Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
FBXL13	222235	hgsc.bcm.edu	36	7	102456378	102456379	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001111038	exon4	c.122_123insA	p.M41fs	.	.	.
DBF4	10926	hgsc.bcm.edu	36	7	87363749	87363750	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006716	exon7	c.622_623insA	p.Q208fs	.	.	.
ACOT8	10005	hgsc.bcm.edu	36	20	43910710	43910711	+	Frame_Shift_Ins	INS	-	-	AATCA	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005469	exon3	c.274_275insTGATT	p.L92_P93delinsX	.	.	.
IL17RA	23765	hgsc.bcm.edu	36	22	15970518	15970519	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014339	exon13	c.2409_2410insC	p.Q803fs	.	.	.
CDC42BPB	9578	hgsc.bcm.edu	36	14	102516976	102516977	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006035	exon8	c.1027_1028insT	p.E343_G344delinsX	.	.	.
TEP1	7011	hgsc.bcm.edu	36	14	19922486	19922487	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007110	exon23	c.3243_3244insG	p.G1081fs	.	.	.
LEPROTL1	23484	hgsc.bcm.edu	36	8	30082810	30082811	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015344	exon4	c.286_287insG	p.W96fs	.	.	.
SPAG11B	10407	hgsc.bcm.edu	36	8	7306345	7306346	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_058203	exon3	c.336_337insT	p.L112fs	.	.	.
SPTBN4	57731	hgsc.bcm.edu	36	19	45754955	45754956	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020971	exon26	c.5476_5477insG	p.R1826fs	.	.	.
ZNF233	353355	hgsc.bcm.edu	36	19	49468958	49468959	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181756	exon5	c.305_306insCAG	p.D102delinsDS	.	.	.
NAPA	8775	hgsc.bcm.edu	36	19	52688539	52688540	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003827	exon5	c.366_367insA	p.K122fs	.	.	.
BARHL2	343472	hgsc.bcm.edu	36	1	90952849	90952850	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020063	exon2	c.678_679insC	p.P226fs	.	.	.
TULP4	56995	hgsc.bcm.edu	36	6	158820944	158820945	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020245	exon7	c.1200_1201insC	p.L400fs	.	.	.
TAPBP	6892	hgsc.bcm.edu	36	6	33381050	33381051	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003190	exon4	c.562_563insC	p.T188fs	.	.	.
CWF19L2	143884	hgsc.bcm.edu	36	11	106729522	106729523	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152434	exon13	c.2023_2024insA	p.C675fs	.	.	.
CTSF	8722	hgsc.bcm.edu	36	11	66091681	66091682	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003793	exon3	c.341_342insC	p.L114fs	.	.	.
RHBDL3	162494	hgsc.bcm.edu	36	17	27649272	27649273	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138328	exon6	c.717_718insC	p.V239fs	.	.	.
ZNF276	92822	hgsc.bcm.edu	36	16	88331911	88331912	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152287	exon11	c.1376_1377insA	p.R459fs	.	.	.
TBC1D23	55773	hgsc.bcm.edu	36	3	101522425	101522426	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199198	exon18	c.1938_1939insA	p.S646fs	.	.	.
GOLIM4	27333	hgsc.bcm.edu	36	3	169233224	169233225	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014498	exon9	c.954_955insC	p.P318fs	.	.	.
LINS1	55180	hgsc.bcm.edu	36	15	98927378	98927379	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001040616	exon7	c.1862_1863insC	p.R621fs	.	.	.
BCL2L11	10018	hgsc.bcm.edu	36	2	111598033	111598034	+	In_Frame_Ins	INS	-	-	ACA	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138621	exon2	c.240_241insACA	p.F80delinsFT	.	.	.
ORC4L	5000	hgsc.bcm.edu	36	2	148422238	148422239	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001190879	exon10	c.614_615insA	p.R205fs	.	.	.
GALNT5	11227	hgsc.bcm.edu	36	2	157861238	157861239	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014568	exon5	c.1964_1965insA	p.A655fs	.	.	.
KCNH7	90134	hgsc.bcm.edu	36	2	162965106	162965107	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033272	exon10	c.2246_2247insG	p.A749fs	.	.	.
PGAP1	80055	hgsc.bcm.edu	36	2	197420080	197420081	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024989	exon22	c.2042_2043insC	p.L681fs	.	.	.
SPAG16	79582	hgsc.bcm.edu	36	2	213913208	213913209	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024532	exon6	c.613_614insA	p.E205fs	.	.	.
ANGPTL2	23452	hgsc.bcm.edu	36	9	128910157	128910158	+	In_Frame_Ins	INS	-	-	TCC	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012098	exon2	c.675_676insGGA	p.Y225delinsX	.	.	.
LGI1	9211	hgsc.bcm.edu	36	10	95542591	95542592	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005097	exon6	c.605_606insC	p.G202fs	.	.	.
ARHGAP19	84986	hgsc.bcm.edu	36	10	98978900	98978901	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032900	exon11	c.1468_1469insG	p.K490fs	.	.	.
TCERG1	10915	hgsc.bcm.edu	36	5	145839838	145839839	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001040006	exon11	c.1811_1812insA	p.A604fs	.	.	.
HCN1	348980	hgsc.bcm.edu	36	5	45339541	45339542	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021072	exon6	c.1535_1536insA	p.M512fs	.	.	.
EPHB4	2050	hgsc.bcm.edu	36	7	100249539	100249539	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004444	exon9	c.C1629A	p.G543G	.	.	.
IMMP2L	83943	hgsc.bcm.edu	36	7	110948643	110948643	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032549	exon2	c.G97T	p.V33F	.	.	.
IMMP2L	83943	hgsc.bcm.edu	36	7	110948713	110948713	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032549	exon2	c.A27T	p.K9N	.	.	.
RNF133	168433	hgsc.bcm.edu	36	7	122126188	122126188	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139175	exon1	c.C21T	p.G7G	.	.	.
SND1	27044	hgsc.bcm.edu	36	7	127513062	127513062	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014390	exon20	c.C2298T	p.Y766Y	.	.	.
ZC3HC1	51530	hgsc.bcm.edu	36	7	129449434	129449434	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016478	exon9	c.G1401A	p.A467A	.	.	.
TBXAS1	6916	hgsc.bcm.edu	36	7	139257510	139257510	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001061	exon4	c.G257A	p.R86Q	TBXAS1,breast,NS,Substitution - Missense,+1	.	.
BRAF	673	hgsc.bcm.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004333	exon15	c.T1799A	p.V600E	BRAF,pituitary,NS,Substitution - Missense,0	.	.
TAS2R3	50831	hgsc.bcm.edu	36	7	141111021	141111021	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016943	exon1	c.C594A	p.A198A	.	.	.
TRPV6	55503	hgsc.bcm.edu	36	7	142282486	142282486	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018646	exon11	c.C1332A	p.L444L	.	.	.
ARHGEF5	7984	hgsc.bcm.edu	36	7	143708039	143708039	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005435	exon15	c.G4751T	p.R1584L	.	.	.
CNTNAP2	26047	hgsc.bcm.edu	36	7	146167867	146167867	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014141	exon3	c.C340T	p.R114W	.	.	.
PTPRN2	5799	hgsc.bcm.edu	36	7	157690654	157690654	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_130843	exon4	c.T350C	p.L117P	.	.	.
KLHL7	55975	hgsc.bcm.edu	36	7	23112172	23112172	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001031710	exon1	c.T2G	p.M1R	.	.	.
MPP6	51678	hgsc.bcm.edu	36	7	24669774	24669774	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016447	exon7	c.A692G	p.D231G	.	.	.
OSBPL3	26031	hgsc.bcm.edu	36	7	24840762	24840762	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145321	exon14	c.G1506T	p.K502N	.	.	.
HOXA2	3199	hgsc.bcm.edu	36	7	27107329	27107329	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006735	exon2	c.G672T	p.E224D	.	.	.
NEUROD6	63974	hgsc.bcm.edu	36	7	31344925	31344925	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022728	exon2	c.C483T	p.F161F	.	.	.
PDE1C	5137	hgsc.bcm.edu	36	7	31854116	31854116	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001191056	exon9	c.A971T	p.D324V	.	.	.
GLI3	2737	hgsc.bcm.edu	36	7	41978496	41978496	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000168	exon13	c.C2068A	p.L690I	.	.	.
GLI3	2737	hgsc.bcm.edu	36	7	42154402	42154402	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000168	exon3	c.C315T	p.R105R	.	.	.
GLI3	2737	hgsc.bcm.edu	36	7	42154501	42154501	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000168	exon3	c.T216C	p.S72S	.	.	.
AEBP1	165	hgsc.bcm.edu	36	7	44119859	44119859	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001129	exon21	c.G2951A	p.R984H	.	.	.
TMED4	222068	hgsc.bcm.edu	36	7	44587880	44587880	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182547	exon2	c.C228T	p.G76G	.	.	.
FIGNL1	63979	hgsc.bcm.edu	36	7	50480618	50480618	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001042762	exon4	c.G1862A	p.R621H	.	.	.
CYTH3	9265	hgsc.bcm.edu	36	7	6171114	6171114	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004227	exon13	c.G1186A	p.A396T	.	.	.
TBL2	26608	hgsc.bcm.edu	36	7	72623573	72623573	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012453	exon6	c.A760G	p.K254E	.	.	.
WBSCR22	114049	hgsc.bcm.edu	36	7	72738906	72738906	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017528	exon3	c.C91T	p.R31W	.	.	.
SEMA3A	10371	hgsc.bcm.edu	36	7	83513693	83513693	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006080	exon6	c.G550A	p.G184R	.	.	.
SAMD9	54809	hgsc.bcm.edu	36	7	92569552	92569552	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001193307	exon2	c.A3795C	p.K1265N	.	.	.
COL1A2	1278	hgsc.bcm.edu	36	7	93888302	93888302	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000089	exon38	c.G2341T	p.G781C	.	.	.
NPTX2	4885	hgsc.bcm.edu	36	7	98095811	98095811	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002523	exon5	c.C1230T	p.V410V	.	.	.
ZKSCAN1	7586	hgsc.bcm.edu	36	7	99469514	99469514	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003439	exon6	c.A1450G	p.T484A	.	.	.
MCM7	4176	hgsc.bcm.edu	36	7	99533213	99533213	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182776	exon8	c.C549T	p.V183V	.	.	.
GAL3ST4	79690	hgsc.bcm.edu	36	7	99595991	99595991	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024637	exon4	c.C957T	p.C319C	.	.	.
C7orf25	79020	hgsc.bcm.edu	36	7	42916048	42916049	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	CT	CT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024054	exon2	c.976_977del	p.326_326del	.	.	.
CLIP2	7461	hgsc.bcm.edu	36	7	73441492	73441494	+	In_Frame_Del	DEL	TCC	TCC	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	TCC	TCC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003388	exon13	c.2687_2689del	p.896_897del	.	.	.
SEC23B	10483	hgsc.bcm.edu	36	20	18439585	18439585	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032986	exon2	c.G106A	p.V36I	.	.	.
STK35	140901	hgsc.bcm.edu	36	20	2045673	2045673	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080836	exon3	c.G1254A	p.S418S	.	.	.
ACSS1	84532	hgsc.bcm.edu	36	20	24951590	24951590	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032501	exon5	c.G946A	p.A316T	.	.	.
ZNF337	26152	hgsc.bcm.edu	36	20	25603786	25603786	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015655	exon5	c.A2138G	p.Y713C	.	.	.
TPX2	22974	hgsc.bcm.edu	36	20	29848922	29848922	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012112	exon16	c.A1888G	p.N630D	.	.	.
ASXL1	171023	hgsc.bcm.edu	36	20	30480817	30480817	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015338	exon6	c.A487T	p.K163X	.	.	.
RALY	22913	hgsc.bcm.edu	36	20	32128237	32128237	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016732	exon7	c.C613T	p.L205L	.	.	.
EIF6	3692	hgsc.bcm.edu	36	20	33331918	33331918	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002212	exon4	c.A322G	p.T108A	.	.	.
EPB41L1	2036	hgsc.bcm.edu	36	20	34271115	34271115	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012156	exon19	c.C2374A	p.L792I	.	.	.
TGIF2	60436	hgsc.bcm.edu	36	20	34653241	34653241	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199513	exon3	c.C707T	p.P236L	.	.	.
SRC	6714	hgsc.bcm.edu	36	20	35455784	35455784	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005417	exon6	c.G423A	p.A141A	.	.	.
KIAA1755	85449	hgsc.bcm.edu	36	20	36275450	36275450	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001029864	exon14	c.G3011C	p.R1004P	.	.	.
MAFB	9935	hgsc.bcm.edu	36	20	38750645	38750645	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005461	exon1	c.G260A	p.W87X	.	.	.
SGK2	10110	hgsc.bcm.edu	36	20	41631484	41631484	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_170693	exon6	c.C274T	p.R92W	SGK2,central_nervous_system,brain,Substitution - Missense,0	.	.
ZMYND8	23613	hgsc.bcm.edu	36	20	45352402	45352402	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012408	exon7	c.C684A	p.G228G	.	.	.
PRNP	5621	hgsc.bcm.edu	36	20	4628437	4628437	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_183079	exon2	c.A571G	p.T191A	.	.	.
PREX1	57580	hgsc.bcm.edu	36	20	46680706	46680706	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020820	exon36	c.G4560A	p.T1520T	.	.	.
PREX1	57580	hgsc.bcm.edu	36	20	46684652	46684652	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020820	exon33	c.C4236A	p.S1412S	.	.	.
PREX1	57580	hgsc.bcm.edu	36	20	46694403	46694403	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020820	exon27	c.C3552A	p.T1184T	.	.	.
ARFGEF2	10564	hgsc.bcm.edu	36	20	47021134	47021134	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006420	exon10	c.G1261A	p.V421I	.	.	.
ZNFX1	57169	hgsc.bcm.edu	36	20	47299619	47299619	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021035	exon14	c.T3349A	p.F1117I	.	.	.
PTGIS	5740	hgsc.bcm.edu	36	20	47561087	47561087	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000961	exon9	c.T1243C	p.S415P	.	.	.
AURKA	6790	hgsc.bcm.edu	36	20	54381908	54381908	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198436	exon8	c.G817A	p.A273T	.	.	.
CASS4	57091	hgsc.bcm.edu	36	20	54446036	54446036	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020356	exon2	c.G446A	p.S149N	.	.	.
ZBP1	81030	hgsc.bcm.edu	36	20	55618620	55618620	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001160417	exon7	c.G1081A	p.E361K	.	.	.
PHACTR3	116154	hgsc.bcm.edu	36	20	57751581	57751581	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080672	exon2	c.C143T	p.A48V	.	.	.
TCFL5	10732	hgsc.bcm.edu	36	20	60959328	60959328	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006602	exon4	c.G1102T	p.G368C	.	.	.
PRPF6	24148	hgsc.bcm.edu	36	20	62124645	62124645	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012469	exon13	c.C1739T	p.A580V	.	.	.
PRPF6	24148	hgsc.bcm.edu	36	20	62131244	62131244	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012469	exon19	c.G2502C	p.L834L	.	.	.
ZHX3	23051	hgsc.bcm.edu	36	20	39264722	39264726	+	Frame_Shift_Del	DEL	TCACA	TCACA	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	TCACA	TCACA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015035	exon3	c.2245_2249del	p.749_750del	.	.	.
DYNC1H1	1778	hgsc.bcm.edu	36	14	101523614	101523614	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001376	exon9	c.C2610T	p.D870D	.	.	.
CDC42BPB	9578	hgsc.bcm.edu	36	14	102544620	102544620	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006035	exon3	c.C293T	p.T98I	.	.	.
CCNB1IP1	57820	hgsc.bcm.edu	36	14	19854283	19854283	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182849	exon4	c.G240A	p.L80L	.	.	.
TEP1	7011	hgsc.bcm.edu	36	14	19922486	19922486	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007110	exon23	c.T3243G	p.G1081G	.	.	.
NDRG2	57447	hgsc.bcm.edu	36	14	20560422	20560422	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016250	exon4	c.G150A	p.A50A	.	.	.
SUPT16H	11198	hgsc.bcm.edu	36	14	20897584	20897584	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007192	exon19	c.C2200T	p.R734W	.	.	.
SALL2	6297	hgsc.bcm.edu	36	14	21060859	21060859	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005407	exon2	c.G2843A	p.G948D	.	.	.
LRRC16B	90668	hgsc.bcm.edu	36	14	23599100	23599100	+	Silent	SNP	C	C	T	rs58283036	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138360	exon23	c.C1950T	p.D650D	.	.	.
