Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
C19orf63	284361	broad.mit.edu	36	19	55676943	55676944	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AA-3666-01	TCGA-AA-3666-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175063	exon7	c.692_693insG	p.L231fs	.	.	.
MAPKAPK3	7867	broad.mit.edu	36	3	50630083	50630084	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AA-3666-01	TCGA-AA-3666-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004635	exon2	c.83_84insG	p.P28fs	.	.	.
PIGB	9488	broad.mit.edu	36	15	53398775	53398776	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AA-3666-01	TCGA-AA-3666-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004855	exon1	c.35_36insG	p.P12fs	.	.	.
DPP7	29952	broad.mit.edu	36	9	139126147	139126148	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AA-3666-01	TCGA-AA-3666-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013379	exon10	c.1206_1207insG	p.G402fs	.	.	.
OR2A12	346525	broad.mit.edu	36	7	143423433	143423433	+	Silent	SNP	T	G	G	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004135	exon1	c.T300G	p.T100T	.	.	.
C7orf29	113763	broad.mit.edu	36	7	149658437	149658437	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_138434	exon1	c.G11A	p.R4H	.	.	.
STK31	56164	broad.mit.edu	36	7	23775246	23775246	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001122833	exon12	c.G1455C	p.E485D	.	.	.
PKD1L1	168507	broad.mit.edu	36	7	47935619	47935619	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_138295	exon7	c.G767A	p.R256H	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48399286	48399286	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_152701	exon35	c.A11414C	p.K3805T	.	.	.
MAGI2	9863	broad.mit.edu	36	7	78474420	78474420	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_012301	exon2	c.T340G	p.L114V	.	.	.
CSRP2BP	57325	broad.mit.edu	36	20	18113356	18113356	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020536	exon9	c.G2095C	p.A699P	.	.	.
TSHZ2	128553	broad.mit.edu	36	20	51305718	51305718	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_173485	exon2	c.A2314G	p.S772G	.	.	.
INF2	64423	broad.mit.edu	36	14	104240733	104240733	+	Silent	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032714	exon4	c.C564T	p.S188S	.	.	.
OR4K5	79317	broad.mit.edu	36	14	19459305	19459305	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001005483	exon1	c.G700C	p.A234P	.	.	.
AKAP6	9472	broad.mit.edu	36	14	32362333	32362333	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004274	exon13	c.C5563T	p.R1855C	.	.	.
SRSF5	6430	broad.mit.edu	36	14	69306980	69306980	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039465	exon6	c.C410T	p.A137V	.	.	.
SLC25A18	83733	broad.mit.edu	36	22	16452368	16452368	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_031481	exon10	c.G743T	p.R248L	.	.	.
APOBEC3D	140564	broad.mit.edu	36	22	37755360	37755360	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152426	exon5	c.A652G	p.K218E	.	.	.
OR10H2	26538	broad.mit.edu	36	19	15700673	15700673	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_013939	exon1	c.C820A	p.L274M	.	.	.
CCDC123	84902	broad.mit.edu	36	19	38136546	38136546	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_032816	exon4	c.C307G	p.P103A	.	.	.
MYH14	79784	broad.mit.edu	36	19	55476865	55476865	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001077186	exon32	c.G4394A	p.R1465Q	.	.	.
ZNF880	400713	broad.mit.edu	36	19	57579820	57579820	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145434	exon4	c.A1175C	p.K392T	.	.	.
NLRP2	55655	broad.mit.edu	36	19	60186225	60186225	+	Silent	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001174083	exon7	c.G1278A	p.T426T	.	.	.
TMEM150B	284417	broad.mit.edu	36	19	60516050	60516050	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001085488	exon8	c.G691T	p.V231F	.	.	.
EXT1	2131	broad.mit.edu	36	8	119191925	119191925	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000127	exon1	c.T542C	p.L181P	.	.	.
GSDMC	56169	broad.mit.edu	36	8	130830109	130830109	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031415	exon14	c.A1347T	p.K449N	.	.	.
