Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
NOD1	10392	hgsc.bcm.edu	36	7	30459151	30459152	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_006092	exon6	c.407_408insT	p.H136fs	.	.	.
C1orf113	79729	hgsc.bcm.edu	36	1	36558936	36558937	+	In_Frame_Ins	INS	-	-	GAG	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001162530	exon14	c.2085_2086insGAG	p.G695delinsGE	.	.	.
OPN1SW	611	hgsc.bcm.edu	36	7	128202286	128202286	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001708	exon2	c.G511T	p.G171C	.	.	.
AKR1B10	57016	hgsc.bcm.edu	36	7	133868361	133868361	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020299	exon4	c.G417A	p.L139L	.	.	.
CRYGN	155051	hgsc.bcm.edu	36	7	150766252	150766252	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144727	exon2	c.T33A	p.Y11X	.	.	.
AP4M1	9179	hgsc.bcm.edu	36	7	99541073	99541073	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004722	exon11	c.G904C	p.V302L	.	.	.
CDH4	1002	hgsc.bcm.edu	36	20	59882305	59882305	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001794	exon7	c.G1004A	p.S335N	.	.	.
LARGE	9215	hgsc.bcm.edu	36	22	32030433	32030433	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133642	exon12	c.C1512T	p.Y504Y	.	.	.
QTRT1	81890	hgsc.bcm.edu	36	19	10673845	10673845	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031209	exon3	c.G366T	p.E122D	.	.	.
MAG	4099	hgsc.bcm.edu	36	19	40485324	40485324	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199216	exon7	c.G1029A	p.T343T	.	.	.
FSD1	79187	hgsc.bcm.edu	36	19	4262908	4262908	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024333	exon7	c.G560T	p.R187L	.	.	.
ZNF543	125919	hgsc.bcm.edu	36	19	62531664	62531664	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_213598	exon4	c.G1022A	p.C341Y	.	.	.
ODF1	4956	hgsc.bcm.edu	36	8	103641863	103641863	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024410	exon2	c.A328G	p.R110G	.	.	.
COL14A1	7373	hgsc.bcm.edu	36	8	121423850	121423850	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021110	exon44	c.C4872T	p.C1624C	.	.	.
TNFRSF10B	8795	hgsc.bcm.edu	36	8	22936143	22936143	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_003842	exon9	c.T1309A	p.S437T	.	.	.
IMPA1	3612	hgsc.bcm.edu	36	8	82755543	82755543	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001144879	exon3	c.A94T	p.N32Y	.	.	.
SLC6A17	388662	hgsc.bcm.edu	36	1	110536281	110536281	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001010898	exon7	c.G1029A	p.T343T	.	.	.
NRAS	4893	hgsc.bcm.edu	36	1	115058053	115058053	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002524	exon3	c.C181A	p.Q61K	NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.
UBE2Q1	55585	hgsc.bcm.edu	36	1	152792135	152792135	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017582	exon5	c.A726C	p.L242F	.	.	.
TMCC2	9911	hgsc.bcm.edu	36	1	203505562	203505562	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014858	exon3	c.A1609T	p.M537L	.	.	.
PRKCZ	5590	hgsc.bcm.edu	36	1	2072225	2072225	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_002744	exon9	c.A824C	p.D275A	.	.	.
HEATR1	55127	hgsc.bcm.edu	36	1	234801369	234801369	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018072	exon28	c.G3853A	p.V1285M	.	.	.
PTPRF	5792	hgsc.bcm.edu	36	1	43829251	43829251	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_130440	exon9	c.A971C	p.D324A	.	.	.
SLC44A5	204962	hgsc.bcm.edu	36	1	75457595	75457595	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152697	exon16	c.C1201G	p.P401A	.	.	.
ADAM15	8751	hgsc.bcm.edu	36	1	153299876	153299876	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_207195	exon19	c.G2221A	p.G741S	ADAM15,central_nervous_system,brain,Substitution - Missense,-1	.	.
QSK	23387	hgsc.bcm.edu	36	11	116273211	116273211	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025164	exon5	c.C475A	p.Q159K	.	.	.