ADCY4	196883	hgsc.bcm.edu	36	14	23868479	23868479	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001198592	exon10	c.G1318T	p.G440W	.	.	.
NFATC4	4776	hgsc.bcm.edu	36	14	23911572	23911572	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001136022	exon4	c.C1471A	p.H491N	.	.	.
GZMB	3002	hgsc.bcm.edu	36	14	24170932	24170932	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004131	exon4	c.A572G	p.D191G	.	.	.
AKAP6	9472	hgsc.bcm.edu	36	14	32360666	32360666	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004274	exon13	c.A3896C	p.D1299A	.	.	.
SRP54	6729	hgsc.bcm.edu	36	14	34561902	34561902	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003136	exon14	c.A1192G	p.K398E	.	.	.
FANCM	57697	hgsc.bcm.edu	36	14	44698156	44698156	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020937	exon9	c.A1504T	p.I502F	.	.	.
FRMD6	122786	hgsc.bcm.edu	36	14	51241313	51241313	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152330	exon6	c.A444G	p.A148A	.	.	.
C14orf37	145407	hgsc.bcm.edu	36	14	57675031	57675031	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001001872	exon2	c.G799A	p.A267T	.	.	.
RHOJ	57381	hgsc.bcm.edu	36	14	62805632	62805632	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020663	exon2	c.C230T	p.A77V	.	.	.
PPP2R5E	5529	hgsc.bcm.edu	36	14	62918611	62918611	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006246	exon13	c.T1220C	p.V407A	.	.	.
MAP3K9	4293	hgsc.bcm.edu	36	14	70269458	70269458	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033141	exon12	c.G2423A	p.R808Q	.	.	.
PCNX	22990	hgsc.bcm.edu	36	14	70584278	70584278	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014982	exon22	c.T4162A	p.L1388I	.	.	.
SIPA1L1	26037	hgsc.bcm.edu	36	14	71124846	71124846	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015556	exon2	c.C504T	p.R168R	.	.	.
C14orf43	91748	hgsc.bcm.edu	36	14	73275463	73275463	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001043318	exon2	c.G1002A	p.A334A	.	.	.
C14orf115	55237	hgsc.bcm.edu	36	14	73893719	73893719	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018228	exon2	c.C480T	p.D160D	.	.	.
NEK9	91754	hgsc.bcm.edu	36	14	74631860	74631860	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033116	exon18	c.G2201A	p.R734H	.	.	.
ISM2	145501	hgsc.bcm.edu	36	14	77014744	77014744	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182509	exon4	c.G695A	p.S232N	.	.	.
SNW1	22938	hgsc.bcm.edu	36	14	77287522	77287522	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012245	exon3	c.G223A	p.D75N	.	.	.
ADCK1	57143	hgsc.bcm.edu	36	14	77355145	77355145	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142545	exon2	c.A71G	p.Y24C	.	.	.
NRXN3	9369	hgsc.bcm.edu	36	14	79397889	79397889	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138970	exon6	c.C1128T	p.Y376Y	.	.	.
GTF2A1	2957	hgsc.bcm.edu	36	14	80740171	80740171	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015859	exon3	c.G163A	p.A55T	.	.	.
C14orf102	55051	hgsc.bcm.edu	36	14	89852739	89852739	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017970	exon3	c.G343A	p.D115N	.	.	.
CPSF2	53981	hgsc.bcm.edu	36	14	91679206	91679206	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017437	exon9	c.C955T	p.R319C	.	.	.
KIAA1409	57578	hgsc.bcm.edu	36	14	93114068	93114068	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020818	exon18	c.G1808A	p.G603E	.	.	.
SERPINA12	145264	hgsc.bcm.edu	36	14	94034435	94034435	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173850	exon3	c.A53G	p.K18R	.	.	.
SERPINA3	12	hgsc.bcm.edu	36	14	94158471	94158471	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001085	exon4	c.A958C	p.R320R	.	.	.
PAPOLA	10914	hgsc.bcm.edu	36	14	96092471	96092471	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032632	exon19	c.G1972A	p.E658K	.	.	.
SAMD4A	23034	hgsc.bcm.edu	36	14	54273542	54273545	+	Frame_Shift_Del	DEL	ACCC	ACCC	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	ACCC	ACCC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015589	exon3	c.763_766del	p.255_256del	.	.	.
ARG2	384	hgsc.bcm.edu	36	14	67178820	67178822	+	In_Frame_Del	DEL	GGA	GGA	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	GGA	GGA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001172	exon3	c.349_351del	p.117_117del	.	.	.
PI4KA	5297	hgsc.bcm.edu	36	22	19402002	19402002	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002650	exon13	c.C1567T	p.Q523X	.	.	.
PPM1F	9647	hgsc.bcm.edu	36	22	20623947	20623947	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014634	exon3	c.A312G	p.E104E	.	.	.
CABIN1	23523	hgsc.bcm.edu	36	22	22790606	22790606	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199281	exon15	c.C1993T	p.R665W	.	.	.
CRYBB1	1414	hgsc.bcm.edu	36	22	25327911	25327911	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001887	exon5	c.C507T	p.D169D	.	.	.
MTMR3	8897	hgsc.bcm.edu	36	22	28748071	28748071	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021090	exon18	c.C3279T	p.C1093C	.	.	.
HMOX1	3162	hgsc.bcm.edu	36	22	34112872	34112872	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002133	exon3	c.C339T	p.R113R	.	.	.
MCM5	4174	hgsc.bcm.edu	36	22	34147330	34147330	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006739	exon15	c.C1852T	p.R618C	.	.	.
CACNG2	10369	hgsc.bcm.edu	36	22	35428526	35428526	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006078	exon1	c.C42T	p.T14T	.	.	.
SOX10	6663	hgsc.bcm.edu	36	22	36699517	36699517	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006941	exon4	c.C1332A	p.P444P	.	.	.
EP300	2033	hgsc.bcm.edu	36	22	39903536	39903536	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001429	exon31	c.A5875G	p.M1959V	.	.	.
L3MBTL2	83746	hgsc.bcm.edu	36	22	39950940	39950940	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031488	exon11	c.C1275T	p.G425G	.	.	.
TCF20	6942	hgsc.bcm.edu	36	22	40894649	40894649	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005650	exon4	c.A5837G	p.K1946R	.	.	.
FBLN1	2192	hgsc.bcm.edu	36	22	44316736	44316736	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006487	exon10	c.G1104A	p.G368G	.	.	.
PKDREJ	10343	hgsc.bcm.edu	36	22	45035035	45035035	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006071	exon1	c.C2849T	p.A950V	.	.	.
ZBED4	9889	hgsc.bcm.edu	36	22	48664633	48664633	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014838	exon2	c.T1319G	p.L440W	.	.	.
ALG12	79087	hgsc.bcm.edu	36	22	48683904	48683904	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024105	exon9	c.G1165A	p.V389I	.	.	.
NF2	4771	hgsc.bcm.edu	36	22	28400879	28400879	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000268	exon13	c.G1395A	p.E465E	.	.	.
DNMT1	1786	hgsc.bcm.edu	36	19	10112811	10112811	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130823	exon31	c.C3364T	p.P1122S	.	.	.
MRPL4	51073	hgsc.bcm.edu	36	19	10226272	10226272	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_146388	exon4	c.A283T	p.I95L	.	.	.
TYK2	7297	hgsc.bcm.edu	36	19	10322746	10322746	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003331	exon24	c.C3411T	p.P1137P	.	.	.
PDE4A	5141	hgsc.bcm.edu	36	19	10438875	10438875	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001111309	exon15	c.G2056T	p.D686Y	.	.	.
GCDH	2639	hgsc.bcm.edu	36	19	12871342	12871342	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000159	exon12	c.C1304T	p.T435M	.	.	.
NDUFB7	4713	hgsc.bcm.edu	36	19	14538707	14538707	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004146	exon2	c.C151T	p.L51L	.	.	.
OR7A5	26659	hgsc.bcm.edu	36	19	14799690	14799690	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017506	exon1	c.C364T	p.R122W	.	.	.
NOTCH3	4854	hgsc.bcm.edu	36	19	15152013	15152013	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000435	exon20	c.G3197A	p.S1066N	.	.	.
CYP4F22	126410	hgsc.bcm.edu	36	19	15501611	15501611	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173483	exon4	c.C314T	p.P105L	.	.	.
CYP4F12	66002	hgsc.bcm.edu	36	19	15667862	15667862	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_023944	exon10	c.G1232A	p.G411D	.	.	.
USHBP1	83878	hgsc.bcm.edu	36	19	17230048	17230048	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031941	exon8	c.C1193T	p.A398V	.	.	.
KIAA1683	80726	hgsc.bcm.edu	36	19	18237953	18237953	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025249	exon3	c.A1397G	p.N466S	.	.	.
FKBP8	23770	hgsc.bcm.edu	36	19	18511472	18511472	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012181	exon3	c.G351A	p.P117P	.	.	.
GMIP	51291	hgsc.bcm.edu	36	19	19610242	19610242	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016573	exon8	c.A587G	p.K196R	.	.	.
TMPRSS9	360200	hgsc.bcm.edu	36	19	2340785	2340785	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182973	exon1	c.T2C	p.M1T	.	.	.
TLE6	79816	hgsc.bcm.edu	36	19	2945023	2945023	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001143986	exon16	c.G1544A	p.W515X	.	.	.
CCNE1	898	hgsc.bcm.edu	36	19	35006520	35006520	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_057182	exon10	c.C1184T	p.A395V	.	.	.
ZNF507	22847	hgsc.bcm.edu	36	19	37536813	37536813	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001136156	exon3	c.C1237T	p.R413C	.	.	.
DPY19L3	147991	hgsc.bcm.edu	36	19	37619313	37619313	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001172774	exon5	c.G450A	p.Q150Q	.	.	.
C19orf40	91442	hgsc.bcm.edu	36	19	38155994	38155994	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152266	exon2	c.C52T	p.H18Y	.	.	.
GPATCH1	55094	hgsc.bcm.edu	36	19	38309459	38309459	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018025	exon19	c.G2745A	p.S915S	.	.	.
PDCD2L	84306	hgsc.bcm.edu	36	19	39608745	39608745	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032346	exon7	c.G957A	p.V319V	.	.	.
HPN	3249	hgsc.bcm.edu	36	19	40248725	40248725	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002151	exon13	c.C1164T	p.G388G	.	.	.
CD22	933	hgsc.bcm.edu	36	19	40528456	40528456	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001185101	exon10	c.C1789T	p.R597X	.	.	.
ATP4A	495	hgsc.bcm.edu	36	19	40745988	40745988	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000704	exon3	c.C179T	p.A60V	.	.	.
ZBTB32	27033	hgsc.bcm.edu	36	19	40899394	40899394	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014383	exon6	c.T1364C	p.L455P	.	.	.
THAP8	199745	hgsc.bcm.edu	36	19	41222397	41222397	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152658	exon3	c.A340G	p.T114A	.	.	.
WDR62	284403	hgsc.bcm.edu	36	19	41283490	41283490	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001083961	exon23	c.T2740G	p.S914A	.	.	.
STAP2	55620	hgsc.bcm.edu	36	19	4276421	4276421	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001013841	exon10	c.C951T	p.G317G	.	.	.
SIPA1L3	23094	hgsc.bcm.edu	36	19	43347169	43347169	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015073	exon15	c.C3991T	p.P1331S	.	.	.
RYR1	6261	hgsc.bcm.edu	36	19	43634296	43634296	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001042723	exon12	c.G1175A	p.C392Y	.	.	.
ZNF780A	284323	hgsc.bcm.edu	36	19	45272300	45272300	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142578	exon6	c.G1889A	p.R630H	.	.	.
HNRNPUL1	11100	hgsc.bcm.edu	36	19	46469920	46469920	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144732	exon3	c.G212A	p.R71Q	.	.	.
EXOSC5	56915	hgsc.bcm.edu	36	19	46590719	46590719	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020158	exon2	c.C155T	p.T52I	.	.	.
ERF	2077	hgsc.bcm.edu	36	19	47445822	47445822	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006494	exon3	c.G370A	p.A124T	.	.	.
M6PRBP1	10226	hgsc.bcm.edu	36	19	4790394	4790394	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001164194	exon8	c.C1079T	p.T360M	.	.	.
ZNF224	7767	hgsc.bcm.edu	36	19	49303367	49303367	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013398	exon6	c.G1214A	p.C405Y	.	.	.
ZNF224	7767	hgsc.bcm.edu	36	19	49304106	49304106	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013398	exon6	c.A1953G	p.P651P	.	.	.
BCL3	602	hgsc.bcm.edu	36	19	49954590	49954590	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005178	exon9	c.C1243A	p.P415T	.	.	.
MARK4	57787	hgsc.bcm.edu	36	19	50475818	50475818	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199867	exon12	c.G1262T	p.R421M	.	.	.
PTPRS	5802	hgsc.bcm.edu	36	19	5176777	5176777	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002850	exon17	c.G2455A	p.A819T	.	.	.
GPR77	27202	hgsc.bcm.edu	36	19	52536190	52536190	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018485	exon2	c.C294T	p.G98G	.	.	.
PLA2G4C	8605	hgsc.bcm.edu	36	19	53257149	53257149	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001159323	exon14	c.C1175T	p.T392I	.	.	.
KCNJ14	3770	hgsc.bcm.edu	36	19	53659605	53659605	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013348	exon3	c.G1070T	p.G357V	.	.	.
PPFIA3	8541	hgsc.bcm.edu	36	19	54324514	54324514	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003660	exon5	c.C573T	p.S191S	.	.	.
RCN3	57333	hgsc.bcm.edu	36	19	54732257	54732257	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020650	exon4	c.C601T	p.R201W	.	.	.
POLD1	5424	hgsc.bcm.edu	36	19	55609918	55609918	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002691	exon20	c.G2423A	p.R808H	.	.	.
ZNF350	59348	hgsc.bcm.edu	36	19	57164145	57164145	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021632	exon3	c.C67A	p.Q23K	.	.	.
ZNF614	80110	hgsc.bcm.edu	36	19	57213454	57213454	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025040	exon3	c.T121C	p.Y41H	.	.	.
ZNF816A	125893	hgsc.bcm.edu	36	19	58145874	58145874	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001031665	exon5	c.C966T	p.F322F	.	.	.
VN1R4	317703	hgsc.bcm.edu	36	19	58462110	58462110	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173857	exon1	c.C621T	p.H207H	.	.	.
RPS9	6203	hgsc.bcm.edu	36	19	59401970	59401970	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001013	exon4	c.C235T	p.R79W	.	.	.
BRSK1	84446	hgsc.bcm.edu	36	19	60509507	60509507	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032430	exon17	c.G1966A	p.V656I	.	.	.
PEG3	5178	hgsc.bcm.edu	36	19	62017914	62017914	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001146186	exon7	c.T3708A	p.H1236Q	.	.	.
ZNF547	284306	hgsc.bcm.edu	36	19	62580578	62580578	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173631	exon4	c.C422T	p.P141L	.	.	.
ZNF547	284306	hgsc.bcm.edu	36	19	62580590	62580590	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173631	exon4	c.A434T	p.K145M	.	.	.
ACER1	125981	hgsc.bcm.edu	36	19	6260776	6260776	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133492	exon4	c.G420A	p.T140T	.	.	.
ZNF329	79673	hgsc.bcm.edu	36	19	63331982	63331982	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024620	exon4	c.A701T	p.N234I	.	.	.
FCER2	2208	hgsc.bcm.edu	36	19	7661121	7661121	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002002	exon10	c.G652T	p.G218C	.	.	.
CD209	30835	hgsc.bcm.edu	36	19	7715881	7715881	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001144894	exon3	c.C714T	p.T238T	.	.	.
ZNF559	84527	hgsc.bcm.edu	36	19	9314181	9314181	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032497	exon6	c.C1054T	p.P352S	.	.	.
PRMT1	3276	hgsc.bcm.edu	36	19	54883245	54883247	+	In_Frame_Del	DEL	CAC	CAC	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	CAC	CAC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198318	exon10	c.993_995del	p.331_332del	.	.	.
FCGBP	8857	hgsc.bcm.edu	36	19	45100661	45100661	+	Missense_Mutation	SNP	C	G	G	rs45613437	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003890	exon8	c.G4018C	p.V1340L	.	.	.
AZIN1	51582	hgsc.bcm.edu	36	8	103921121	103921121	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015878	exon5	c.G209A	p.C70Y	.	.	.
LRP12	29967	hgsc.bcm.edu	36	8	105572175	105572175	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013437	exon7	c.C2482T	p.R828C	.	.	.
