgsc.bcm.edu	36	12	48011431	48011431	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005480	exon14	c.A2266T	p.T756S	.	.	.
SLC16A7	9194	hgsc.bcm.edu	36	12	58451316	58451316	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004731	exon3	c.G267C	p.V89V	.	.	.
GABRB3	2562	hgsc.bcm.edu	36	15	24357398	24357398	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_021912	exon8	c.C854T	p.T285I	.	.	.
BLM	641	hgsc.bcm.edu	36	15	89134949	89134949	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000057	exon15	c.G2890A	p.A964T	.	.	.
UNC45A	55898	hgsc.bcm.edu	36	15	89289207	89289207	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_001039675	exon12	c.G1064A	p.S355N	.	.	.
SLC10A6	345274	hgsc.bcm.edu	36	4	87965698	87965698	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_197965	exon5	c.T818G	p.M273R	.	.	.
HSD17B13	345275	hgsc.bcm.edu	36	4	88457271	88457271	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001136230	exon2	c.T339G	p.F113L	.	.	.
DRD5	1816	hgsc.bcm.edu	36	4	9393785	9393785	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_000798	exon1	c.T1034C	p.V345A	.	.	.
ACSL4	2182	hgsc.bcm.edu	36	X	108813328	108813328	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022977	exon4	c.T44C	p.V15A	.	.	.
MAGEA8	4107	hgsc.bcm.edu	36	X	148773944	148773944	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001166401	exon3	c.G240T	p.W80C	.	.	.
KLHL34	257240	hgsc.bcm.edu	36	X	21584286	21584286	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153270	exon1	c.C1542T	p.T514T	.	.	.
IL1RAPL1	11141	hgsc.bcm.edu	36	X	29211246	29211246	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014271	exon3	c.G353A	p.C118Y	.	.	.
GATA1	2623	hgsc.bcm.edu	36	X	48535256	48535256	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002049	exon3	c.C282T	p.A94A	.	.	.
PQBP1	10084	hgsc.bcm.edu	36	X	48640754	48640754	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001167992	exon1	c.G18A	p.A6A	.	.	.
GRIPAP1	56850	hgsc.bcm.edu	36	X	48732360	48732360	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020137	exon7	c.G564A	p.P188P	.	.	.
FAM123B	139285	hgsc.bcm.edu	36	X	63328820	63328820	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152424	exon2	c.C1072T	p.R358X	.	.	.
AR	367	hgsc.bcm.edu	36	X	66858441	66858441	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001011645	exon6	c.G764A	p.R255Q	.	.	.
ATRX	546	hgsc.bcm.edu	36	X	76700891	76700891	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000489	exon29	c.G6409A	p.A2137T	.	.	.
CYLC1	1538	hgsc.bcm.edu	36	X	83015638	83015638	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021118	exon4	c.A1266G	p.E422E	.	.	.
FAM133A	286499	hgsc.bcm.edu	36	X	92851114	92851114	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001171110	exon5	c.A40T	p.I14L	.	.	.
ARHGEF4	50649	hgsc.bcm.edu	36	2	131515932	131515932	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015320	exon10	c.G1412T	p.R471I	.	.	.
PGAP1	80055	hgsc.bcm.edu	36	2	197445444	197445444	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024989	exon18	c.T1694G	p.F565C	.	.	.
ABCA12	26154	hgsc.bcm.edu	36	2	215517989	215517989	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173076	exon49	c.G7324A	p.V2442I	.	.	.
ABCA12	26154	hgsc.bcm.edu	36	2	215592361	215592361	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173076	exon13	c.C1601T	p.P534L	.	.	.
ASB1	51665	hgsc.bcm.edu	36	2	239007039	239007039	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001040445	exon2	c.C155T	p.T52I	.	.	.
ACVR2A	92	hgsc.bcm.edu	36	2	148400156	148400157	+	Frame_Shift_Del	DEL	AA	AA	-	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	AA	AA	AA	AA	AA	AA	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_001616	exon10	c.1303_1304del	p.435_435del	.	.	.
COBRA1	25920	hgsc.bcm.edu	36	9	139281325	139281325	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_015456	exon9	c.T1204C	p.S402P	.	.	.
COBRA1	25920	hgsc.bcm.edu	36	9	139281329	139281329	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015456	exon9	c.A1208T	p.Y403F	.	.	.
TRPM3	80036	hgsc.bcm.edu	36	9	72667698	72667698	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001007471	exon3	c.G408A	p.T136T	.	.	.
RORB	6096	hgsc.bcm.edu	36	9	76490306	76490306	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006914	exon10	c.G1332A	p.P444P	.	.	.
FGF14	2259	hgsc.bcm.edu	36	13	101173255	101173255	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_175929	exon5	c.C686T	p.T229M	.	.	.
MYO16	23026	hgsc.bcm.edu	36	13	108177846	108177846	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001198950	exon4	c.G421A	p.V141I	.	.	.
NOLC1	9221	hgsc.bcm.edu	36	10	103911655	103911655	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_004741	exon12	c.A1924T	p.N642Y	.	.	.
IDI2	91734	hgsc.bcm.edu	36	10	1055458	1055458	+	Silent	SNP	C	C	T	rs17851563	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033261	exon5	c.G683A	p.X228X	.	.	.
C10orf81	79949	hgsc.bcm.edu	36	10	115518598	115518598	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001193435	exon4	c.T130A	p.S44T	.	.	.
ANK3	288	hgsc.bcm.edu	36	10	61504264	61504264	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020987	exon37	c.C6381G	p.D2127E	.	.	.
EGR2	1959	hgsc.bcm.edu	36	10	64243898	64243898	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000399	exon2	c.C506T	p.P169L	.	.	.
APC	324	hgsc.bcm.edu	36	5	112202872	112202872	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127511	exon14	c.C3628T	p.Q1210X	.	.	.
KDM3B	51780	hgsc.bcm.edu	36	5	137736346	137736346	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016604	exon2	c.G277A	p.E93K	.	.	.
SLC45A2	51151	hgsc.bcm.edu	36	5	33980570	33980570	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016180	exon7	c.G1533A	p.A511A	.	.	.
ECHS1	1892	hgsc.bcm.edu	36	10	135028151	135028151	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-AA-3527-01	TCGA-AA-3527-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	.	.	.	.	.	.	.