ADCY8	114	broad.mit.edu	36	8	131991167	131991167	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001115	exon6	c.G1609A	p.A537T	.	.	.
GML	2765	broad.mit.edu	36	8	143925035	143925035	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002066	exon4	c.G404T	p.G135V	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3026123	3026123	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_033225	exon37	c.C5642A	p.A1881D	.	.	.
KIAA0146	23514	broad.mit.edu	36	8	48471691	48471691	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001080394	exon6	c.C728G	p.A243G	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77930982	77930982	+	Silent	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024721	exon10	c.C9270T	p.H3090H	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77938901	77938901	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_024721	exon11	c.C10396T	p.L3466F	.	.	.
TBL1Y	90665	broad.mit.edu	36	Y	6998319	6998319	+	Silent	SNP	T	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033284	exon9	c.T540A	p.S180S	.	.	.
MTOR	2475	broad.mit.edu	36	1	11099665	11099665	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004958	exon50	c.T6999G	p.I2333M	.	.	.
NRAS	4893	broad.mit.edu	36	1	115058053	115058053	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002524	exon3	c.C181A	p.Q61K	NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.
HRNR	388697	broad.mit.edu	36	1	150457698	150457698	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001009931	exon3	c.C3031T	p.R1011C	.	.	.
INSRR	3645	broad.mit.edu	36	1	155081194	155081194	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014215	exon13	c.C2503T	p.R835C	.	.	.
SPTA1	6708	broad.mit.edu	36	1	156884019	156884019	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003126	exon27	c.G3830A	p.R1277H	.	.	.
KLHL20	27252	broad.mit.edu	36	1	171992748	171992748	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014458	exon7	c.G978C	p.W326C	.	.	.
ASTN1	460	broad.mit.edu	36	1	175193478	175193478	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004319	exon11	c.C1846T	p.R616C	.	.	.
CFH	3075	broad.mit.edu	36	1	194962545	194962545	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000186	exon14	c.A2088C	p.E696D	.	.	.
CR1	1378	broad.mit.edu	36	1	205785380	205785380	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000651	exon14	c.G2341A	p.D781N	.	.	.
TGFB2	7042	broad.mit.edu	36	1	216674066	216674066	+	Nonsense_Mutation	SNP	T	G	G	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003238	exon3	c.T530G	p.L177X	.	.	.
RYR2	6262	broad.mit.edu	36	1	236013844	236013844	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001035	exon90	c.C12209T	p.A4070V	.	.	.
OR6F1	343169	broad.mit.edu	36	1	245942326	245942326	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005286	exon1	c.G355T	p.A119S	.	.	.
SPOCD1	90853	broad.mit.edu	36	1	32032419	32032419	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_144569	exon11	c.C2276T	p.P759L	.	.	.
PHC2	1912	broad.mit.edu	36	1	33567322	33567322	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198040	exon13	c.G2158A	p.V720M	.	.	.
C8B	732	broad.mit.edu	36	1	57198323	57198323	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000066	exon2	c.T207G	p.S69R	.	.	.
SLC44A5	204962	broad.mit.edu	36	1	75449815	75449815	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_152697	exon23	c.T1973A	p.F658Y	.	.	.
ZNF644	84146	broad.mit.edu	36	1	91179286	91179286	+	Silent	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201269	exon3	c.G213A	p.T71T	.	.	.
CADM1	23705	broad.mit.edu	36	11	114554606	114554606	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014333	exon9	c.T1178C	p.I393T	.	.	.
AMICA1	120425	broad.mit.edu	36	11	117576399	117576399	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_153206	exon6	c.G881T	p.S294I	.	.	.
TRIM68	55128	broad.mit.edu	36	11	4578502	4578502	+	Silent	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018073	exon7	c.C1038T	p.I346I	.	.	.
OR5M3	219482	broad.mit.edu	36	11	55994054	55994054	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001004742	exon1	c.T496G	p.F166V	.	.	.