KCNV1	27012	hgsc.bcm.edu	36	8	111049511	111049511	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014379	exon3	c.A1485G	p.G495G	.	.	.
CSMD3	114788	hgsc.bcm.edu	36	8	113377382	113377382	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198123	exon54	c.G8470A	p.V2824M	.	.	.
NEIL2	252969	hgsc.bcm.edu	36	8	11681164	11681164	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001135748	exon5	c.G624A	p.E208E	.	.	.
NDRG1	10397	hgsc.bcm.edu	36	8	134343504	134343504	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001135242	exon5	c.C294A	p.G98G	.	.	.
KHDRBS3	10656	hgsc.bcm.edu	36	8	136630317	136630317	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006558	exon4	c.C463A	p.L155I	.	.	.
TRAPPC9	83696	hgsc.bcm.edu	36	8	140967395	140967395	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001160372	exon21	c.C2965G	p.P989A	.	.	.
DENND3	22898	hgsc.bcm.edu	36	8	142217362	142217362	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014957	exon3	c.G205A	p.D69N	.	.	.
SGCZ	137868	hgsc.bcm.edu	36	8	14456712	14456712	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139167	exon2	c.G134A	p.R45Q	.	.	.
ZNF596	169270	hgsc.bcm.edu	36	8	185559	185559	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001042416	exon6	c.C712A	p.L238I	.	.	.
BMP1	649	hgsc.bcm.edu	36	8	22087103	22087103	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006129	exon2	c.G192A	p.R64R	.	.	.
BMP1	649	hgsc.bcm.edu	36	8	22091396	22091396	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006129	exon6	c.G817A	p.A273T	.	.	.
PIWIL2	55124	hgsc.bcm.edu	36	8	22221475	22221475	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018068	exon14	c.G1630A	p.A544T	.	.	.
PIWIL2	55124	hgsc.bcm.edu	36	8	22229720	22229720	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018068	exon19	c.C2226T	p.I742I	.	.	.
KIAA1967	57805	hgsc.bcm.edu	36	8	22528980	22528980	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021174	exon12	c.A1303C	p.T435P	.	.	.
DOCK5	80005	hgsc.bcm.edu	36	8	25157163	25157163	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024940	exon2	c.A100G	p.T34A	.	.	.
CLU	1191	hgsc.bcm.edu	36	8	27523976	27523976	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001171138	exon2	c.G63A	p.G21G	.	.	.
SCARA3	51435	hgsc.bcm.edu	36	8	27564968	27564968	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182826	exon3	c.G131A	p.R44H	.	.	.
FZD3	7976	hgsc.bcm.edu	36	8	28441304	28441304	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145866	exon4	c.G1108A	p.A370T	.	.	.
TEX15	56154	hgsc.bcm.edu	36	8	30824227	30824227	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031271	exon1	c.G1849A	p.D617N	.	.	.
C8orf41	80185	hgsc.bcm.edu	36	8	33489080	33489080	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025115	exon1	c.T594C	p.D198D	.	.	.
RAB11FIP1	80223	hgsc.bcm.edu	36	8	37851478	37851478	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025151	exon3	c.T1335C	p.D445D	.	.	.
ADRB3	155	hgsc.bcm.edu	36	8	37942095	37942095	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000025	exon1	c.G1050A	p.P350P	.	.	.
ZMAT4	79698	hgsc.bcm.edu	36	8	40802305	40802305	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024645	exon2	c.C48A	p.C16X	.	.	.
ANK1	286	hgsc.bcm.edu	36	8	41710652	41710652	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020475	exon3	c.A222G	p.T74T	.	.	.
SLC20A2	6575	hgsc.bcm.edu	36	8	42413961	42413961	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006749	exon8	c.C1226T	p.A409V	.	.	.
MCM4	4173	hgsc.bcm.edu	36	8	49049998	49049998	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182746	exon15	c.G2288A	p.R763H	.	.	.
RB1CC1	9821	hgsc.bcm.edu	36	8	53751525	53751525	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001083617	exon6	c.A529C	p.N177H	.	.	.
TOX	9760	hgsc.bcm.edu	36	8	59890734	59890734	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014729	exon7	c.A1109G	p.Y370C	.	.	.
CNGB3	54714	hgsc.bcm.edu	36	8	87748411	87748411	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019098	exon6	c.C710T	p.P237L	.	.	.
SLC26A7	115111	hgsc.bcm.edu	36	8	92421920	92421920	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_134266	exon8	c.G991A	p.A331T	.	.	.
INTS8	55656	hgsc.bcm.edu	36	8	95918005	95918005	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017864	exon7	c.A831T	p.K277N	.	.	.
NIPAL2	79815	hgsc.bcm.edu	36	8	99286543	99286543	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024759	exon7	c.A763G	p.M255V	.	.	.
KDM5D	8284	hgsc.bcm.edu	36	Y	20363019	20363019	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004653	exon4	c.G341A	p.S114N	.	.	.
TBL1Y	90665	hgsc.bcm.edu	36	Y	7014357	7014357	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033284	exon16	c.C1179T	p.C393C	.	.	.
KIF1B	23095	hgsc.bcm.edu	36	1	10308907	10308907	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015074	exon25	c.G2689A	p.A897T	.	.	.
MYBPHL	343263	hgsc.bcm.edu	36	1	109641331	109641331	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001010985	exon4	c.G434A	p.R145K	.	.	.
AMPD2	271	hgsc.bcm.edu	36	1	109969874	109969874	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004037	exon3	c.G452A	p.S151N	.	.	.
MASP2	10747	hgsc.bcm.edu	36	1	11025611	11025611	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006610	exon6	c.G797T	p.R266M	.	.	.
C1orf88	128344	hgsc.bcm.edu	36	1	111691882	111691882	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181643	exon3	c.G223A	p.A75T	.	.	.
DCLRE1B	64858	hgsc.bcm.edu	36	1	114255658	114255658	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022836	exon4	c.G921T	p.Q307H	.	.	.
DENND2C	163259	hgsc.bcm.edu	36	1	114962587	114962587	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198459	exon5	c.G1096T	p.G366W	.	.	.
VANGL1	81839	hgsc.bcm.edu	36	1	116007918	116007918	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001172411	exon4	c.T312A	p.D104E	.	.	.
TRIM45	80263	hgsc.bcm.edu	36	1	117462758	117462758	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145635	exon2	c.G643A	p.V215M	.	.	.
MIIP	60672	hgsc.bcm.edu	36	1	12011903	12011903	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021933	exon6	c.C693T	p.S231S	.	.	.
DHRS3	9249	hgsc.bcm.edu	36	1	12555356	12555356	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004753	exon5	c.G811A	p.V271I	.	.	.
PRDM2	7799	hgsc.bcm.edu	36	1	13977959	13977959	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001007257	exon3	c.C479A	p.P160Q	.	.	.
PDE4DIP	9659	hgsc.bcm.edu	36	1	143628890	143628890	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001198832	exon15	c.G1769A	p.R590H	.	.	.
ACP6	51205	hgsc.bcm.edu	36	1	145592954	145592954	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016361	exon6	c.G759A	p.L253L	.	.	.
PRPF3	9129	hgsc.bcm.edu	36	1	148564107	148564107	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004698	exon2	c.C83A	p.P28H	.	.	.
ZNF687	57592	hgsc.bcm.edu	36	1	149529305	149529305	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020832	exon7	c.C3048T	p.H1016H	.	.	.
PSMB4	5692	hgsc.bcm.edu	36	1	149638798	149638798	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002796	exon1	c.A111G	p.A37A	.	.	.
NPR1	4881	hgsc.bcm.edu	36	1	151926182	151926182	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000906	exon12	c.G1930A	p.V644I	.	.	.
INTS3	65123	hgsc.bcm.edu	36	1	151999488	151999488	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_023015	exon12	c.C1315T	p.R439C	.	.	.
DCST2	127579	hgsc.bcm.edu	36	1	153263687	153263687	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144622	exon11	c.C1627A	p.L543M	.	.	.
C1orf2	10712	hgsc.bcm.edu	36	1	153490548	153490548	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006589	exon3	c.T344G	p.L115R	.	.	.
HCN3	57657	hgsc.bcm.edu	36	1	153522220	153522220	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020897	exon6	c.G1318A	p.V440I	.	.	.
ASH1L	55870	hgsc.bcm.edu	36	1	153757689	153757689	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018489	exon2	c.G246T	p.E82D	.	.	.
IQGAP3	128239	hgsc.bcm.edu	36	1	154770929	154770929	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178229	exon29	c.A3728G	p.H1243R	.	.	.
CD1A	909	hgsc.bcm.edu	36	1	156493922	156493922	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001763	exon5	c.G971T	p.R324L	.	.	.
OR10J3	441911	hgsc.bcm.edu	36	1	157550577	157550577	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001004467	exon1	c.G497A	p.G166D	.	.	.
SLAMF8	56833	hgsc.bcm.edu	36	1	158066389	158066389	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020125	exon2	c.G150A	p.W50X	.	.	.
VSIG8	391123	hgsc.bcm.edu	36	1	158095234	158095234	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001013661	exon2	c.C142A	p.L48M	.	.	.
KCNJ9	3765	hgsc.bcm.edu	36	1	158320586	158320586	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004983	exon2	c.C142A	p.L48M	.	.	.
IGSF8	93185	hgsc.bcm.edu	36	1	158329476	158329476	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052868	exon4	c.C1174T	p.R392W	.	.	.
PVRL4	81607	hgsc.bcm.edu	36	1	159309092	159309092	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030916	exon9	c.C1516T	p.R506W	.	.	.
C1orf192	257177	hgsc.bcm.edu	36	1	159602039	159602039	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001013625	exon4	c.C249A	p.S83S	.	.	.
ATF6	22926	hgsc.bcm.edu	36	1	160056072	160056072	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007348	exon8	c.G935A	p.R312H	.	.	.
OLFML2B	25903	hgsc.bcm.edu	36	1	160221281	160221281	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015441	exon7	c.G1588A	p.V530I	.	.	.
CLCNKA	1187	hgsc.bcm.edu	36	1	16230858	16230858	+	Silent	SNP	G	G	A	rs5254	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004070	exon16	c.G1689A	p.P563P	.	.	.
EPHA2	1969	hgsc.bcm.edu	36	1	16347879	16347879	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004431	exon3	c.A404T	p.Q135L	.	.	.
FBXO42	54455	hgsc.bcm.edu	36	1	16452734	16452734	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018994	exon7	c.C847A	p.R283R	.	.	.
RCSD1	92241	hgsc.bcm.edu	36	1	165933312	165933312	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052862	exon6	c.C827T	p.P276L	.	.	.
ATP1B1	481	hgsc.bcm.edu	36	1	167347276	167347276	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001677	exon2	c.G142T	p.G48C	.	.	.
F5	2153	hgsc.bcm.edu	36	1	167761853	167761853	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000130	exon18	c.G5626T	p.A1876S	.	.	.
PRRX1	5396	hgsc.bcm.edu	36	1	168962015	168962015	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006902	exon3	c.C448T	p.R150C	.	.	.
VAMP4	8674	hgsc.bcm.edu	36	1	169942134	169942134	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001185127	exon7	c.T390C	p.I130I	.	.	.
TNN	63923	hgsc.bcm.edu	36	1	173354433	173354433	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022093	exon11	c.G2500A	p.A834T	.	.	.
TNN	63923	hgsc.bcm.edu	36	1	173371650	173371650	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022093	exon16	c.G3377A	p.W1126X	.	.	.
RFWD2	64326	hgsc.bcm.edu	36	1	174279485	174279485	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022457	exon13	c.G1514T	p.R505M	.	.	.
FAM5B	57795	hgsc.bcm.edu	36	1	175512112	175512112	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021165	exon6	c.G931A	p.A311T	.	.	.
C1orf125	126859	hgsc.bcm.edu	36	1	177680782	177680782	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144696	exon16	c.G1618A	p.D540N	.	.	.
LAMC2	3918	hgsc.bcm.edu	36	1	181471412	181471412	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018891	exon16	c.C2380T	p.R794C	.	.	.
HMCN1	83872	hgsc.bcm.edu	36	1	184237379	184237379	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031935	exon28	c.A4231G	p.N1411D	.	.	.
KLHDC7A	127707	hgsc.bcm.edu	36	1	18680878	18680878	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152375	exon1	c.G816T	p.E272D	.	.	.
PAX7	5081	hgsc.bcm.edu	36	1	18899765	18899765	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013945	exon6	c.G812A	p.R271H	.	.	.
KCNT2	343450	hgsc.bcm.edu	36	1	194551680	194551680	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198503	exon21	c.T2448C	p.D816D	.	.	.
ASPM	259266	hgsc.bcm.edu	36	1	195326661	195326661	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018136	exon23	c.G9578T	p.R3193L	.	.	.
ASPM	259266	hgsc.bcm.edu	36	1	195339065	195339065	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018136	exon18	c.A5939G	p.Y1980C	.	.	.
ZBTB41	360023	hgsc.bcm.edu	36	1	195424114	195424114	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_194314	exon4	c.T1477C	p.C493R	.	.	.
LHX9	56956	hgsc.bcm.edu	36	1	196163422	196163422	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020204	exon4	c.G812A	p.R271Q	.	.	.
PTPRC	5788	hgsc.bcm.edu	36	1	196967425	196967425	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080921	exon15	c.A1432G	p.T478A	.	.	.
CACNA1S	779	hgsc.bcm.edu	36	1	199284796	199284796	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000069	exon35	c.T4296C	p.P1432P	.	.	.
CACNA1S	779	hgsc.bcm.edu	36	1	199347976	199347976	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000069	exon1	c.C115A	p.P39T	.	.	.
RNPEP	6051	hgsc.bcm.edu	36	1	200225259	200225259	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020216	exon3	c.G714T	p.L238L	.	.	.
FMOD	2331	hgsc.bcm.edu	36	1	201578110	201578110	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002023	exon3	c.G1115A	p.S372N	.	.	.
NFASC	23114	hgsc.bcm.edu	36	1	203209131	203209131	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001160331	exon10	c.C1273T	p.H425Y	.	.	.
DYRK3	8444	hgsc.bcm.edu	36	1	204888838	204888838	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003582	exon3	c.G1672A	p.V558I	.	.	.
CAMK1G	57172	hgsc.bcm.edu	36	1	207852828	207852828	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020439	exon12	c.C1416T	p.V472V	.	.	.
SYT14	255928	hgsc.bcm.edu	36	1	208340229	208340229	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153262	exon6	c.C964A	p.P322T	.	.	.
KIF17	57576	hgsc.bcm.edu	36	1	20889279	20889279	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001122819	exon7	c.G1370A	p.R457Q	.	.	.
ANGEL2	90806	hgsc.bcm.edu	36	1	211245163	211245163	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144567	exon5	c.G969A	p.T323T	.	.	.
PROX1	5629	hgsc.bcm.edu	36	1	212236707	212236707	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002763	exon2	c.T206A	p.V69E	.	.	.
CENPF	1063	hgsc.bcm.edu	36	1	212885916	212885916	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016343	exon13	c.G6380A	p.R2127H	.	.	.
USH2A	7399	hgsc.bcm.edu	36	1	213887536	213887536	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_206933	exon67	c.G14742A	p.E4914E	.	.	.
GPATCH2	55105	hgsc.bcm.edu	36	1	215859950	215859950	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018040	exon2	c.C571T	p.Q191X	.	.	.
GPATCH2	55105	hgsc.bcm.edu	36	1	215860277	215860277	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018040	exon2	c.T244C	p.W82R	.	.	.
SPATA17	128153	hgsc.bcm.edu	36	1	215871351	215871351	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138796	exon1	c.C8T	p.T3M	.	.	.
EPRS	2058	hgsc.bcm.edu	36	1	218270359	218270359	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004446	exon6	c.G615T	p.E205D	.	.	.
RAB3GAP2	25782	hgsc.bcm.edu	36	1	218412678	218412678	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012414	exon22	c.G2340T	p.K780N	.	.	.
MOSC1	64757	hgsc.bcm.edu	36	1	219037883	219037883	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022746	exon4	c.G657A	p.A219A	.	.	.
USP48	84196	hgsc.bcm.edu	36	1	21904914	21904914	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032236	exon19	c.G2277A	p.K759K	.	.	.
HSPG2	3339	hgsc.bcm.edu	36	1	22073787	22073787	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005529	exon27	c.G3437A	p.R1146H	.	.	.
DISP1	84976	hgsc.bcm.edu	36	1	221245352	221245352	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032890	exon8	c.G3990A	p.T1330T	.	.	.
NVL	4931	hgsc.bcm.edu	36	1	222558155	222558155	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002533	exon9	c.C853T	p.R285C	.	.	.
