Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
SFTPC	6440	broad.mit.edu	36	8	22077004	22077005	+	Splice_Site	INS	-	GT	GT	novel		TCGA-AA-3986-01	TCGA-AA-3986-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003018	exon4	c.435_436insGT	p.Q145fs	.	.	.
KIAA1683	80726	broad.mit.edu	36	19	18237110	18237111	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AA-3986-01	TCGA-AA-3986-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025249	exon3	c.2240_2241insC	p.Q747fs	.	.	.
CBX8	57332	broad.mit.edu	36	17	75383256	75383257	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AA-3986-01	TCGA-AA-3986-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020649	exon5	c.943_944insC	p.S315fs	.	.	.
HLA-H	3136	broad.mit.edu	36	6	29963843	29963844	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
PTN	5764	broad.mit.edu	36	7	136588880	136588880	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002825	exon3	c.G160T	p.V54L	.	.	.
CARD11	84433	broad.mit.edu	36	7	2930458	2930458	+	Silent	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032415	exon15	c.C1875T	p.S625S	.	.	.
GCK	2645	broad.mit.edu	36	7	44155897	44155897	+	Silent	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000162	exon6	c.C666T	p.V222V	.	.	.
DNMT3B	1789	broad.mit.edu	36	20	30846887	30846887	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_175848	exon10	c.C1078T	p.R360X	.	.	.
APCDD1L	164284	broad.mit.edu	36	20	56469443	56469443	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_153360	exon4	c.G1315A	p.D439N	.	.	.
ANKRD5	63926	broad.mit.edu	36	20	9981776	9981776	+	Silent	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198798	exon8	c.C1887T	p.D629D	.	.	.
RALGAPA1	253959	broad.mit.edu	36	14	35281390	35281390	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_194301	exon11	c.C1384T	p.L462F	.	.	.
CECR2	27443	broad.mit.edu	36	22	16408280	16408280	+	Silent	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031413	exon16	c.G3239A	p.R1080H	.	.	.
SOX10	6663	broad.mit.edu	36	22	36709370	36709370	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006941	exon2	c.C368T	p.A123V	.	.	.
CACNA1A	773	broad.mit.edu	36	19	13258513	13258513	+	Silent	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001174080	exon20	c.C3360T	p.A1120A	.	.	.
ARRDC2	27106	broad.mit.edu	36	19	17982520	17982520	+	Silent	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001025604	exon7	c.G1137A	p.P379P	.	.	.
TSHZ3	57616	broad.mit.edu	36	19	36460921	36460921	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020856	exon2	c.G1618A	p.G540S	.	.	.
DLL3	10683	broad.mit.edu	36	19	44687807	44687807	+	Silent	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203486	exon6	c.C969T	p.N323N	.	.	.
CYP2A7	1549	broad.mit.edu	36	19	46079365	46079365	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000764	exon2	c.A312C	p.Q104H	.	.	.
ARHGEF1	9138	broad.mit.edu	36	19	47088555	47088555	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_198977	exon6	c.C310T	p.R104W	.	.	.
EML2	24139	broad.mit.edu	36	19	50828050	50828050	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193269	exon9	c.G860A	p.R287H	.	.	.
NCR1	9437	broad.mit.edu	36	19	60109475	60109475	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004829	exon2	c.G41A	p.C14Y	.	.	.
ZNF324	25799	broad.mit.edu	36	19	63674961	63674961	+	Silent	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014347	exon4	c.C1290T	p.C430C	.	.	.
MUC16	94025	broad.mit.edu	36	19	8950222	8950222	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_024690	exon1	c.G2593T	p.E865X	.	.	.
DLC1	10395	broad.mit.edu	36	8	13002304	13002304	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_182643	exon9	c.G1913T	p.G638V	.	.	.
LOXL2	4017	broad.mit.edu	36	8	23281599	23281599	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002318	exon2	c.C211T	p.R71W	.	.	.
RGS20	8601	broad.mit.edu	36	8	55014716	55014716	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170587	exon3	c.C538T	p.R180W	.	.	.
FLG2	388698	broad.mit.edu	36	1	150596138	150596138	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001014342	exon3	c.G748T	p.E250X	.	.	.
PGLYRP3	114771	broad.mit.edu	36	1	151537204	151537204	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052891	exon7	c.C878T	p.A293V	.	.	.
CADM3	57863	broad.mit.edu	36	1	157408246	157408246	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021189	exon1	c.G67A	p.G23R	.	.	.
PADI6	353238	broad.mit.edu	36	1	17594035	17594035	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_207421	exon12	c.G1340A	p.R447H	.	.	.