CLP1	10978	broad.mit.edu	36	11	57185002	57185002	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001142597	exon3	c.C604G	p.L202V	.	.	.
OR52N1	79473	broad.mit.edu	36	11	5766168	5766168	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001001913	exon1	c.T455G	p.L152R	.	.	.
OR52E4	390081	broad.mit.edu	36	11	5862744	5862744	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001005165	exon1	c.G646A	p.A216T	.	.	.
NRXN2	9379	broad.mit.edu	36	11	64175620	64175620	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015080	exon14	c.G2601C	p.E867D	.	.	.
SPTBN2	6712	broad.mit.edu	36	11	66211595	66211595	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006946	exon34	c.G6601A	p.E2201K	.	.	.
SUV420H1	51111	broad.mit.edu	36	11	67682539	67682539	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_017635	exon11	c.G1850A	p.G617E	.	.	.
PCF11	51585	broad.mit.edu	36	11	82560562	82560562	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015885	exon9	c.C3715A	p.P1239T	.	.	.
SYCP2L	221711	broad.mit.edu	36	6	11020895	11020895	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001040274	exon13	c.A922G	p.R308G	.	.	.
PKIB	5570	broad.mit.edu	36	6	123080656	123080656	+	Silent	SNP	A	C	C	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032471	exon3	c.A18C	p.S6S	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152681753	152681753	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_033071	exon84	c.A16114G	p.T5372A	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152873078	152873078	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_033071	exon8	c.A545T	p.K182M	.	.	.
TNXB	7148	broad.mit.edu	36	6	32132472	32132472	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_019105	exon23	c.C8012T	p.A2671V	.	.	.
PGK2	5232	broad.mit.edu	36	6	49862461	49862461	+	Silent	SNP	T	C	C	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138733	exon1	c.A399G	p.Q133Q	.	.	.
BMP5	653	broad.mit.edu	36	6	55733231	55733231	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_021073	exon5	c.C1087T	p.R363W	.	.	.
TXNDC5	81567	broad.mit.edu	36	6	7849928	7849928	+	Silent	SNP	C	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030810	exon2	c.G291T	p.P97P	.	.	.
SYNCRIP	10492	broad.mit.edu	36	6	86406966	86406966	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Unspecified	454			Illumina	NM_001159677	exon3	c.A184C	p.I62L	.	.	.
NGFR	4804	broad.mit.edu	36	17	44945284	44945284	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002507	exon6	c.G1198A	p.A400T	.	.	.
TP53	7157	broad.mit.edu	36	17	7520086	7520086	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001126114	exon4	c.T326G	p.F109C	.	.	.
COL18A1	80781	broad.mit.edu	36	21	45712784	45712784	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_030582	exon2	c.G847T	p.E283X	.	.	.
BAIAP3	8938	broad.mit.edu	36	16	1335285	1335285	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199099	exon22	c.G1891A	p.A631T	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69509656	69509656	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_032821	exon47	c.G7960C	p.E2654Q	.	.	.
ROCK1	6093	broad.mit.edu	36	18	16787683	16787683	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005406	exon32	c.A3915C	p.Q1305H	.	.	.
SMAD4	4089	broad.mit.edu	36	18	46857007	46857007	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_005359	exon11	c.T1310A	p.V437D	.	.	.
PTPRM	5797	broad.mit.edu	36	18	8243317	8243317	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002845	exon17	c.G2620A	p.G874R	.	.	.
C3orf30	152405	broad.mit.edu	36	3	120348277	120348277	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_152539	exon1	c.G551A	p.G184D	.	.	.
ZNF148	7707	broad.mit.edu	36	3	126480698	126480698	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021964	exon6	c.A543T	p.R181S	.	.	.
CCDC39	339829	broad.mit.edu	36	3	181844627	181844627	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_181426	exon12	c.T1640G	p.L547R	.	.	.
KLHL24	54800	broad.mit.edu	36	3	184871614	184871614	+	Silent	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017644	exon6	c.G1323A	p.K441K	.	.	.