EPHX1	2052	hgsc.bcm.edu	36	1	224099601	224099601	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001136018	exon9	c.C1298T	p.A433V	.	.	.
LEFTY2	7044	hgsc.bcm.edu	36	1	224191911	224191911	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001172425	exon5	c.C852A	p.A284A	.	.	.
CDC42BPA	8476	hgsc.bcm.edu	36	1	225397293	225397293	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014826	exon9	c.T1199C	p.V400A	.	.	.
C1QC	714	hgsc.bcm.edu	36	1	22846616	22846616	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_172369	exon3	c.G491A	p.G164D	.	.	.
CAPN9	10753	hgsc.bcm.edu	36	1	228981421	228981421	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016452	exon8	c.G955A	p.A319T	.	.	.
CHML	1122	hgsc.bcm.edu	36	1	239865380	239865380	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001821	exon1	c.C312T	p.Y104Y	.	.	.
WDR64	128025	hgsc.bcm.edu	36	1	240031086	240031086	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144625	exon27	c.T3192A	p.N1064K	.	.	.
CCDC21	64793	hgsc.bcm.edu	36	1	26438874	26438874	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022778	exon2	c.G13A	p.E5K	.	.	.
CCDC21	64793	hgsc.bcm.edu	36	1	26471139	26471139	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022778	exon11	c.C1784T	p.S595L	.	.	.
LIN28	79727	hgsc.bcm.edu	36	1	26625321	26625321	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024674	exon4	c.T415A	p.C139S	.	.	.
MECR	51102	hgsc.bcm.edu	36	1	29402301	29402301	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001024732	exon5	c.C354T	p.S118S	.	.	.
TSSK3	81629	hgsc.bcm.edu	36	1	32602124	32602124	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052841	exon2	c.C487T	p.R163W	.	.	.
CSF3R	1441	hgsc.bcm.edu	36	1	36705453	36705453	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_172313	exon16	c.A2005G	p.S669G	.	.	.
KIAA0562	9731	hgsc.bcm.edu	36	1	3721906	3721906	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014704	exon22	c.G2698C	p.G900R	.	.	.
DNALI1	7802	hgsc.bcm.edu	36	1	37800285	37800285	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003462	exon5	c.C659T	p.T220M	.	.	.
MTF1	4520	hgsc.bcm.edu	36	1	38060862	38060862	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005955	exon9	c.G1285A	p.E429K	.	.	.
MTF1	4520	hgsc.bcm.edu	36	1	38095557	38095557	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005955	exon2	c.G361A	p.A121T	.	.	.
FHL3	2275	hgsc.bcm.edu	36	1	38235975	38235975	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004468	exon5	c.C656G	p.P219R	.	.	.
MACF1	23499	hgsc.bcm.edu	36	1	39626699	39626699	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012090	exon54	c.A9412G	p.R3138G	.	.	.
KCNQ4	9132	hgsc.bcm.edu	36	1	41073276	41073276	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004700	exon12	c.C1664T	p.P555L	.	.	.
EBNA1BP2	10969	hgsc.bcm.edu	36	1	43409788	43409788	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006824	exon3	c.A272G	p.K91R	.	.	.
WDR65	149465	hgsc.bcm.edu	36	1	43419923	43419923	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001167966	exon3	c.C289T	p.R97C	.	.	.
GPBP1L1	60313	hgsc.bcm.edu	36	1	45893061	45893061	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021639	exon6	c.G218A	p.R73H	.	.	.
IPP	3652	hgsc.bcm.edu	36	1	45967878	45967878	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005897	exon4	c.C875T	p.A292V	.	.	.
RAD54L	8438	hgsc.bcm.edu	36	1	46498344	46498344	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142548	exon6	c.G393A	p.Q131Q	.	.	.
FAF1	11124	hgsc.bcm.edu	36	1	50944062	50944062	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007051	exon7	c.G641A	p.S214N	.	.	.
MRPL37	51253	hgsc.bcm.edu	36	1	54438813	54438813	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016491	exon1	c.C309T	p.A103A	.	.	.
ACOT11	26027	hgsc.bcm.edu	36	1	54832300	54832300	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_147161	exon5	c.G471T	p.K157N	.	.	.
OMA1	115209	hgsc.bcm.edu	36	1	58744352	58744352	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145243	exon8	c.C1333T	p.R445X	.	.	.
CHD5	26038	hgsc.bcm.edu	36	1	6119202	6119202	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015557	exon17	c.G2658C	p.L886L	.	.	.
NFIA	4774	hgsc.bcm.edu	36	1	61621599	61621599	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145512	exon8	c.A1184T	p.H395L	.	.	.
L1TD1	54596	hgsc.bcm.edu	36	1	62445102	62445102	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019079	exon3	c.A214G	p.T72A	.	.	.
DOCK7	85440	hgsc.bcm.edu	36	1	62780884	62780884	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033407	exon24	c.T2935C	p.F979L	.	.	.
DOCK7	85440	hgsc.bcm.edu	36	1	62886406	62886406	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033407	exon6	c.C691T	p.R231C	.	.	.
SGIP1	84251	hgsc.bcm.edu	36	1	66874262	66874262	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032291	exon4	c.G147A	p.A49A	.	.	.
SGIP1	84251	hgsc.bcm.edu	36	1	66920381	66920381	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032291	exon15	c.C1056A	p.L352L	.	.	.
SLC35D1	23169	hgsc.bcm.edu	36	1	67280584	67280584	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015139	exon8	c.G652A	p.G218R	.	.	.
LRRC7	57554	hgsc.bcm.edu	36	1	69998586	69998586	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020794	exon1	c.G111A	p.V37V	.	.	.
SLC44A5	204962	hgsc.bcm.edu	36	1	75458104	75458104	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152697	exon15	c.A1147T	p.I383F	.	.	.
SLC44A5	204962	hgsc.bcm.edu	36	1	75481193	75481193	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152697	exon8	c.G437A	p.R146H	.	.	.
RABGGTB	5876	hgsc.bcm.edu	36	1	76032831	76032831	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004582	exon9	c.G904A	p.G302R	.	.	.
RABGGTB	5876	hgsc.bcm.edu	36	1	76032917	76032917	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004582	exon9	c.G990A	p.V330V	.	.	.
PIGK	10026	hgsc.bcm.edu	36	1	77407590	77407590	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005482	exon4	c.G318T	p.K106N	.	.	.
VAMP3	9341	hgsc.bcm.edu	36	1	7759896	7759896	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004781	exon3	c.G162T	p.Q54H	.	.	.
USP33	23032	hgsc.bcm.edu	36	1	77939645	77939645	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015017	exon23	c.G2599A	p.G867R	.	.	.
TNFRSF9	3604	hgsc.bcm.edu	36	1	7921416	7921416	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001561	exon4	c.T160C	p.S54P	.	.	.
SLC45A1	50651	hgsc.bcm.edu	36	1	8308601	8308601	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001080397	exon3	c.G627A	p.S209S	.	.	.
CTBS	1486	hgsc.bcm.edu	36	1	84802077	84802077	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004388	exon5	c.A724G	p.I242V	.	.	.
MCOLN3	55283	hgsc.bcm.edu	36	1	85283466	85283466	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018298	exon2	c.C166T	p.R56X	.	.	.
GBP6	163351	hgsc.bcm.edu	36	1	89620120	89620120	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198460	exon7	c.T1151C	p.M384T	.	.	.
SLC2A7	155184	hgsc.bcm.edu	36	1	9001886	9001886	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207420	exon4	c.C405T	p.V135V	.	.	.
TMEM56	148534	hgsc.bcm.edu	36	1	95429954	95429954	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152487	exon7	c.T734C	p.I245T	.	.	.
LPPR4	9890	hgsc.bcm.edu	36	1	99544635	99544635	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014839	exon7	c.C1773T	p.S591S	.	.	.
POGZ	23126	hgsc.bcm.edu	36	1	149644497	149644498	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	CA	CA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145796	exon17	c.3352_3353del	p.1118_1118del	.	.	.
HRNR	388697	hgsc.bcm.edu	36	1	150460011	150460012	+	Frame_Shift_Del	DEL	GC	GC	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	GC	GC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001009931	exon3	c.717_718del	p.239_240del	.	.	.
FLG2	388698	hgsc.bcm.edu	36	1	150591182	150591183	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	TG	TG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001014342	exon3	c.5703_5704del	p.1901_1902del	.	.	.
ASH1L	55870	hgsc.bcm.edu	36	1	153574624	153574624	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018489	exon27	c.8683delA	p.T2895fs	.	.	.
RCC2	55920	hgsc.bcm.edu	36	1	17621875	17621876	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	CT	CT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001136204	exon4	c.567_568del	p.189_190del	.	.	.
ARID1A	8289	hgsc.bcm.edu	36	1	26972769	26972771	+	In_Frame_Del	DEL	GCA	GCA	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	GCA	GCA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006015	exon16	c.3978_3980del	p.1326_1327del	.	.	.
BXDC5	80135	hgsc.bcm.edu	36	1	84719263	84719264	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	AG	AG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025065	exon2	c.265_266del	p.89_89del	.	.	.
ANGPTL5	253935	hgsc.bcm.edu	36	11	101283772	101283772	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178127	exon2	c.T79G	p.C27G	.	.	.
KIAA1377	57562	hgsc.bcm.edu	36	11	101324003	101324003	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020802	exon4	c.G426T	p.E142D	.	.	.
KBTBD3	143879	hgsc.bcm.edu	36	11	105430115	105430115	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152433	exon3	c.G511A	p.D171N	.	.	.
EXPH5	23086	hgsc.bcm.edu	36	11	107885589	107885589	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015065	exon6	c.C5855T	p.P1952L	.	.	.
SIK2	23235	hgsc.bcm.edu	36	11	111081039	111081039	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015191	exon8	c.G1067A	p.R356Q	.	.	.
HTR3A	3359	hgsc.bcm.edu	36	11	113361960	113361960	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000869	exon6	c.C576T	p.N192N	.	.	.
C2CD2L	9854	hgsc.bcm.edu	36	11	118486850	118486850	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014807	exon4	c.G654A	p.T218T	.	.	.
TECTA	7007	hgsc.bcm.edu	36	11	120513732	120513732	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005422	exon10	c.G3334T	p.D1112Y	.	.	.
UBASH3B	84959	hgsc.bcm.edu	36	11	122155489	122155489	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032873	exon4	c.G477A	p.S159S	.	.	.
CRTAM	56253	hgsc.bcm.edu	36	11	122244012	122244012	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019604	exon9	c.G1046A	p.G349D	.	.	.
OR10S1	219873	hgsc.bcm.edu	36	11	123353456	123353456	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001004474	exon1	c.T153C	p.T51T	.	.	.
VWA5A	4013	hgsc.bcm.edu	36	11	123494171	123494171	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014622	exon4	c.C312T	p.S104S	.	.	.
PANX3	116337	hgsc.bcm.edu	36	11	123992398	123992398	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052959	exon3	c.C343T	p.L115L	.	.	.
ESAM	90952	hgsc.bcm.edu	36	11	124129413	124129413	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138961	exon6	c.T764A	p.V255E	.	.	.
SLC37A2	219855	hgsc.bcm.edu	36	11	124457000	124457000	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145290	exon9	c.G873T	p.A291A	.	.	.
TOLLIP	54472	hgsc.bcm.edu	36	11	1263829	1263829	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019009	exon5	c.G589A	p.V197I	.	.	.
RICS	9743	hgsc.bcm.edu	36	11	128373524	128373524	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014715	exon2	c.G6A	p.K2K	.	.	.
BARX2	8538	hgsc.bcm.edu	36	11	128826391	128826391	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003658	exon4	c.G724A	p.E242K	.	.	.
PRDM10	56980	hgsc.bcm.edu	36	11	129287195	129287195	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020228	exon19	c.G2989A	p.A997T	.	.	.
NTM	50863	hgsc.bcm.edu	36	11	131521480	131521480	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001144058	exon2	c.G262A	p.V88M	.	.	.
PDE3B	5140	hgsc.bcm.edu	36	11	14764693	14764693	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000922	exon3	c.T1164C	p.G388G	.	.	.
E2F8	79733	hgsc.bcm.edu	36	11	19213086	19213086	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024680	exon5	c.C547T	p.R183X	.	.	.
SLC6A5	9152	hgsc.bcm.edu	36	11	20615410	20615410	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004211	exon12	c.T1854A	p.F618L	.	.	.
NELL1	4745	hgsc.bcm.edu	36	11	20656104	20656104	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006157	exon2	c.C106A	p.L36I	.	.	.
NELL1	4745	hgsc.bcm.edu	36	11	21512549	21512549	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006157	exon16	c.G1699A	p.V567I	.	.	.
PAX6	5080	hgsc.bcm.edu	36	11	31779828	31779828	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127612	exon6	c.G214A	p.G72S	.	.	.
TRIM44	54765	hgsc.bcm.edu	36	11	35713553	35713553	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017583	exon4	c.G991A	p.D331N	.	.	.
STIM1	6786	hgsc.bcm.edu	36	11	4064329	4064329	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003156	exon11	c.G1521T	p.Q507H	.	.	.
ACCS	84680	hgsc.bcm.edu	36	11	44061596	44061596	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032592	exon14	c.G1301A	p.R434H	.	.	.
SYT13	57586	hgsc.bcm.edu	36	11	45232404	45232404	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020826	exon3	c.C537T	p.R179R	.	.	.
F2	2147	hgsc.bcm.edu	36	11	46701387	46701387	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000506	exon5	c.G398T	p.R133M	.	.	.
LRP4	4038	hgsc.bcm.edu	36	11	46853059	46853059	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002334	exon28	c.G4097A	p.R1366H	.	.	.
LRP4	4038	hgsc.bcm.edu	36	11	46853607	46853607	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002334	exon27	c.G3901T	p.A1301S	.	.	.
LRP4	4038	hgsc.bcm.edu	36	11	46857267	46857267	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002334	exon21	c.G2990A	p.R997H	.	.	.
ACP2	53	hgsc.bcm.edu	36	11	47223669	47223669	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001610	exon5	c.C481T	p.R161C	.	.	.
NR1H3	10062	hgsc.bcm.edu	36	11	47239684	47239684	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130102	exon5	c.T584C	p.M195T	.	.	.
NUP160	23279	hgsc.bcm.edu	36	11	47797548	47797548	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015231	exon10	c.C1316A	p.P439H	.	.	.
SLC43A1	8501	hgsc.bcm.edu	36	11	57015389	57015389	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003627	exon11	c.C1077T	p.F359F	.	.	.
OR10Q1	219960	hgsc.bcm.edu	36	11	57752137	57752137	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001004471	exon1	c.G787A	p.V263M	.	.	.
OR5B12	390191	hgsc.bcm.edu	36	11	57963522	57963522	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001004733	exon1	c.C679T	p.R227C	.	.	.
CNTF	1270	hgsc.bcm.edu	36	11	58148448	58148448	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000614	exon2	c.G480A	p.K160K	.	.	.
MS4A6A	64231	hgsc.bcm.edu	36	11	59705651	59705651	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152851	exon2	c.C126T	p.H42H	.	.	.
MS4A14	84689	hgsc.bcm.edu	36	11	59927031	59927031	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032597	exon4	c.T389C	p.L130P	.	.	.
ZP1	22917	hgsc.bcm.edu	36	11	60391720	60391720	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207341	exon1	c.T110C	p.L37P	.	.	.
FAM160A2	84067	hgsc.bcm.edu	36	11	6201989	6201989	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032127	exon3	c.T204C	p.A68A	.	.	.
APBB1	322	hgsc.bcm.edu	36	11	6379227	6379227	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001164	exon10	c.C1512G	p.A504A	.	.	.
SLC22A11	55867	hgsc.bcm.edu	36	11	64093837	64093837	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018484	exon9	c.T1520C	p.V507A	.	.	.
ZFPL1	7542	hgsc.bcm.edu	36	11	64608835	64608835	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006782	exon2	c.C89A	p.A30D	.	.	.
SPDYC	387778	hgsc.bcm.edu	36	11	64696754	64696754	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001008778	exon6	c.C540A	p.H180Q	.	.	.
MAP3K11	4296	hgsc.bcm.edu	36	11	65122553	65122553	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002419	exon10	c.G2329T	p.D777Y	.	.	.
MUS81	80198	hgsc.bcm.edu	36	11	65388585	65388585	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025128	exon11	c.G1101T	p.L367L	.	.	.
PELI3	246330	hgsc.bcm.edu	36	11	65995410	65995410	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145065	exon4	c.G346A	p.V116I	.	.	.