OR51B2	79345	hgsc.bcm.edu	36	11	5301482	5301482	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_033180	exon1	c.G622A	p.D208N	.	.	.
MED23	9439	hgsc.bcm.edu	36	6	131981311	131981311	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015979	exon9	c.A709G	p.I237V	.	.	.
BTNL2	56244	hgsc.bcm.edu	36	6	32471864	32471864	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019602	exon5	c.C1008T	p.D336D	.	.	.
ITPR3	3710	hgsc.bcm.edu	36	6	33738721	33738721	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002224	exon9	c.G914A	p.R305H	.	.	.
PRPF8	10594	hgsc.bcm.edu	36	17	1526656	1526656	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_006445	exon16	c.A2281C	p.I761L	.	.	.
SRR	63826	hgsc.bcm.edu	36	17	2171374	2171374	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021947	exon5	c.G424A	p.V142I	.	.	.
MSI2	124540	hgsc.bcm.edu	36	17	53084501	53084501	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138962	exon11	c.T770A	p.V257E	.	.	.
CD300C	10871	hgsc.bcm.edu	36	17	70050653	70050653	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006678	exon3	c.G469T	p.V157L	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7519128	7519128	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon5	c.G527T	p.C176F	TP53,central_nervous_system,brain,Substitution - Missense,0	.	.
RNF213	57674	hgsc.bcm.edu	36	17	75928688	75928688	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_020914	exon27	c.G6073A	p.A2025T	.	.	.
PFAS	5198	hgsc.bcm.edu	36	17	8100576	8100576	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012393	exon8	c.G831A	p.Q277Q	.	.	.
HSF2BP	11077	hgsc.bcm.edu	36	21	43774112	43774112	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007031	exon9	c.G955A	p.A319T	.	.	.
MCM3AP	8888	hgsc.bcm.edu	36	21	46516994	46516994	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_003906	exon8	c.G2374A	p.D792N	.	.	.
PRKCB	5579	hgsc.bcm.edu	36	16	23907353	23907353	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_212535	exon3	c.C229T	p.R77W	.	.	.
ORAI3	93129	hgsc.bcm.edu	36	16	30872581	30872581	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152288	exon2	c.G803A	p.R268H	.	.	.
BTBD12	84464	hgsc.bcm.edu	36	16	3587835	3587835	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_032444	exon6	c.G1330C	p.E444Q	.	.	.
LAMP3	27074	hgsc.bcm.edu	36	3	184354520	184354520	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014398	exon2	c.C403T	p.P135S	.	.	.
QARS	5859	hgsc.bcm.edu	36	3	49111345	49111345	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005051	exon19	c.A1840G	p.I614V	.	.	.
GNL3	26354	hgsc.bcm.edu	36	3	52702298	52702298	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_206825	exon11	c.T1064C	p.V355A	.	.	.
TCHP	84260	hgsc.bcm.edu	36	12	108836678	108836678	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001143852	exon11	c.C1183T	p.R395X	.	.	.
IPO8	10526	hgsc.bcm.edu	36	12	30683934	30683934	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006390	exon21	c.C2271T	p.C757C	.	.	.
PDZRN4	29951	hgsc.bcm.edu	36	12	40253075	40253075	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001164595	exon10	c.G2227A	p.E743K	.	.	.
ERBB3	2065	hgsc.bcm.edu	36	12	54767635	54767635	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001982	exon5	c.C555A	p.P185P	.	.	.
SHMT2	6472	hgsc.bcm.edu	36	12	55912513	55912513	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_001166359	exon6	c.G542T	p.G181V	.	.	.
SHMT2	6472	hgsc.bcm.edu	36	12	55912872	55912872	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_001166359	exon7	c.A773T	p.H258L	.	.	.
DUSP6	1848	hgsc.bcm.edu	36	12	88267169	88267169	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022652	exon2	c.C701T	p.S234F	.	.	.
GPC3	2719	hgsc.bcm.edu	36	X	132654101	132654101	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001164618	exon5	c.C1206T	p.N402N	.	.	.