MASP1	5648	broad.mit.edu	36	3	188453722	188453722	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001031849	exon6	c.A820T	p.S274C	.	.	.
DLG1	1739	broad.mit.edu	36	3	198316197	198316197	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004087	exon15	c.C1619A	p.T540K	.	.	.
XIRP1	165904	broad.mit.edu	36	3	39201548	39201548	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_194293	exon2	c.C4393T	p.Q1465X	.	.	.
CHL1	10752	broad.mit.edu	36	3	399221	399221	+	Silent	SNP	C	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006614	exon18	c.C2043A	p.V681V	.	.	.
SRGAP3	9901	broad.mit.edu	36	3	9043649	9043649	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014850	exon13	c.G1570A	p.E524K	.	.	.
BRPF1	7862	broad.mit.edu	36	3	9757555	9757555	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004634	exon4	c.G1652A	p.R551Q	.	.	.
C12orf59	120939	broad.mit.edu	36	12	10233962	10233962	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_153022	exon4	c.C448G	p.P150A	.	.	.
DAO	1610	broad.mit.edu	36	12	107807425	107807425	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001917	exon4	c.G361T	p.E121X	.	.	.
MYO1H	283446	broad.mit.edu	36	12	108355165	108355165	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Unspecified	454			Illumina	NM_001101421	exon19	c.T1982C	p.I661T	.	.	.
PRMT8	56341	broad.mit.edu	36	12	3571757	3571757	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_019854	exon9	c.T1079C	p.M360T	.	.	.
COL2A1	1280	broad.mit.edu	36	12	46654872	46654872	+	Silent	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_033150	exon51	c.C3720T	p.D1240D	.	.	.
C15orf41	84529	broad.mit.edu	36	15	34737371	34737371	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001130010	exon5	c.T319G	p.F107V	.	.	.
STRC	161497	broad.mit.edu	36	15	41679564	41679564	+	Missense_Mutation	SNP	T	C	C	rs2597060	by-2hit-2allele	TCGA-AA-3666-01	TCGA-AA-3666-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153700	exon28	c.A5125G	p.T1709A	.	.	.
RPL4	6124	broad.mit.edu	36	15	64580382	64580382	+	Silent	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000968	exon7	c.C792T	p.Y264Y	.	.	.
TLE3	7090	broad.mit.edu	36	15	68145582	68145582	+	Silent	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020908	exon7	c.C402T	p.S134S	.	.	.
HCN4	10021	broad.mit.edu	36	15	71411668	71411668	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_005477	exon3	c.G1228A	p.D410N	.	.	.
CRIPAK	285464	broad.mit.edu	36	4	1378923	1378923	+	Silent	SNP	T	C	C	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175918	exon1	c.T624C	p.P208P	.	.	.
FGA	2243	broad.mit.edu	36	4	155725238	155725238	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000508	exon6	c.G2089A	p.G697S	.	.	.
GUCY1A3	2982	broad.mit.edu	36	4	156857809	156857809	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001130682	exon8	c.G1621C	p.E541Q	.	.	.
KCTD8	386617	broad.mit.edu	36	4	43871814	43871814	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_198353	exon2	c.G1172A	p.R391H	.	.	.
PDGFRA	5156	broad.mit.edu	36	4	54828298	54828298	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006206	exon6	c.T845A	p.V282E	.	.	.
EPHA5	2044	broad.mit.edu	36	4	65915679	65915679	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004439	exon10	c.A1915T	p.N639Y	.	.	.
HTR2C	3358	broad.mit.edu	36	X	113988963	113988963	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000868	exon5	c.G491A	p.R164H	.	.	.
IGSF1	3547	broad.mit.edu	36	X	130240354	130240355	+	Missense_Mutation	DNP	AG	GA	GA	novel		TCGA-AA-3666-01	TCGA-AA-3666-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001170962	exon11	c.1775_1776TC	.	.	.	.