DPP3	10072	hgsc.bcm.edu	36	11	66012024	66012024	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005700	exon6	c.G637A	p.E213K	.	.	.
ZDHHC24	254359	hgsc.bcm.edu	36	11	66067810	66067810	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207340	exon2	c.C500T	p.A167V	.	.	.
CCDC87	55231	hgsc.bcm.edu	36	11	66115260	66115260	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018219	exon1	c.C1803A	p.L601L	.	.	.
CCS	9973	hgsc.bcm.edu	36	11	66129782	66129782	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005125	exon8	c.C705T	p.G235G	.	.	.
SPTBN2	6712	hgsc.bcm.edu	36	11	66213977	66213977	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006946	exon28	c.G5824A	p.A1942T	.	.	.
ALDH3B2	222	hgsc.bcm.edu	36	11	67187752	67187752	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000695	exon9	c.C930T	p.G310G	.	.	.
CPT1A	1374	hgsc.bcm.edu	36	11	68297347	68297347	+	Missense_Mutation	SNP	C	C	T	rs1046804	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001031847	exon14	c.G1702A	p.A568T	.	.	.
TPCN2	219931	hgsc.bcm.edu	36	11	68602971	68602971	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139075	exon16	c.G1446T	p.L482F	.	.	.
ARAP1	116985	hgsc.bcm.edu	36	11	72086709	72086709	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001040118	exon19	c.C2632T	p.R878W	.	.	.
ARHGEF17	9828	hgsc.bcm.edu	36	11	72749791	72749791	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014786	exon12	c.A4431C	p.K1477N	.	.	.
SERPINH1	871	hgsc.bcm.edu	36	11	74960535	74960535	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001235	exon5	c.G1016A	p.R339H	.	.	.
RSF1	51773	hgsc.bcm.edu	36	11	77056131	77056131	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016578	exon16	c.C3805T	p.R1269W	.	.	.
NLRP10	338322	hgsc.bcm.edu	36	11	7938229	7938229	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_176821	exon2	c.G1506T	p.K502N	.	.	.
CCDC81	60494	hgsc.bcm.edu	36	11	85801082	85801082	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021827	exon10	c.C954A	p.S318S	.	.	.
ST5	6764	hgsc.bcm.edu	36	11	8696009	8696009	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005418	exon8	c.T1484C	p.L495P	.	.	.
NAALAD2	10003	hgsc.bcm.edu	36	11	89541794	89541794	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005467	exon12	c.A1328G	p.D443G	.	.	.
ZNF143	7702	hgsc.bcm.edu	36	11	9494388	9494388	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003442	exon14	c.G1589T	p.G530V	.	.	.
SBF2	81846	hgsc.bcm.edu	36	11	9823847	9823847	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030962	exon24	c.T2951C	p.F984S	.	.	.
RIC8A	60626	hgsc.bcm.edu	36	11	204305	204306	+	Frame_Shift_Del	DEL	TA	TA	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	TA	TA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021932	exon10	c.1569_1570del	p.523_524del	.	.	.
OR5B21	219968	hgsc.bcm.edu	36	11	58031850	58031852	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	AAG	AAG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005218	exon1	c.303_305del	p.101_102del	.	.	.
SART1	9092	hgsc.bcm.edu	36	11	65501648	65501649	+	Frame_Shift_Del	DEL	AA	AA	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	AA	AA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005146	exon16	c.1984_1985del	p.662_662del	.	.	.
TPCN2	219931	hgsc.bcm.edu	36	11	68602966	68602968	+	In_Frame_Del	DEL	CTG	CTG	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	CTG	CTG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139075	exon16	c.1441_1443del	p.481_481del	.	.	.
USP45	85015	hgsc.bcm.edu	36	6	100043322	100043322	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001080481	exon6	c.A574T	p.I192F	.	.	.
PRDM1	639	hgsc.bcm.edu	36	6	106659804	106659804	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001198	exon5	c.C1076T	p.T359M	.	.	.
AIM1	202	hgsc.bcm.edu	36	6	107115463	107115463	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001624	exon17	c.G4724A	p.R1575H	.	.	.
PDSS2	57107	hgsc.bcm.edu	36	6	107638467	107638467	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020381	exon6	c.A877G	p.I293V	.	.	.
NCOA7	135112	hgsc.bcm.edu	36	6	126278186	126278186	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199620	exon13	c.A2111G	p.Y704C	.	.	.
LAMA2	3908	hgsc.bcm.edu	36	6	129663710	129663710	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001079823	exon22	c.G3174T	p.K1058N	.	.	.
LAMA2	3908	hgsc.bcm.edu	36	6	129764126	129764126	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001079823	exon38	c.A5510G	p.D1837G	.	.	.
ARHGAP18	93663	hgsc.bcm.edu	36	6	129963634	129963634	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033515	exon11	c.T1418G	p.M473R	.	.	.
SAMD3	154075	hgsc.bcm.edu	36	6	130538719	130538719	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001017373	exon8	c.C782T	p.A261V	.	.	.
TMEM200A	114801	hgsc.bcm.edu	36	6	130804098	130804098	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052913	exon2	c.A838T	p.I280F	.	.	.
TBC1D7	51256	hgsc.bcm.edu	36	6	13435050	13435050	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001143965	exon2	c.T60C	p.R20R	.	.	.
NMBR	4829	hgsc.bcm.edu	36	6	142451183	142451183	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002511	exon1	c.G306A	p.S102S	.	.	.
GRM1	2911	hgsc.bcm.edu	36	6	146392617	146392617	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114329	exon2	c.G271A	p.A91T	.	.	.
RAB32	10981	hgsc.bcm.edu	36	6	146906864	146906864	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006834	exon1	c.G164A	p.R55Q	.	.	.
RAET1G	353091	hgsc.bcm.edu	36	6	150282104	150282104	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001001788	exon3	c.A399T	p.G133G	.	.	.
AKAP12	9590	hgsc.bcm.edu	36	6	151714228	151714228	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005100	exon4	c.G3009A	p.V1003V	.	.	.
JARID2	3720	hgsc.bcm.edu	36	6	15518510	15518510	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004973	exon3	c.C258A	p.S86S	.	.	.
TIAM2	26230	hgsc.bcm.edu	36	6	155500241	155500241	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012454	exon4	c.C1433T	p.T478I	.	.	.
ARID1B	57492	hgsc.bcm.edu	36	6	157570287	157570287	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017519	exon19	c.G6281A	p.R2094H	.	.	.
ZDHHC14	79683	hgsc.bcm.edu	36	6	157986776	157986776	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153746	exon6	c.T772A	p.C258S	.	.	.
MAP3K4	4216	hgsc.bcm.edu	36	6	161390254	161390254	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006724	exon3	c.T960G	p.T320T	.	.	.
MAP3K4	4216	hgsc.bcm.edu	36	6	161390644	161390644	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006724	exon3	c.A1350G	p.E450E	.	.	.
THBS2	7058	hgsc.bcm.edu	36	6	169390683	169390683	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003247	exon4	c.G363A	p.A121A	.	.	.
KIAA0319	9856	hgsc.bcm.edu	36	6	24664844	24664844	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001168377	exon18	c.C2827T	p.R943C	.	.	.
TRIM38	10475	hgsc.bcm.edu	36	6	26074822	26074822	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006355	exon3	c.T93A	p.C31X	.	.	.
HIST1H1A	3024	hgsc.bcm.edu	36	6	26125918	26125918	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005325	exon1	c.G22C	p.A8P	.	.	.
HIST1H3B	8358	hgsc.bcm.edu	36	6	26139955	26139955	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003537	exon1	c.T313C	p.F105L	.	.	.
GTF2H4	2968	hgsc.bcm.edu	36	6	30989697	30989697	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001517	exon14	c.C1347T	p.S449S	.	.	.
POU5F1	5460	hgsc.bcm.edu	36	6	31246146	31246146	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002701	exon1	c.G231A	p.G77G	.	.	.
HLA-DRA	3122	hgsc.bcm.edu	36	6	32519520	32519520	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019111	exon4	c.C620T	p.A207V	.	.	.
RING1	6015	hgsc.bcm.edu	36	6	33285776	33285776	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002931	exon4	c.G346C	p.E116Q	.	.	.
GRM4	2914	hgsc.bcm.edu	36	6	34098589	34098589	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000841	exon10	c.A2726T	p.N909I	.	.	.
DNAH8	1769	hgsc.bcm.edu	36	6	39102300	39102300	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001371	exon90	c.G13064A	p.G4355D	.	.	.
MOCS1	4337	hgsc.bcm.edu	36	6	39987998	39987998	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001075098	exon8	c.T969C	p.D323D	.	.	.
NFYA	4800	hgsc.bcm.edu	36	6	41170175	41170175	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002505	exon9	c.A951T	p.R317R	.	.	.
PTK7	5754	hgsc.bcm.edu	36	6	43217676	43217676	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152880	exon11	c.C1678G	p.R560G	.	.	.
ABCC10	89845	hgsc.bcm.edu	36	6	43520858	43520858	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001198934	exon14	c.T2858C	p.L953P	.	.	.
MEP1A	4224	hgsc.bcm.edu	36	6	46901137	46901137	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005588	exon8	c.C726T	p.R242R	.	.	.
TFAP2D	83741	hgsc.bcm.edu	36	6	50790862	50790862	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_172238	exon2	c.C114T	p.V38V	.	.	.
LRRC1	55227	hgsc.bcm.edu	36	6	53768064	53768064	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018214	exon1	c.C51T	p.I17I	.	.	.
EYS	346007	hgsc.bcm.edu	36	6	66257209	66257209	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198283	exon4	c.A861G	p.S287S	.	.	.
FILIP1	27145	hgsc.bcm.edu	36	6	76120014	76120014	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015687	exon4	c.G590T	p.S197I	.	.	.
FAM46A	55603	hgsc.bcm.edu	36	6	82516541	82516541	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017633	exon3	c.G919A	p.A307T	.	.	.
PRSS35	167681	hgsc.bcm.edu	36	6	84290384	84290384	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001170423	exon3	c.C505A	p.H169N	.	.	.
MDN1	23195	hgsc.bcm.edu	36	6	90561135	90561135	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014611	exon3	c.C436T	p.R146W	.	.	.
FUT9	10690	hgsc.bcm.edu	36	6	96758354	96758354	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006581	exon3	c.C602T	p.A201V	.	.	.
KIAA0776	23376	hgsc.bcm.edu	36	6	97092011	97092011	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015323	exon9	c.A843G	p.V281V	.	.	.
KLHL32	114792	hgsc.bcm.edu	36	6	97530671	97530671	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052904	exon3	c.A101G	p.Q34R	.	.	.
C6orf167	253714	hgsc.bcm.edu	36	6	97727685	97727685	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198468	exon19	c.G2814A	p.G938G	.	.	.
C6orf168	84553	hgsc.bcm.edu	36	6	99835986	99835986	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032511	exon6	c.C1005T	p.H335H	.	.	.
MAP3K4	4216	hgsc.bcm.edu	36	6	161390650	161390651	+	Frame_Shift_Del	DEL	GG	GG	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	GG	GG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006724	exon3	c.1356_1357del	p.452_453del	.	.	.
MYH8	4626	hgsc.bcm.edu	36	17	10237165	10237165	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002472	exon36	c.C5254T	p.R1752C	.	.	.
MYH1	4619	hgsc.bcm.edu	36	17	10339136	10339136	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005963	exon37	c.T5303C	p.M1768T	.	.	.
TMEM220	388335	hgsc.bcm.edu	36	17	10569074	10569074	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001004313	exon4	c.T266A	p.I89N	.	.	.
RILP	83547	hgsc.bcm.edu	36	17	1497917	1497917	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031430	exon6	c.G906A	p.K302K	.	.	.
ZNF624	57547	hgsc.bcm.edu	36	17	16466601	16466601	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020787	exon6	c.C2324T	p.T775I	.	.	.
PEMT	10400	hgsc.bcm.edu	36	17	17366431	17366431	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_148172	exon3	c.G208A	p.A70T	.	.	.
SMG6	23293	hgsc.bcm.edu	36	17	2148958	2148958	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001170957	exon2	c.G1746A	p.A582A	.	.	.
SRR	63826	hgsc.bcm.edu	36	17	2173739	2173739	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021947	exon8	c.T845C	p.I282T	.	.	.
TNFAIP1	7126	hgsc.bcm.edu	36	17	23692448	23692448	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021137	exon4	c.A434G	p.E145G	.	.	.
PHF12	57649	hgsc.bcm.edu	36	17	24275154	24275154	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001033561	exon4	c.A614G	p.Q205R	.	.	.
TAOK1	57551	hgsc.bcm.edu	36	17	24885341	24885341	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020791	exon19	c.C2441T	p.A814V	.	.	.
NF1	4763	hgsc.bcm.edu	36	17	26694269	26694269	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000267	exon47	c.C7116T	p.H2372H	.	.	.
OR1D2	4991	hgsc.bcm.edu	36	17	2942579	2942579	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002548	exon1	c.C462A	p.L154L	.	.	.
LIG3	3980	hgsc.bcm.edu	36	17	30340716	30340716	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013975	exon4	c.C810T	p.C270C	.	.	.
C17orf66	256957	hgsc.bcm.edu	36	17	31214160	31214160	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152781	exon8	c.G708A	p.T236T	.	.	.
AP1GBP1	11276	hgsc.bcm.edu	36	17	33005095	33005095	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007247	exon10	c.G1101C	p.R367S	.	.	.
TRPV3	162514	hgsc.bcm.edu	36	17	3395234	3395234	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145068	exon3	c.C201A	p.P67P	.	.	.
WIPF2	147179	hgsc.bcm.edu	36	17	35674722	35674722	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133264	exon5	c.C768T	p.R256R	.	.	.
KRT26	353288	hgsc.bcm.edu	36	17	36179617	36179617	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181539	exon5	c.C884T	p.A295V	.	.	.
KRT28	162605	hgsc.bcm.edu	36	17	36208121	36208121	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181535	exon3	c.C582T	p.N194N	.	.	.
ATP6V0A1	535	hgsc.bcm.edu	36	17	37866475	37866475	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130021	exon2	c.G37A	p.A13T	.	.	.
DHX8	1659	hgsc.bcm.edu	36	17	38924109	38924109	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004941	exon4	c.C358T	p.P120S	.	.	.
ZZEF1	23140	hgsc.bcm.edu	36	17	3900904	3900904	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015113	exon36	c.C5783T	p.T1928M	.	.	.
DUSP3	1845	hgsc.bcm.edu	36	17	39207683	39207683	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004090	exon2	c.A275G	p.D92G	.	.	.
FMNL1	752	hgsc.bcm.edu	36	17	40669358	40669358	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005892	exon7	c.C687T	p.V229V	.	.	.
ARHGAP27	201176	hgsc.bcm.edu	36	17	40838175	40838175	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_199282	exon3	c.T123C	p.G41G	.	.	.
CALCOCO2	10241	hgsc.bcm.edu	36	17	44280706	44280706	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005831	exon4	c.G307A	p.E103K	.	.	.
COL1A1	1277	hgsc.bcm.edu	36	17	45629559	45629559	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000088	exon10	c.G731A	p.R244H	.	.	.
MRPL27	51264	hgsc.bcm.edu	36	17	45800497	45800497	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016504	exon4	c.T402C	p.V134V	.	.	.
CHAD	1101	hgsc.bcm.edu	36	17	45900975	45900975	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001267	exon1	c.G199A	p.A67T	.	.	.
PSMB6	5694	hgsc.bcm.edu	36	17	4648614	4648614	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002798	exon6	c.G659A	p.R220Q	.	.	.
KIF2B	84643	hgsc.bcm.edu	36	17	49257130	49257130	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032559	exon1	c.T1737G	p.D579E	.	.	.
MSI2	124540	hgsc.bcm.edu	36	17	53048351	53048351	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_170721	exon8	c.C547T	p.P183S	.	.	.
SFRS1	6426	hgsc.bcm.edu	36	17	53438245	53438245	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001078166	exon3	c.C468T	p.G156G	.	.	.
EPX	8288	hgsc.bcm.edu	36	17	53626341	53626341	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000502	exon5	c.G483A	p.G161G	.	.	.
MTMR4	9110	hgsc.bcm.edu	36	17	53944797	53944797	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004687	exon4	c.A163G	p.I55V	.	.	.
RAD51C	5889	hgsc.bcm.edu	36	17	54164848	54164848	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_058216	exon8	c.G970A	p.A324T	.	.	.
DHX40	79665	hgsc.bcm.edu	36	17	55037680	55037680	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024612	exon17	c.G2063A	p.R688H	.	.	.