IL24	11009	broad.mit.edu	36	1	205140300	205140300	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001185156	exon4	c.A281T	p.Q94L	.	.	.
KIF26B	55083	broad.mit.edu	36	1	243770752	243770752	+	Silent	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018012	exon5	c.C1227T	p.S409S	.	.	.
OR2M4	26245	broad.mit.edu	36	1	246469653	246469653	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_017504	exon1	c.C800T	p.T267M	.	.	.
TESK2	10420	broad.mit.edu	36	1	45585891	45585891	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007170	exon7	c.C685T	p.R229X	.	.	.
ZYG11B	79699	broad.mit.edu	36	1	53009529	53009529	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_024646	exon3	c.C446T	p.S149F	.	.	.
C11orf71	54494	broad.mit.edu	36	11	113776168	113776168	+	Silent	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019021	exon1	c.G96A	p.A32A	.	.	.
MRGPRX3	117195	broad.mit.edu	36	11	18115434	18115434	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_054031	exon3	c.G109A	p.V37I	.	.	.
LDHAL6A	160287	broad.mit.edu	36	11	18442091	18442091	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144972	exon2	c.G134A	p.S45N	.	.	.
OR5M9	390162	broad.mit.edu	36	11	55986723	55986723	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001004743	exon1	c.C731T	p.T244M	.	.	.
DTX4	23220	broad.mit.edu	36	11	58728809	58728809	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015177	exon9	c.G1711A	p.V571I	.	.	.
RELT	84957	broad.mit.edu	36	11	72780957	72780957	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152222	exon6	c.G421A	p.G141S	.	.	.
LRFN2	57497	broad.mit.edu	36	6	40468395	40468395	+	Silent	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020737	exon3	c.G1635A	p.T545T	.	.	.
TFAP2D	83741	broad.mit.edu	36	6	50791271	50791271	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_172238	exon2	c.G523T	p.A175S	.	.	.
ANKRD6	22881	broad.mit.edu	36	6	90394086	90394086	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014942	exon14	c.C1435T	p.R479C	.	.	.
MAP2K4	6416	broad.mit.edu	36	17	11969339	11969339	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003010	exon8	c.G817T	p.E273X	.	.	.
TRAF4	9618	broad.mit.edu	36	17	24100579	24100579	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004295	exon7	c.C1270T	p.R424W	.	.	.
SLC6A4	6532	broad.mit.edu	36	17	25560339	25560339	+	Silent	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001045	exon12	c.C1497T	p.P499P	.	.	.
PIP4K2B	8396	broad.mit.edu	36	17	34181001	34181001	+	Silent	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003559	exon8	c.C858T	p.H286H	.	.	.
KRTAP4-12	83755	broad.mit.edu	36	17	36533688	36533688	+	Silent	SNP	A	G	G	rs28515113	unknown	TCGA-AA-3986-01	TCGA-AA-3986-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031854	exon1	c.T213C	p.C71C	.	.	.
HELZ	9931	broad.mit.edu	36	17	62536222	62536222	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014877	exon29	c.C3961T	p.R1321C	.	.	.
ST8SIA5	29906	broad.mit.edu	36	18	42514369	42514369	+	Silent	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013305	exon7	c.C765T	p.T255T	.	.	.
ABI3BP	25890	broad.mit.edu	36	3	101954427	101954427	+	Silent	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015429	exon33	c.G2883A	p.E961E	.	.	.
COL6A6	131873	broad.mit.edu	36	3	131863777	131863777	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001102608	exon34	c.G6437A	p.R2146Q	.	.	.
MED12L	116931	broad.mit.edu	36	3	152570024	152570024	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_053002	exon24	c.C3556A	p.L1186I	.	.	.
CLCN2	1181	broad.mit.edu	36	3	185547240	185547240	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004366	exon24	c.A2545G	p.K849E	.	.	.
SCN5A	6331	broad.mit.edu	36	3	38567936	38567936	+	Missense_Mutation	SNP	C	T	T	rs28937316	unknown	TCGA-AA-3986-01	TCGA-AA-3986-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001099405	exon27	c.G4877A	p.R1626H	.	.	.
TGM4	7047	broad.mit.edu	36	3	44927819	44927819	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003241	exon13	c.G1830T	p.K610N	.	.	.
MITF	4286	broad.mit.edu	36	3	70096861	70096861	+	Silent	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198158	exon9	c.G1014A	p.T338T	.	.	.
C12orf51	283450	broad.mit.edu	36	12	111153765	111153765	+	Silent	SNP	G	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001109662	exon38	c.C5619A	p.S1873S	.	.	.