GRPR	2925	broad.mit.edu	36	X	16078593	16078593	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005314	exon2	c.G658A	p.V220I	.	.	.
BEND2	139105	broad.mit.edu	36	X	18099166	18099166	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_153346	exon13	c.C2061A	p.S687R	.	.	.
ARSD	414	broad.mit.edu	36	X	2846233	2846233	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_009589	exon5	c.G475A	p.G159R	.	.	.
CLCN5	1184	broad.mit.edu	36	X	49741762	49741762	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001127899	exon13	c.T1994G	p.L665W	.	.	.
FAM123B	139285	broad.mit.edu	36	X	63328403	63328403	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_152424	exon2	c.C1489T	p.R497X	.	.	.
AR	367	broad.mit.edu	36	X	66848107	66848107	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001011645	exon4	c.T428C	p.L143P	.	.	.
SPOPL	339745	broad.mit.edu	36	2	139024528	139024528	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001664	exon3	c.A84C	p.K28N	.	.	.
SCN9A	6335	broad.mit.edu	36	2	166763879	166763879	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002977	exon27	c.T5483G	p.L1828R	.	.	.
SDC1	6382	broad.mit.edu	36	2	20267112	20267112	+	Silent	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002997	exon3	c.G570A	p.R190R	.	.	.
CPO	130749	broad.mit.edu	36	2	207512597	207512597	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173077	exon1	c.T29A	p.L10H	.	.	.
OBSL1	23363	broad.mit.edu	36	2	220127584	220127584	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015311	exon15	c.C4732T	p.Q1578X	.	.	.
SLC30A3	7781	broad.mit.edu	36	2	27335158	27335158	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003459	exon2	c.G244A	p.V82I	.	.	.
WDR92	116143	broad.mit.edu	36	2	68212043	68212043	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_138458	exon8	c.G905A	p.G302E	.	.	.
ZNF638	27332	broad.mit.edu	36	2	71430676	71430676	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014497	exon2	c.G1084A	p.V362I	.	.	.
TRPM3	80036	broad.mit.edu	36	9	72429968	72429968	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001007471	exon13	c.C1732T	p.R578C	.	.	.
GNAQ	2776	broad.mit.edu	36	9	79602319	79602319	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002072	exon4	c.G542C	p.R181T	.	.	.
GJB2	2706	broad.mit.edu	36	13	19661364	19661364	+	Silent	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004004	exon2	c.G357A	p.E119E	.	.	.
DCLK1	9201	broad.mit.edu	36	13	35280434	35280434	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001195416	exon10	c.T869C	p.L290P	.	.	.
SOHLH2	54937	broad.mit.edu	36	13	35674025	35674025	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_017826	exon2	c.A254C	p.K85T	.	.	.
CSNK1A1L	122011	broad.mit.edu	36	13	36577386	36577386	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145203	exon1	c.A8C	p.N3T	.	.	.
FAM124A	220108	broad.mit.edu	36	13	50752661	50752661	+	Silent	SNP	T	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145019	exon5	c.T1017A	p.T339T	.	.	.
EDNRB	1910	broad.mit.edu	36	13	77390521	77390521	+	Silent	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001122659	exon1	c.G189A	p.A63A	.	.	.
PYROXD2	84795	broad.mit.edu	36	10	100142242	100142242	+	Silent	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032709	exon10	c.G999A	p.V333V	.	.	.
CHST15	51363	broad.mit.edu	36	10	125795620	125795620	+	Silent	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015892	exon2	c.G99A	p.A33A	.	.	.
GJD4	219770	broad.mit.edu	36	10	35936727	35936727	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153368	exon2	c.G280A	p.V94I	.	.	.
TMEM72	643236	broad.mit.edu	36	10	44750225	44750225	+	Silent	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001123376	exon5	c.C465T	p.S155S	.	.	.
RBP3	5949	broad.mit.edu	36	10	48010220	48010220	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002900	exon1	c.G664A	p.G222S	.	.	.