SMURF2	64750	hgsc.bcm.edu	36	17	59989460	59989460	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022739	exon11	c.A1103G	p.Y368C	.	.	.
BPTF	2186	hgsc.bcm.edu	36	17	63372015	63372015	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182641	exon21	c.G6729A	p.L2243L	.	.	.
XAF1	54739	hgsc.bcm.edu	36	17	6602149	6602149	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_199139	exon2	c.C50A	p.S17Y	.	.	.
SLC16A13	201232	hgsc.bcm.edu	36	17	6882566	6882566	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_201566	exon3	c.G715A	p.A239T	.	.	.
NAT9	26151	hgsc.bcm.edu	36	17	70280723	70280723	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015654	exon4	c.G241A	p.A81T	.	.	.
TSEN54	283989	hgsc.bcm.edu	36	17	71029186	71029186	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207346	exon7	c.G623A	p.R208Q	.	.	.
EXOC7	23265	hgsc.bcm.edu	36	17	71596976	71596976	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145299	exon9	c.G991A	p.V331M	.	.	.
RHBDF2	79651	hgsc.bcm.edu	36	17	71982774	71982774	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024599	exon10	c.C1247T	p.T416M	.	.	.
USP36	57602	hgsc.bcm.edu	36	17	74342992	74342992	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025090	exon4	c.C440T	p.A147V	.	.	.
DNAH2	146754	hgsc.bcm.edu	36	17	7640578	7640578	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020877	exon49	c.G7746A	p.K2582K	.	.	.
DNAH2	146754	hgsc.bcm.edu	36	17	7643227	7643227	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020877	exon55	c.C8641T	p.R2881C	.	.	.
RPTOR	57521	hgsc.bcm.edu	36	17	76528970	76528970	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020761	exon25	c.G2999T	p.R1000M	.	.	.
DYSFIP1	116729	hgsc.bcm.edu	36	17	77385720	77385720	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001007533	exon2	c.G289A	p.G97S	.	.	.
CHD3	1107	hgsc.bcm.edu	36	17	7751396	7751396	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005852	exon32	c.G4789A	p.A1597T	.	.	.
NTN1	9423	hgsc.bcm.edu	36	17	9006978	9006978	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004822	exon3	c.A1142G	p.H381R	.	.	.
GAS7	8522	hgsc.bcm.edu	36	17	9770696	9770696	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003644	exon6	c.C581A	p.A194D	.	.	.
GAS7	8522	hgsc.bcm.edu	36	17	9803262	9803262	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003644	exon1	c.C87T	p.S29S	.	.	.
BRIP1	83990	hgsc.bcm.edu	36	17	57293681	57293682	+	Frame_Shift_Del	DEL	AT	AT	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	AT	AT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032043	wholegene	.	.	.	.	.
GPS2	2874	hgsc.bcm.edu	36	17	7158429	7158431	+	In_Frame_Del	DEL	CTC	CTC	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	CTC	CTC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004489	exon4	c.220_222del	p.74_74del	.	.	.
CLDN17	26285	hgsc.bcm.edu	36	21	30460169	30460169	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012131	exon1	c.C638T	p.T213M	.	.	.
BRWD1	54014	hgsc.bcm.edu	36	21	39530577	39530577	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033656	exon23	c.C2580A	p.D860E	.	.	.
LCA5L	150082	hgsc.bcm.edu	36	21	39703828	39703828	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152505	exon9	c.C1229T	p.P410L	.	.	.
RRP1B	23076	hgsc.bcm.edu	36	21	43931133	43931133	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015056	exon12	c.A1030G	p.S344G	.	.	.
PWP2	5822	hgsc.bcm.edu	36	21	44366516	44366516	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005049	exon14	c.C1667T	p.A556V	.	.	.
TRPM2	7226	hgsc.bcm.edu	36	21	44611110	44611110	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003307	exon4	c.C469A	p.L157I	.	.	.
TRPM2	7226	hgsc.bcm.edu	36	21	44679466	44679466	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003307	exon28	c.G3999A	p.L1333L	.	.	.
PCNT	5116	hgsc.bcm.edu	36	21	46570847	46570847	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006031	exon2	c.C183T	p.S61S	.	.	.
MYH11	4629	hgsc.bcm.edu	36	16	15759186	15759186	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001040114	exon14	c.C1595T	p.P532L	.	.	.
TSC2	7249	hgsc.bcm.edu	36	16	2044429	2044429	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114382	exon5	c.G468A	p.L156L	.	.	.
ZP2	7783	hgsc.bcm.edu	36	16	21125705	21125705	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003460	exon5	c.C438A	p.T146T	.	.	.
SULT1A2	6799	hgsc.bcm.edu	36	16	28511222	28511222	+	Missense_Mutation	SNP	C	C	T	rs45583638	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001054	exon7	c.G638A	p.R213H	.	.	.
DCTPP1	79077	hgsc.bcm.edu	36	16	30348762	30348762	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024096	exon1	c.G41A	p.G14E	.	.	.
ADCY9	115	hgsc.bcm.edu	36	16	3983429	3983429	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001116	exon4	c.C1968T	p.D656D	.	.	.
C16orf71	146562	hgsc.bcm.edu	36	16	4730155	4730155	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139170	exon4	c.C277T	p.P93S	.	.	.
SEPT12	124404	hgsc.bcm.edu	36	16	4769785	4769785	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144605	exon8	c.C730A	p.R244R	.	.	.
SALL1	6299	hgsc.bcm.edu	36	16	49732320	49732320	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002968	exon2	c.G1314A	p.A438A	.	.	.
GNAO1	2775	hgsc.bcm.edu	36	16	54928157	54928157	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138736	exon6	c.G607A	p.G203R	.	.	.
SLC12A3	6559	hgsc.bcm.edu	36	16	55483517	55483517	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000339	exon20	c.C2390T	p.A797V	.	.	.
CCDC113	29070	hgsc.bcm.edu	36	16	56845430	56845430	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014157	exon3	c.C256T	p.R86W	.	.	.
PDP2	57546	hgsc.bcm.edu	36	16	65475955	65475955	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020786	exon2	c.C267T	p.G89G	.	.	.
NUTF2	10204	hgsc.bcm.edu	36	16	66459911	66459911	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005796	exon4	c.C178T	p.P60S	.	.	.
LCAT	3931	hgsc.bcm.edu	36	16	66534470	66534470	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000229	exon2	c.G301A	p.D101N	.	.	.
DPEP3	64180	hgsc.bcm.edu	36	16	66569174	66569174	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001129758	exon6	c.C891T	p.D297D	.	.	.
SLC7A6	9057	hgsc.bcm.edu	36	16	66888105	66888105	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003983	exon10	c.C1344A	p.T448T	.	.	.
CDH3	1001	hgsc.bcm.edu	36	16	67289682	67289682	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001793	exon16	c.G2368A	p.A790T	.	.	.
C16orf46	123775	hgsc.bcm.edu	36	16	79652621	79652621	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152337	exon4	c.G834A	p.T278T	.	.	.
LRRC50	123872	hgsc.bcm.edu	36	16	82765798	82765798	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178452	exon10	c.A1667G	p.D556G	.	.	.
ZNF276	92822	hgsc.bcm.edu	36	16	88331916	88331916	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001113525	exon11	c.C1606A	p.R536R	.	.	.
FANCA	2175	hgsc.bcm.edu	36	16	88352606	88352606	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000135	exon30	c.T2861G	p.F954C	.	.	.
COG4	25839	hgsc.bcm.edu	36	16	69074141	69074143	+	In_Frame_Del	DEL	TGT	TGT	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	TGT	TGT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015386	exon15	c.1910_1912del	p.637_638del	.	.	.
MPPE1	65258	hgsc.bcm.edu	36	18	11879437	11879437	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_023075	exon5	c.A443C	p.H148P	.	.	.
C18orf19	125228	hgsc.bcm.edu	36	18	13671626	13671626	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152352	exon2	c.A451C	p.T151P	.	.	.
LAMA3	3909	hgsc.bcm.edu	36	18	19741583	19741583	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127718	exon15	c.A1795G	p.T599A	.	.	.
KCTD1	284252	hgsc.bcm.edu	36	18	22289848	22289848	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198991	exon6	c.C631T	p.Q211X	.	.	.
DSG4	147409	hgsc.bcm.edu	36	18	27224650	27224650	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001134453	exon6	c.C551T	p.A184V	.	.	.
B4GALT6	9331	hgsc.bcm.edu	36	18	27464956	27464956	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004775	exon6	c.G740A	p.R247H	.	.	.
RPRD1A	55197	hgsc.bcm.edu	36	18	31827119	31827119	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018170	exon7	c.A932G	p.E311G	.	.	.
PIK3C3	5289	hgsc.bcm.edu	36	18	37891986	37891986	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002647	exon22	c.G2405A	p.C802Y	.	.	.
KATNAL2	83473	hgsc.bcm.edu	36	18	42847481	42847481	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031303	exon8	c.C602A	p.P201H	.	.	.
ST8SIA3	51046	hgsc.bcm.edu	36	18	53171132	53171132	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015879	exon1	c.C57G	p.S19R	.	.	.
NARS	4677	hgsc.bcm.edu	36	18	53421100	53421100	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004539	exon12	c.T1325C	p.V442A	.	.	.
EPB41L3	23136	hgsc.bcm.edu	36	18	5387348	5387348	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012307	exon18	c.G2550T	p.K850N	.	.	.
ARHGAP28	79822	hgsc.bcm.edu	36	18	6877212	6877212	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001010000	exon11	c.C1033T	p.P345S	.	.	.
LAMA1	284217	hgsc.bcm.edu	36	18	6951751	6951751	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005559	exon53	c.G7460A	p.R2487Q	.	.	.
TSHZ1	10194	hgsc.bcm.edu	36	18	71128672	71128672	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005786	exon2	c.G2187A	p.L729L	.	.	.
FANCD2	2177	hgsc.bcm.edu	36	3	10078846	10078846	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033084	exon20	c.C1778T	p.P593L	.	.	.
TATDN2	9797	hgsc.bcm.edu	36	3	10277106	10277106	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014760	exon3	c.G700A	p.A234T	.	.	.
TATDN2	9797	hgsc.bcm.edu	36	3	10287242	10287242	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014760	exon4	c.T1376C	p.V459A	.	.	.
ATP2B2	491	hgsc.bcm.edu	36	3	10375558	10375558	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001683	exon11	c.C1818T	p.R606R	.	.	.
SLC6A11	6538	hgsc.bcm.edu	36	3	10891711	10891711	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014229	exon6	c.G822A	p.T274T	.	.	.
DZIP3	9666	hgsc.bcm.edu	36	3	109845866	109845866	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014648	exon14	c.A1307G	p.Y436C	.	.	.
MORC1	27136	hgsc.bcm.edu	36	3	110206411	110206411	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014429	exon20	c.T2028C	p.A676A	.	.	.
DPPA2	151871	hgsc.bcm.edu	36	3	110506206	110506206	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138815	exon7	c.C660T	p.G220G	.	.	.
BTLA	151888	hgsc.bcm.edu	36	3	113671315	113671315	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181780	exon4	c.G574A	p.A192T	.	.	.
BOC	91653	hgsc.bcm.edu	36	3	114452268	114452268	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033254	exon4	c.G274A	p.V92I	.	.	.
TIGIT	201633	hgsc.bcm.edu	36	3	115497372	115497372	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173799	exon2	c.T352C	p.Y118H	.	.	.
GAP43	2596	hgsc.bcm.edu	36	3	116825239	116825239	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002045	exon1	c.A13G	p.M5V	.	.	.
B4GALT4	8702	hgsc.bcm.edu	36	3	120420210	120420210	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003778	exon6	c.C774T	p.G258G	.	.	.
C3orf1	51300	hgsc.bcm.edu	36	3	120705084	120705084	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016589	exon3	c.G376A	p.A126T	.	.	.
GPR156	165829	hgsc.bcm.edu	36	3	121369137	121369137	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001168271	exon9	c.G1865A	p.R622K	.	.	.
HCLS1	3059	hgsc.bcm.edu	36	3	122837289	122837289	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005335	exon9	c.C674T	p.T225M	.	.	.
GOLGB1	2804	hgsc.bcm.edu	36	3	122897070	122897070	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004487	exon13	c.G4975A	p.E1659K	.	.	.
CSTA	1475	hgsc.bcm.edu	36	3	123543001	123543001	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005213	exon3	c.T194C	p.M65T	.	.	.
PPARG	5468	hgsc.bcm.edu	36	3	12433286	12433286	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015869	exon6	c.G903A	p.Q301Q	.	.	.
MYLK	4638	hgsc.bcm.edu	36	3	124934520	124934520	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_053025	exon11	c.G1429A	p.A477T	.	.	.
TSEN2	80746	hgsc.bcm.edu	36	3	12535594	12535594	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025265	exon8	c.A997G	p.T333A	.	.	.
KALRN	8997	hgsc.bcm.edu	36	3	125470553	125470553	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003947	exon5	c.G724A	p.V242M	.	.	.
ASTE1	28990	hgsc.bcm.edu	36	3	132225916	132225916	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014065	exon3	c.T925A	p.F309I	.	.	.
NUP210	23225	hgsc.bcm.edu	36	3	13358275	13358275	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024923	exon23	c.A3201G	p.R1067R	.	.	.
NUP210	23225	hgsc.bcm.edu	36	3	13358295	13358295	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024923	exon23	c.A3181G	p.T1061A	.	.	.
FAIM	55179	hgsc.bcm.edu	36	3	139822982	139822982	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018147	exon2	c.T22C	p.W8R	.	.	.
RBP1	5947	hgsc.bcm.edu	36	3	140740441	140740441	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130993	exon2	c.G310A	p.E104K	.	.	.
CLSTN2	64084	hgsc.bcm.edu	36	3	141748128	141748128	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022131	exon10	c.A1589G	p.E530G	.	.	.
PLS1	5357	hgsc.bcm.edu	36	3	143891326	143891326	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002670	exon10	c.C1158T	p.I386I	.	.	.
PCOLCE2	26577	hgsc.bcm.edu	36	3	144022484	144022484	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013363	exon8	c.C1043T	p.A348V	.	.	.
SLC6A6	6533	hgsc.bcm.edu	36	3	14498280	14498280	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003043	exon14	c.C1649T	p.A550V	.	.	.
ZIC4	84107	hgsc.bcm.edu	36	3	148596564	148596564	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001168378	exon3	c.G603A	p.M201I	.	.	.
MED12L	116931	hgsc.bcm.edu	36	3	152360347	152360347	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_053002	exon7	c.T876A	p.R292R	.	.	.
MBNL1	4154	hgsc.bcm.edu	36	3	153645844	153645844	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207293	exon4	c.T633C	p.I211I	.	.	.
DHX36	170506	hgsc.bcm.edu	36	3	155476655	155476655	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114397	exon25	c.G2984A	p.X995X	.	.	.
MME	4311	hgsc.bcm.edu	36	3	156284655	156284655	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000902	exon2	c.G5A	p.G2D	.	.	.
PLCH1	23007	hgsc.bcm.edu	36	3	156683262	156683262	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130960	exon23	c.G3271A	p.A1091T	.	.	.
PLCH1	23007	hgsc.bcm.edu	36	3	156697841	156697841	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130960	exon14	c.A1820G	p.Y607C	.	.	.
MLF1	4291	hgsc.bcm.edu	36	3	159803406	159803406	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001195434	exon8	c.C655T	p.R219X	.	.	.
PLD1	5337	hgsc.bcm.edu	36	3	172938496	172938496	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130081	exon2	c.C40T	p.L14L	.	.	.
EIF2B5	8893	hgsc.bcm.edu	36	3	185341105	185341105	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003907	exon7	c.T1049C	p.L350P	.	.	.
ABCF3	55324	hgsc.bcm.edu	36	3	185388834	185388834	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018358	exon7	c.C781T	p.R261X	.	.	.
EIF4G1	1981	hgsc.bcm.edu	36	3	185535232	185535232	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182917	exon32	c.G4645A	p.A1549T	.	.	.
TMEM41A	90407	hgsc.bcm.edu	36	3	186697444	186697444	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080652	exon2	c.G139A	p.D47N	.	.	.
MASP1	5648	hgsc.bcm.edu	36	3	188436471	188436471	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139125	exon11	c.G1882A	p.A628T	.	.	.
BCL6	604	hgsc.bcm.edu	36	3	188927301	188927301	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130845	exon7	c.C1620A	p.T540T	.	.	.
DLG1	1739	hgsc.bcm.edu	36	3	198292331	198292331	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004087	exon18	c.G1992A	p.T664T	.	.	.
FYTTD1	84248	hgsc.bcm.edu	36	3	198988217	198988217	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001011537	exon8	c.G601T	p.G201X	.	.	.