RBMX	27316	hgsc.bcm.edu	36	X	135784133	135784133	+	Missense_Mutation	SNP	C	C	T	rs55701431	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002139	exon9	c.G1010A	p.S337N	.	.	.
PTCHD1	139411	hgsc.bcm.edu	36	X	23322109	23322109	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173495	exon3	c.C2553T	p.P851P	.	.	.
ZNF41	7592	hgsc.bcm.edu	36	X	47192327	47192327	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_153380	exon5	c.G1786A	p.V596M	.	.	.
CHRNA1	1134	hgsc.bcm.edu	36	2	175321586	175321586	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000079	exon8	c.G1210C	p.E404Q	.	.	.
HECW2	57520	hgsc.bcm.edu	36	2	196793839	196793839	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020760	exon25	c.C4218T	p.I1406I	.	.	.
TRAK2	66008	hgsc.bcm.edu	36	2	201953697	201953697	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015049	exon16	c.A2559G	p.Q853Q	.	.	.
APOB	338	hgsc.bcm.edu	36	2	21084735	21084735	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000384	exon26	c.C8510T	p.T2837M	.	.	.
FN1	2335	hgsc.bcm.edu	36	2	215956384	215956384	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_212476	exon30	c.G4689T	p.L1563L	.	.	.
NMUR1	10316	hgsc.bcm.edu	36	2	232098213	232098213	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_006056	exon3	c.T1066C	p.Y356H	.	.	.
SNX17	9784	hgsc.bcm.edu	36	2	27453001	27453001	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_014748	exon15	c.C1324T	p.R442W	.	.	.
GKN2	200504	hgsc.bcm.edu	36	2	69027793	69027793	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182536	exon4	c.A305G	p.Y102C	.	.	.
KCNIP3	30818	hgsc.bcm.edu	36	2	95411084	95411084	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001034914	exon5	c.G383C	p.G128A	.	.	.
COL27A1	85301	hgsc.bcm.edu	36	9	116011786	116011786	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032888	exon11	c.G2279A	p.G760E	.	.	.
CEP110	11064	hgsc.bcm.edu	36	9	122977166	122977166	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_007018	exon41	c.G6797A	p.G2266E	.	.	.
COBRA1	25920	hgsc.bcm.edu	36	9	139286405	139286405	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015456	exon11	c.C1397T	p.T466M	.	.	.
KDM4C	23081	hgsc.bcm.edu	36	9	6795609	6795609	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001146696	exon3	c.C221T	p.P74L	.	.	.
ARMC4	55130	hgsc.bcm.edu	36	10	28269568	28269568	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018076	exon13	c.G1916A	p.R639Q	.	.	.
TET1	80312	hgsc.bcm.edu	36	10	70003245	70003245	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_030625	exon2	c.G1144A	p.D382N	.	.	.
APC	324	hgsc.bcm.edu	36	5	112203419	112203419	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon14	c.G4175C	p.C1392S	APC,large_intestine,NS,Substitution - Nonsense,-1	.	.
ANKHD1-EIF4EBP3	404734	hgsc.bcm.edu	36	5	139856902	139856902	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017747	exon15	c.A2859C	p.K953N	.	.	.
PCDHA1	56147	hgsc.bcm.edu	36	5	140146350	140146350	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_031410	exon1	c.G291C	p.Q97H	.	.	.
PCDHB4	56131	hgsc.bcm.edu	36	5	140481946	140481946	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018938	exon1	c.G182A	p.R61Q	.	.	.
KCTD16	57528	hgsc.bcm.edu	36	5	143833614	143833614	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020768	exon4	c.G1031A	p.R344H	.	.	.
GEMIN5	25929	hgsc.bcm.edu	36	5	154249159	154249159	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015465	exon27	c.A4274G	p.K1425R	.	.	.
IQGAP2	10788	hgsc.bcm.edu	36	5	75921285	75921285	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3549-01	TCGA-AA-3549-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006633	exon7	c.G616A	p.E206K	.	.	.