ERCC6	2074	broad.mit.edu	36	10	50354295	50354295	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000124	exon12	c.T2354A	p.V785D	.	.	.
OGDHL	55753	broad.mit.edu	36	10	50629888	50629888	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001143996	exon5	c.G569A	p.R190H	.	.	.
FBXO18	84893	broad.mit.edu	36	10	5996163	5996163	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_032807	exon9	c.C1474G	p.L492V	.	.	.
PRKCQ	5588	broad.mit.edu	36	10	6510310	6510310	+	Silent	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006257	exon18	c.C1986T	p.S662S	.	.	.
LRRTM3	347731	broad.mit.edu	36	10	68357743	68357743	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178011	exon2	c.G1063T	p.V355L	.	.	.
MCC	4163	broad.mit.edu	36	5	112486351	112486351	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001085377	exon6	c.G956A	p.R319Q	.	.	.
DMXL1	1657	broad.mit.edu	36	5	118497625	118497625	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_005509	exon12	c.A2107G	p.S703G	.	.	.
PCDHA2	56146	broad.mit.edu	36	5	140154917	140154917	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_018905	exon1	c.C184T	p.R62C	.	.	.
PCDHAC2	56134	broad.mit.edu	36	5	140326972	140326972	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_018899	exon1	c.C437T	p.P146L	.	.	.
PCDHB4	56131	broad.mit.edu	36	5	140483975	140483975	+	Silent	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018938	exon1	c.C2211T	p.D737D	.	.	.
PCDHB8	56128	broad.mit.edu	36	5	140538724	140538724	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Unspecified	454			Illumina	NM_019120	exon1	c.G925A	p.D309N	.	.	.
PCDHB14	56122	broad.mit.edu	36	5	140584711	140584711	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_018934	exon1	c.G1450A	p.A484T	.	.	.
PCDHGA2	56113	broad.mit.edu	36	5	140699012	140699012	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_032009	exon1	c.C290A	p.A97D	.	.	.
FBXO38	81545	broad.mit.edu	36	5	147800217	147800217	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_205836	exon20	c.C3208G	p.R1070G	.	.	.
NMUR2	56923	broad.mit.edu	36	5	151764634	151764634	+	Silent	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020167	exon1	c.G234A	p.T78T	.	.	.
ZNF354A	6940	broad.mit.edu	36	5	178072114	178072114	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005649	exon5	c.G1371C	p.E457D	.	.	.
ZFP2	80108	broad.mit.edu	36	5	178291141	178291141	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_030613	exon5	c.A221G	p.H74R	.	.	.
SLC45A2	51151	broad.mit.edu	36	5	33999585	33999585	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001012509	exon3	c.C856T	p.Q286X	.	.	.
SPEF2	79925	broad.mit.edu	36	5	35705982	35705982	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_024867	exon10	c.G1420T	p.E474X	.	.	.
LMBRD2	92255	broad.mit.edu	36	5	36150945	36150945	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007527	exon12	c.A1471C	p.N491H	.	.	.
LIFR	3977	broad.mit.edu	36	5	38541907	38541907	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001127671	exon9	c.A1148G	p.K383R	.	.	.
EMB	133418	broad.mit.edu	36	5	49735005	49735005	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_198449	exon6	c.G641T	p.G214V	.	.	.
ADCY2	108	broad.mit.edu	36	5	7855411	7855411	+	Silent	SNP	C	T	T	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020546	exon21	c.C2709T	p.S903S	.	.	.
VCAN	1462	broad.mit.edu	36	5	82851791	82851791	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001164098	exon7	c.G1910C	p.G637A	.	.	.
APC	324	broad.mit.edu	36	5	112203250	112203250	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3666-01	TCGA-AA-3666-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.4006delT	p.F1336fs	APC,large_intestine,NS,Substitution - Missense,-2	.	.
CRYBG3	131544	broad.mit.edu	36	3	99100730	99100730	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3666-01	TCGA-AA-3666-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	.	.	.	.	.	.	.