RARB	5915	hgsc.bcm.edu	36	3	25611101	25611101	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000965	exon7	c.C1078T	p.R360X	.	.	.
CNTN4	152330	hgsc.bcm.edu	36	3	3053964	3053964	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_175613	exon9	c.A1060T	p.I354F	.	.	.
STT3B	201595	hgsc.bcm.edu	36	3	31649622	31649622	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178862	exon15	c.A2379C	p.K793N	.	.	.
OSBPL10	114884	hgsc.bcm.edu	36	3	31846617	31846617	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017784	exon4	c.C648T	p.V216V	.	.	.
UBP1	7342	hgsc.bcm.edu	36	3	33428147	33428147	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001128161	exon6	c.C485T	p.T162M	.	.	.
STAC	6769	hgsc.bcm.edu	36	3	36460052	36460052	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003149	exon2	c.C304A	p.H102N	.	.	.
CHL1	10752	hgsc.bcm.edu	36	3	378486	378486	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006614	exon13	c.G1411A	p.V471M	.	.	.
ACAA1	30	hgsc.bcm.edu	36	3	38142756	38142756	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001607	exon9	c.A898G	p.I300V	.	.	.
ZNF620	253639	hgsc.bcm.edu	36	3	40533186	40533186	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_175888	exon5	c.G1097A	p.C366Y	.	.	.
VIPR1	7433	hgsc.bcm.edu	36	3	42547291	42547291	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004624	exon7	c.C653T	p.A218V	.	.	.
CDCP1	64866	hgsc.bcm.edu	36	3	45127145	45127145	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022842	exon4	c.A848G	p.Y283C	.	.	.
SLC6A20	54716	hgsc.bcm.edu	36	3	45776448	45776448	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022405	exon9	c.G1423T	p.V475L	.	.	.
CCR1	1230	hgsc.bcm.edu	36	3	46220312	46220312	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001295	exon2	c.T497C	p.M166T	.	.	.
LTF	4057	hgsc.bcm.edu	36	3	46481354	46481354	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002343	exon1	c.T8C	p.L3P	.	.	.
CSPG5	10675	hgsc.bcm.edu	36	3	47593368	47593368	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006574	exon2	c.C1152T	p.G384G	.	.	.
DHX30	22907	hgsc.bcm.edu	36	3	47866156	47866156	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138615	exon21	c.C3224T	p.T1075M	.	.	.
CDC25A	993	hgsc.bcm.edu	36	3	48175945	48175945	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001789	exon14	c.C1327T	p.R443W	.	.	.
GRM2	2912	hgsc.bcm.edu	36	3	51724963	51724963	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130063	exon2	c.G280A	p.E94K	.	.	.
IQCF1	132141	hgsc.bcm.edu	36	3	51904150	51904150	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152397	exon4	c.G414A	p.W138X	.	.	.
WDR51A	25886	hgsc.bcm.edu	36	3	52154967	52154967	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001161581	exon6	c.C500T	p.A167V	.	.	.
PHF7	51533	hgsc.bcm.edu	36	3	52432284	52432284	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016483	exon11	c.G1057C	p.E353Q	.	.	.
NEK4	6787	hgsc.bcm.edu	36	3	52752451	52752451	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001193533	exon11	c.C1694A	p.P565H	.	.	.
SFMBT1	51460	hgsc.bcm.edu	36	3	52929695	52929695	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005158	exon13	c.C1270T	p.P424S	.	.	.
CHDH	55349	hgsc.bcm.edu	36	3	53831695	53831695	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018397	exon4	c.G718A	p.A240T	.	.	.
FLNB	2317	hgsc.bcm.edu	36	3	58124064	58124064	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001164317	exon44	c.G7258A	p.A2420T	.	.	.
ACOX2	8309	hgsc.bcm.edu	36	3	58485335	58485335	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003500	exon11	c.C1384A	p.P462T	.	.	.
C3orf67	200844	hgsc.bcm.edu	36	3	58874581	58874581	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198463	exon6	c.A68G	p.K23R	.	.	.
ATXN7	6314	hgsc.bcm.edu	36	3	63956626	63956626	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001177387	exon11	c.T2088C	p.S696S	.	.	.
ASTE1	28990	hgsc.bcm.edu	36	3	132225912	132225913	+	Frame_Shift_Del	DEL	AA	AA	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	AA	AA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014065	exon3	c.928_929del	p.310_310del	.	.	.
SLC5A8	160728	hgsc.bcm.edu	36	12	100127458	100127458	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145913	exon1	c.G300A	p.A100A	.	.	.
NT5DC3	51559	hgsc.bcm.edu	36	12	102716543	102716543	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001031701	exon5	c.C567T	p.Y189Y	.	.	.
CKAP4	10970	hgsc.bcm.edu	36	12	105157030	105157030	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006825	exon2	c.G1711A	p.E571K	.	.	.
TCP11L2	255394	hgsc.bcm.edu	36	12	105232374	105232374	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152772	exon3	c.T266C	p.L89S	.	.	.
RIC8B	55188	hgsc.bcm.edu	36	12	105733040	105733040	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018157	exon3	c.C569T	p.P190L	.	.	.
BTBD11	121551	hgsc.bcm.edu	36	12	106528136	106528136	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001017523	exon3	c.G294T	p.A98A	.	.	.
CSDA	8531	hgsc.bcm.edu	36	12	10745897	10745897	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145426	exon7	c.G775T	p.G259X	.	.	.
TMEM119	338773	hgsc.bcm.edu	36	12	107510015	107510015	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181724	exon2	c.C274T	p.R92C	.	.	.
ACACB	32	hgsc.bcm.edu	36	12	108090146	108090146	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001093	exon3	c.C849A	p.A283A	.	.	.
ACACB	32	hgsc.bcm.edu	36	12	108131452	108131452	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001093	exon20	c.C3160A	p.P1054T	.	.	.
PPTC7	160760	hgsc.bcm.edu	36	12	109473981	109473981	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139283	exon2	c.G399A	p.L133L	.	.	.
ALDH2	217	hgsc.bcm.edu	36	12	110712660	110712660	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000690	exon6	c.C592T	p.P198S	.	.	.
RBM19	9904	hgsc.bcm.edu	36	12	112880110	112880110	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016196	exon6	c.G700A	p.V234M	.	.	.
TBX3	6926	hgsc.bcm.edu	36	12	113596827	113596827	+	Silent	SNP	C	C	T	rs62640916	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005996	exon6	c.G1236A	p.S412S	.	.	.
HNF1A	6927	hgsc.bcm.edu	36	12	119916497	119916497	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000545	exon4	c.C861T	p.S287S	.	.	.
HPD	3242	hgsc.bcm.edu	36	12	120772003	120772003	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002150	exon8	c.C491T	p.A164V	.	.	.
CLIP1	6249	hgsc.bcm.edu	36	12	121383640	121383640	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198240	exon13	c.T2576C	p.M859T	.	.	.
LRP6	4040	hgsc.bcm.edu	36	12	12288621	12288621	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002336	exon2	c.C291T	p.P97P	.	.	.
SLC15A4	121260	hgsc.bcm.edu	36	12	127865435	127865435	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145648	exon2	c.C680T	p.A227V	.	.	.
RIMBP2	23504	hgsc.bcm.edu	36	12	129529460	129529460	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015347	exon3	c.G52A	p.A18T	.	.	.
EP400	57634	hgsc.bcm.edu	36	12	131032700	131032700	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015409	exon5	c.C1650A	p.H550Q	.	.	.
POLE	5426	hgsc.bcm.edu	36	12	131719138	131719138	+	Missense_Mutation	SNP	C	C	T	rs58916399	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006231	exon45	c.G6166A	p.A2056T	.	.	.
GUCY2C	2984	hgsc.bcm.edu	36	12	14727384	14727384	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004963	exon4	c.T470C	p.L157S	.	.	.
WBP11	51729	hgsc.bcm.edu	36	12	14838826	14838826	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016312	exon7	c.C633T	p.V211V	.	.	.
DCP1B	196513	hgsc.bcm.edu	36	12	1931926	1931926	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152640	exon7	c.G1441T	p.A481S	.	.	.
SLCO1B3	28234	hgsc.bcm.edu	36	12	20945657	20945657	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019844	exon14	c.C1854T	p.S618S	.	.	.
KLHDC5	57542	hgsc.bcm.edu	36	12	27842061	27842061	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020782	exon3	c.C1213T	p.P405S	.	.	.
TMTC1	83857	hgsc.bcm.edu	36	12	29560580	29560580	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001193451	exon15	c.C2276T	p.A759V	.	.	.
TEAD4	7004	hgsc.bcm.edu	36	12	3001271	3001271	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003213	exon10	c.T724C	p.Y242H	.	.	.
DNM1L	10059	hgsc.bcm.edu	36	12	32775306	32775306	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012062	exon10	c.G1171A	p.D391N	.	.	.
PKP2	5318	hgsc.bcm.edu	36	12	32922522	32922522	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004572	exon3	c.G559A	p.A187T	.	.	.
LRRK2	120892	hgsc.bcm.edu	36	12	38954780	38954780	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198578	exon15	c.G1785A	p.M595I	.	.	.
CNTN1	1272	hgsc.bcm.edu	36	12	39624226	39624226	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_175038	exon13	c.A1637C	p.Q546P	.	.	.
C12orf4	57102	hgsc.bcm.edu	36	12	4497537	4497537	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020374	exon8	c.C981T	p.G327G	.	.	.
NDUFA9	4704	hgsc.bcm.edu	36	12	4664742	4664742	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005002	exon10	c.A953G	p.K318R	.	.	.
LASS5	91012	hgsc.bcm.edu	36	12	48815885	48815885	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_147190	exon8	c.G769A	p.A257T	.	.	.
DIP2B	57609	hgsc.bcm.edu	36	12	49377221	49377221	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173602	exon17	c.C2044T	p.R682C	.	.	.
ANKRD33	341405	hgsc.bcm.edu	36	12	50569524	50569524	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130015	exon4	c.C223T	p.R75W	.	.	.
ACVR1B	91	hgsc.bcm.edu	36	12	50666951	50666951	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020327	exon7	c.G1063A	p.G355R	.	.	.
NR4A1	3164	hgsc.bcm.edu	36	12	50736190	50736190	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002135	exon4	c.C986T	p.A329V	.	.	.
KRT75	9119	hgsc.bcm.edu	36	12	51114055	51114055	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004693	exon1	c.G301T	p.G101W	.	.	.
KRT76	51350	hgsc.bcm.edu	36	12	51451124	51451124	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015848	exon7	c.G1410A	p.E470E	.	.	.
RARG	5916	hgsc.bcm.edu	36	12	51894268	51894268	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000966	exon7	c.C655T	p.R219C	.	.	.
GPR84	53831	hgsc.bcm.edu	36	12	53043820	53043820	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020370	exon2	c.T83G	p.V28G	.	.	.
ATP5B	506	hgsc.bcm.edu	36	12	55323576	55323576	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001686	exon5	c.G670A	p.A224T	.	.	.
MARS	4141	hgsc.bcm.edu	36	12	56192924	56192924	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004990	exon15	c.C1877A	p.P626H	.	.	.
B4GALNT1	2583	hgsc.bcm.edu	36	12	56308227	56308227	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001478	exon9	c.C1088T	p.A363V	.	.	.
AGAP2	116986	hgsc.bcm.edu	36	12	56411664	56411664	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014770	exon9	c.G974A	p.R325Q	.	.	.
AVIL	10677	hgsc.bcm.edu	36	12	56483697	56483697	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006576	exon14	c.C1694T	p.A565V	.	.	.
VWF	7450	hgsc.bcm.edu	36	12	5998026	5998026	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000552	exon28	c.G4819A	p.V1607I	.	.	.
DPY19L2	283417	hgsc.bcm.edu	36	12	62260832	62260832	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173812	exon19	c.A1777G	p.I593V	.	.	.
WIF1	11197	hgsc.bcm.edu	36	12	63735254	63735254	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007191	exon9	c.G929A	p.C310Y	.	.	.
HELB	92797	hgsc.bcm.edu	36	12	64982722	64982722	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033647	exon1	c.G72C	p.E24D	.	.	.
GNB3	2784	hgsc.bcm.edu	36	12	6823360	6823360	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002075	exon9	c.G656A	p.R219H	.	.	.
TRHDE	29953	hgsc.bcm.edu	36	12	71301221	71301221	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013381	exon14	c.G2401T	p.G801X	.	.	.
CLEC4A	50856	hgsc.bcm.edu	36	12	8182082	8182082	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_194450	exon5	c.G547A	p.G183S	.	.	.
LRRIQ1	84125	hgsc.bcm.edu	36	12	83965279	83965279	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032165	exon6	c.G578T	p.R193M	.	.	.
CLEC6A	93978	hgsc.bcm.edu	36	12	8499989	8499989	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001007033	exon1	c.G15A	p.Q5Q	.	.	.
FAM113B	91523	hgsc.bcm.edu	36	12	45916004	45916005	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	CA	CA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138371	exon2	c.891_892del	p.297_298del	.	.	.
DNAJC14	85406	hgsc.bcm.edu	36	12	54507327	54507329	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	CTT	CTT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032364	exon2	c.1381_1383del	p.461_461del	.	.	.
ATF7IP	55729	hgsc.bcm.edu	36	12	14469228	14469228	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018179	exon2	c.T1112C	p.V371A	.	.	.
TUBGCP5	114791	hgsc.bcm.edu	36	15	20414393	20414393	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052903	exon15	c.G1973C	p.S658T	.	.	.
C15orf2	23742	hgsc.bcm.edu	36	15	22474609	22474609	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018958	exon1	c.C2502T	p.V834V	.	.	.
ATP10A	57194	hgsc.bcm.edu	36	15	23517911	23517911	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024490	exon7	c.C1349A	p.S450Y	.	.	.
GABRB3	2562	hgsc.bcm.edu	36	15	24376629	24376629	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021912	exon6	c.A612G	p.E204E	.	.	.
MTMR15	22909	hgsc.bcm.edu	36	15	29016713	29016713	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014967	exon14	c.G3016A	p.V1006M	.	.	.
TMEM85	51234	hgsc.bcm.edu	36	15	32307999	32307999	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016454	exon4	c.G433A	p.A145T	.	.	.
LPCAT4	254531	hgsc.bcm.edu	36	15	32443192	32443192	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153613	exon6	c.C673T	p.P225S	.	.	.
INO80	54617	hgsc.bcm.edu	36	15	39153871	39153871	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017553	exon10	c.A1316G	p.Q439R	.	.	.
EXD1	161829	hgsc.bcm.edu	36	15	39263930	39263930	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152596	exon10	c.G1036T	p.G346W	.	.	.
RPAP1	26015	hgsc.bcm.edu	36	15	39615003	39615003	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015540	exon5	c.G540A	p.E180E	.	.	.
TYRO3	7301	hgsc.bcm.edu	36	15	39652569	39652569	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006293	exon16	c.C1953T	p.F651F	.	.	.
CAPN3	825	hgsc.bcm.edu	36	15	40488841	40488841	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_212465	exon20	c.C1684T	p.R562W	.	.	.
ZFP106	64397	hgsc.bcm.edu	36	15	40530148	40530148	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022473	exon2	c.A1545G	p.K515K	.	.	.
EPB42	2038	hgsc.bcm.edu	36	15	41281460	41281460	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114134	exon12	c.A1787C	p.E596A	.	.	.
EPB42	2038	hgsc.bcm.edu	36	15	41288772	41288772	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114134	exon6	c.C824T	p.A275V	.	.	.
DUOX2	50506	hgsc.bcm.edu	36	15	43179260	43179260	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014080	exon25	c.C3307T	p.R1103C	.	.	.
SHF	90525	hgsc.bcm.edu	36	15	43257768	43257768	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138356	exon3	c.C332T	p.P111L	.	.	.
SLC24A5	283652	hgsc.bcm.edu	36	15	46201379	46201379	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_205850	exon2	c.C155T	p.S52L	.	.	.
AP4E1	23431	hgsc.bcm.edu	36	15	49082051	49082051	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007347	exon21	c.G3314A	p.R1105Q	.	.	.
TNFAIP8L3	388121	hgsc.bcm.edu	36	15	49137782	49137782	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207381	exon3	c.C467T	p.T156I	.	.	.
ALDH1A2	8854	hgsc.bcm.edu	36	15	56145061	56145061	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003888	exon1	c.C80T	p.P27L	.	.	.
RORA	6095	hgsc.bcm.edu	36	15	58706786	58706786	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_134260	exon1	c.G80A	p.R27Q	.	.	.