OAS3	4940	broad.mit.edu	36	12	111890158	111890158	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006187	exon14	c.C2900T	p.P967L	.	.	.
KRAS	3845	broad.mit.edu	36	12	25269829	25269829	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004985	exon4	c.G436A	p.A146T	KRAS,large_intestine,NS,Substitution - Missense,0	.	.
SLC25A3	5250	broad.mit.edu	36	12	97519335	97519335	+	Silent	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002635	exon8	c.G984A	p.Q328Q	.	.	.
ATP10A	57194	broad.mit.edu	36	15	23510382	23510382	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_024490	exon10	c.G1876A	p.G626R	.	.	.
ANKDD1A	348094	broad.mit.edu	36	15	62996724	62996724	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_182703	exon3	c.C225T	p.D75D	.	.	.
CYP1A1	1543	broad.mit.edu	36	15	72802091	72802091	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000499	exon2	c.G401A	p.R134H	.	.	.
AKAP13	11214	broad.mit.edu	36	15	84067524	84067524	+	Silent	SNP	G	C	C	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006738	exon26	c.G6726C	p.V2242V	.	.	.
LASS3	204219	broad.mit.edu	36	15	98760540	98760540	+	Silent	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178842	exon13	c.G1053A	p.E351E	.	.	.
INPP4B	8821	broad.mit.edu	36	4	143264010	143264010	+	Silent	SNP	T	C	C	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003866	exon21	c.A1902G	p.G634G	.	.	.
POLR2B	5431	broad.mit.edu	36	4	57567861	57567861	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000938	exon10	c.C1340T	p.S447F	.	.	.
DCX	1641	broad.mit.edu	36	X	110442559	110442559	+	Silent	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178153	exon6	c.G993A	p.T331T	.	.	.
HTR2C	3358	broad.mit.edu	36	X	114047858	114047858	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000868	exon6	c.C1001A	p.S334Y	.	.	.
LUZP4	51213	broad.mit.edu	36	X	114447111	114447111	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016383	exon4	c.C428T	p.P143L	.	.	.
DCAF12L1	139170	broad.mit.edu	36	X	125514241	125514241	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178470	exon1	c.G32A	p.R11Q	.	.	.
TTN	7273	broad.mit.edu	36	2	179117240	179117240	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003319	exon173	c.G68766A	p.P22922P	.	.	.
TTN	7273	broad.mit.edu	36	2	179209736	179209736	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003319	exon53	c.G13768A	p.E4590K	.	.	.
HECW2	57520	broad.mit.edu	36	2	197006272	197006272	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020760	exon2	c.A121G	p.M41V	.	.	.
DOCK10	55619	broad.mit.edu	36	2	225368015	225368015	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014689	exon45	c.G4979A	p.R1660H	.	.	.
KIF1A	547	broad.mit.edu	36	2	241359137	241359137	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004321	exon14	c.G1238A	p.R413H	.	.	.
ORM2	5005	broad.mit.edu	36	9	116133708	116133708	+	Silent	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000608	exon4	c.G369A	p.R123R	.	.	.
AKNA	80709	broad.mit.edu	36	9	116170572	116170572	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_030767	exon5	c.C1541T	p.P514L	.	.	.
BNC2	54796	broad.mit.edu	36	9	16427028	16427028	+	Silent	SNP	G	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017637	exon6	c.C1164A	p.T388T	.	.	.
TRPM6	140803	broad.mit.edu	36	9	76601487	76601487	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001177310	exon18	c.G2366A	p.S789N	.	.	.
DAPK1	1612	broad.mit.edu	36	9	89409718	89409718	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004938	exon3	c.G92A	p.R31H	.	.	.
SLC10A2	6555	broad.mit.edu	36	13	102516238	102516238	+	Silent	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000452	exon1	c.C363T	p.G121G	.	.	.
SACS	26278	broad.mit.edu	36	13	22808042	22808042	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014363	exon10	c.C7973A	p.A2658D	.	.	.
MRPS16	51021	broad.mit.edu	36	10	74681564	74681564	+	Silent	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016065	exon2	c.C237T	p.C79C	.	.	.
SLC12A2	6558	broad.mit.edu	36	5	127499338	127499338	+	Silent	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001046	exon7	c.C1347T	p.F449F	.	.	.
FSTL4	23105	broad.mit.edu	36	5	132580902	132580902	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015082	exon13	c.T1526C	p.V509A	.	.	.
SLIT3	6586	broad.mit.edu	36	5	168113472	168113472	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003062	exon17	c.C1804T	p.R602C	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71529563	71529563	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3986-01	TCGA-AA-3986-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_005909	exon5	c.C4625T	p.T1542M	.	.	.