APH1B	83464	hgsc.bcm.edu	36	15	61365875	61365875	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031301	exon3	c.C350T	p.A117V	.	.	.
CA12	771	hgsc.bcm.edu	36	15	61419615	61419615	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001218	exon7	c.C672A	p.S224S	.	.	.
ZNF609	23060	hgsc.bcm.edu	36	15	62759990	62759990	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015042	exon7	c.G4038T	p.G1346G	.	.	.
PKM2	5315	hgsc.bcm.edu	36	15	70296894	70296894	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002654	exon3	c.C156T	p.G52G	.	.	.
SEMA7A	8482	hgsc.bcm.edu	36	15	72491024	72491024	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003612	exon12	c.C1503T	p.H501H	.	.	.
SEMA7A	8482	hgsc.bcm.edu	36	15	72494288	72494288	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003612	exon9	c.C1039T	p.R347C	.	.	.
UBL7	84993	hgsc.bcm.edu	36	15	72529388	72529388	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_201265	exon7	c.G606A	p.M202I	.	.	.
CLK3	1198	hgsc.bcm.edu	36	15	72706991	72706991	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130028	exon9	c.C1415T	p.A472V	.	.	.
CYP1A2	1544	hgsc.bcm.edu	36	15	72830635	72830635	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000761	exon3	c.C884T	p.P295L	.	.	.
CIB2	10518	hgsc.bcm.edu	36	15	76185231	76185231	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006383	exon5	c.C447T	p.C149C	.	.	.
ARNT2	9915	hgsc.bcm.edu	36	15	78549819	78549819	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014862	exon4	c.A400G	p.T134A	.	.	.
KIAA1199	57214	hgsc.bcm.edu	36	15	79008517	79008517	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018689	exon20	c.G2559A	p.R853R	.	.	.
BNC1	646	hgsc.bcm.edu	36	15	81723377	81723377	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001717	exon4	c.A1630G	p.I544V	.	.	.
ZNF592	9640	hgsc.bcm.edu	36	15	83128601	83128601	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014630	exon4	c.C1691T	p.P564L	.	.	.
ALPK3	57538	hgsc.bcm.edu	36	15	83212536	83212536	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020778	exon14	c.C5569A	p.Q1857K	.	.	.
PLIN	5346	hgsc.bcm.edu	36	15	88014381	88014381	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002666	exon5	c.G432T	p.G144G	.	.	.
BLM	641	hgsc.bcm.edu	36	15	89109563	89109563	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000057	exon9	c.C2108T	p.A703V	.	.	.
MAN2A2	4122	hgsc.bcm.edu	36	15	89262493	89262493	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006122	exon20	c.C3060T	p.N1020N	.	.	.
UNC45A	55898	hgsc.bcm.edu	36	15	89289281	89289281	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001039675	exon12	c.T1138A	p.C380S	.	.	.
PRC1	9055	hgsc.bcm.edu	36	15	89320984	89320984	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003981	exon9	c.C1129T	p.R377X	.	.	.
SV2B	9899	hgsc.bcm.edu	36	15	89636785	89636785	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014848	exon14	c.G2051A	p.X684X	.	.	.
ABHD2	11057	hgsc.bcm.edu	36	15	87460752	87460753	+	Frame_Shift_Del	DEL	AA	AA	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	AA	AA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152924	exon3	c.190_191del	p.64_64del	.	.	.
UNC45A	55898	hgsc.bcm.edu	36	15	89289285	89289286	+	Frame_Shift_Del	DEL	AA	AA	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	AA	AA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001039675	exon12	c.1142_1143del	p.381_381del	.	.	.
GAR1	54433	hgsc.bcm.edu	36	4	110964629	110964629	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032993	exon6	c.G631T	p.G211C	.	.	.
NEUROG2	63973	hgsc.bcm.edu	36	4	113655364	113655364	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024019	exon2	c.G717A	p.S239S	.	.	.
NDST3	9348	hgsc.bcm.edu	36	4	119194542	119194542	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004784	exon2	c.A29G	p.H10R	.	.	.
EXOSC9	5393	hgsc.bcm.edu	36	4	122945359	122945359	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001034194	exon5	c.A517G	p.T173A	.	.	.
ANKRD50	57182	hgsc.bcm.edu	36	4	125810666	125810666	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001167882	exon3	c.C2679T	p.N893N	.	.	.
FAT4	79633	hgsc.bcm.edu	36	4	126591992	126591992	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024582	exon9	c.G10371A	p.P3457P	.	.	.
MFSD8	256471	hgsc.bcm.edu	36	4	129105732	129105732	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152778	exon2	c.G7T	p.G3C	.	.	.
BOD1L	259282	hgsc.bcm.edu	36	4	13210935	13210935	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_148894	exon10	c.T6687C	p.A2229A	.	.	.
PCDH10	57575	hgsc.bcm.edu	36	4	134291164	134291164	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032961	exon1	c.G419A	p.R140H	.	.	.
PCDH10	57575	hgsc.bcm.edu	36	4	134292174	134292174	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032961	exon1	c.G1429A	p.V477M	.	.	.
PCDH10	57575	hgsc.bcm.edu	36	4	134293154	134293154	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032961	exon1	c.G2409T	p.P803P	.	.	.
PCDH18	54510	hgsc.bcm.edu	36	4	138662219	138662219	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019035	exon4	c.C2822T	p.S941F	.	.	.
PCDH18	54510	hgsc.bcm.edu	36	4	138670505	138670505	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019035	exon1	c.G2188A	p.D730N	.	.	.
OTUD4	54726	hgsc.bcm.edu	36	4	146296191	146296191	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001102653	exon9	c.T593A	p.I198N	.	.	.
ZNF827	152485	hgsc.bcm.edu	36	4	146905601	146905601	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178835	exon13	c.C3219T	p.T1073T	.	.	.
LRBA	987	hgsc.bcm.edu	36	4	151985310	151985310	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006726	exon27	c.G4411A	p.A1471T	.	.	.
LRBA	987	hgsc.bcm.edu	36	4	152061852	152061852	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006726	exon5	c.C593A	p.P198H	.	.	.
FBXW7	55294	hgsc.bcm.edu	36	4	153487546	153487546	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018315	exon3	c.C472A	p.L158I	.	.	.
TIGD4	201798	hgsc.bcm.edu	36	4	153910298	153910298	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145720	exon2	c.G1309A	p.D437N	.	.	.
TKTL2	84076	hgsc.bcm.edu	36	4	164613049	164613049	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032136	exon1	c.G1288A	p.V430I	.	.	.
DDX60	55601	hgsc.bcm.edu	36	4	169425685	169425685	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017631	exon21	c.C2811A	p.Y937X	.	.	.
DCTD	1635	hgsc.bcm.edu	36	4	184073640	184073640	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001921	exon2	c.T76A	p.S26T	.	.	.
C4orf41	60684	hgsc.bcm.edu	36	4	184865018	184865018	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_199053	exon28	c.C3120T	p.T1040T	.	.	.
KLKB1	3818	hgsc.bcm.edu	36	4	187416254	187416254	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000892	exon15	c.G1811A	p.R604H	.	.	.
WHSC1	7468	hgsc.bcm.edu	36	4	1889865	1889865	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133331	exon6	c.C1127A	p.S376Y	.	.	.
ZFP42	132625	hgsc.bcm.edu	36	4	189161085	189161085	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_174900	exon4	c.A130C	p.S44R	.	.	.
PI4K2B	55300	hgsc.bcm.edu	36	4	24887870	24887870	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018323	exon10	c.C1409T	p.T470I	.	.	.
C4orf8	8603	hgsc.bcm.edu	36	4	2666513	2666513	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003704	exon15	c.C2262T	p.Y754Y	.	.	.
NOP14	8602	hgsc.bcm.edu	36	4	2925054	2925054	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003703	exon5	c.C729T	p.D243D	.	.	.
RGS12	6002	hgsc.bcm.edu	36	4	3287854	3287854	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002926	exon2	c.G159T	p.A53A	.	.	.
ARAP2	116984	hgsc.bcm.edu	36	4	35907334	35907334	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015230	exon2	c.G170A	p.R57H	.	.	.
WDR21B	285429	hgsc.bcm.edu	36	4	41678780	41678780	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001029955	exon1	c.G214A	p.D72N	.	.	.
LYAR	55646	hgsc.bcm.edu	36	4	4327129	4327129	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145725	exon7	c.C698T	p.A233V	.	.	.
CRMP1	1400	hgsc.bcm.edu	36	4	5878184	5878184	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001313	exon13	c.C1565T	p.S522L	.	.	.
TMPRSS11D	9407	hgsc.bcm.edu	36	4	68390900	68390900	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004262	exon4	c.G288A	p.Q96Q	.	.	.
UGT2B17	7367	hgsc.bcm.edu	36	4	69086141	69086141	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001077	exon6	c.T1390C	p.W464R	.	.	.
C4orf35	85438	hgsc.bcm.edu	36	4	71236225	71236225	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033122	exon1	c.G880T	p.G294X	.	.	.
SLC4A4	8671	hgsc.bcm.edu	36	4	72642333	72642333	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001134742	exon22	c.A2804C	p.H935P	.	.	.
ADAMTS3	9508	hgsc.bcm.edu	36	4	73380310	73380310	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014243	exon19	c.G2648A	p.R883H	ADAMTS3,lung,NS,Substitution - Missense,0	.	.
ANKRD17	26057	hgsc.bcm.edu	36	4	74176074	74176074	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198889	exon28	c.C5382T	p.S1794S	.	.	.
ANKRD17	26057	hgsc.bcm.edu	36	4	74203412	74203412	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198889	exon21	c.C3292T	p.R1098C	.	.	.
ANKRD17	26057	hgsc.bcm.edu	36	4	74224257	74224257	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032217	exon15	c.G2940A	p.L980L	.	.	.
CDKL2	8999	hgsc.bcm.edu	36	4	76770033	76770033	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003948	exon2	c.T164C	p.L55P	.	.	.
SEPT11	55752	hgsc.bcm.edu	36	4	78155183	78155183	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018243	exon5	c.G676A	p.A226T	.	.	.
SH3TC1	54436	hgsc.bcm.edu	36	4	8293511	8293511	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018986	exon18	c.C3940T	p.R1314C	.	.	.
LIN54	132660	hgsc.bcm.edu	36	4	84119163	84119163	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001115008	exon3	c.G42A	p.T14T	.	.	.
WDFY3	23001	hgsc.bcm.edu	36	4	85891820	85891820	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014991	exon36	c.A5813T	p.N1938I	.	.	.
SPARCL1	8404	hgsc.bcm.edu	36	4	88634300	88634300	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001128310	exon5	c.A676G	p.R226G	.	.	.
FAM13A	10144	hgsc.bcm.edu	36	4	89921519	89921519	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014883	exon11	c.T1278C	p.L426L	.	.	.
PRPS1	5631	hgsc.bcm.edu	36	X	106772275	106772275	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002764	exon4	c.C429T	p.D143D	.	.	.
RGAG1	57529	hgsc.bcm.edu	36	X	109583252	109583252	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020769	exon3	c.C2751A	p.P917P	.	.	.
WDR44	54521	hgsc.bcm.edu	36	X	117416385	117416385	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001184966	exon7	c.G1123A	p.A375T	.	.	.
GRIA3	2892	hgsc.bcm.edu	36	X	122389486	122389486	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007325	exon12	c.C1891T	p.R631C	.	.	.
BCORL1	63035	hgsc.bcm.edu	36	X	128986989	128986989	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021946	exon6	c.G4032C	p.E1344D	.	.	.
AIFM1	9131	hgsc.bcm.edu	36	X	129102252	129102252	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145812	exon7	c.G706C	p.D236H	.	.	.
PLAC1	10761	hgsc.bcm.edu	36	X	133528196	133528196	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021796	exon3	c.C183G	p.C61W	.	.	.
SLC9A6	10479	hgsc.bcm.edu	36	X	134949949	134949949	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001177651	exon16	c.A1620G	p.T540T	.	.	.
MCF2	4168	hgsc.bcm.edu	36	X	138506382	138506382	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001099855	exon22	c.T2449C	p.C817R	.	.	.
FMR1	2332	hgsc.bcm.edu	36	X	146837973	146837973	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001185082	exon16	c.C1678T	p.R560C	.	.	.
MAMLD1	10046	hgsc.bcm.edu	36	X	149389524	149389524	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001177466	exon2	c.C946T	p.R316C	.	.	.
MTM1	4534	hgsc.bcm.edu	36	X	149538257	149538257	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000252	exon6	c.T431C	p.L144P	.	.	.
CNGA2	1260	hgsc.bcm.edu	36	X	150663107	150663107	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005140	exon7	c.C1476T	p.Y492Y	.	.	.
NSDHL	50814	hgsc.bcm.edu	36	X	151788171	151788171	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001129765	exon9	c.C977A	p.P326H	.	.	.
ATP2B3	492	hgsc.bcm.edu	36	X	152478497	152478497	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021949	exon16	c.C2742T	p.Y914Y	.	.	.
TKTL1	8277	hgsc.bcm.edu	36	X	153196765	153196765	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145933	exon7	c.G895A	p.A299T	.	.	.
SCML1	6322	hgsc.bcm.edu	36	X	17679965	17679965	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006746	exon6	c.T732G	p.D244E	.	.	.
BEND2	139105	hgsc.bcm.edu	36	X	18144589	18144589	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153346	exon2	c.C211A	p.H71N	.	.	.
SCML2	10389	hgsc.bcm.edu	36	X	18174847	18174847	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006089	exon13	c.A1593G	p.G531G	.	.	.
IL1RAPL1	11141	hgsc.bcm.edu	36	X	29883639	29883639	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014271	exon11	c.C1872T	p.Y624Y	.	.	.
MAGEB1	4112	hgsc.bcm.edu	36	X	30178730	30178730	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002363	exon4	c.A199G	p.T67A	.	.	.
DMD	1756	hgsc.bcm.edu	36	X	32382840	32382840	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004006	exon26	c.G3463T	p.G1155C	.	.	.
DUSP21	63904	hgsc.bcm.edu	36	X	44588418	44588418	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022076	exon1	c.C96T	p.S32S	.	.	.
GATA1	2623	hgsc.bcm.edu	36	X	48535334	48535334	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002049	exon3	c.C360T	p.A120A	.	.	.
PAGE1	8712	hgsc.bcm.edu	36	X	49340985	49340985	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003785	exon5	c.A408G	p.T136T	.	.	.
CCNB3	85417	hgsc.bcm.edu	36	X	50069911	50069911	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033031	exon5	c.G2002C	p.E668Q	.	.	.
CCNB3	85417	hgsc.bcm.edu	36	X	50111077	50111077	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033670	exon7	c.G746A	p.S249N	.	.	.
SMC1A	8243	hgsc.bcm.edu	36	X	53449606	53449606	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006306	exon10	c.G1553A	p.R518H	.	.	.
SMC1A	8243	hgsc.bcm.edu	36	X	53455922	53455922	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006306	exon6	c.G861A	p.K287K	.	.	.
PHF8	23133	hgsc.bcm.edu	36	X	54065998	54065998	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001184898	exon3	c.T102C	p.C34C	.	.	.
WNK3	65267	hgsc.bcm.edu	36	X	54352333	54352333	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001002838	exon4	c.C851T	p.T284M	.	.	.
ERCC6L	54821	hgsc.bcm.edu	36	X	71342222	71342222	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017669	exon2	c.C3120A	p.T1040T	.	.	.
PHKA1	5255	hgsc.bcm.edu	36	X	71771733	71771733	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001172436	exon16	c.C1711A	p.L571I	.	.	.
NAP1L2	4674	hgsc.bcm.edu	36	X	72350834	72350834	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021963	exon1	c.A220G	p.K74E	.	.	.
PGK1	5230	hgsc.bcm.edu	36	X	77246536	77246536	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000291	exon1	c.A43G	p.K15E	.	.	.
CYLC1	1538	hgsc.bcm.edu	36	X	83028246	83028246	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021118	exon5	c.T1954C	p.X652Q	.	.	.
DACH2	117154	hgsc.bcm.edu	36	X	85836788	85836788	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_053281	exon5	c.G881T	p.G294V	.	.	.
MED12	9968	hgsc.bcm.edu	36	X	70277823	70277825	+	In_Frame_Del	DEL	CAG	CAG	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	CAG	CAG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005120	exon43	c.6286_6288del	p.2096_2096del	.	.	.
LONRF2	164832	hgsc.bcm.edu	36	2	100273285	100273285	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198461	exon10	c.T1787C	p.I596T	.	.	.
NMS	129521	hgsc.bcm.edu	36	2	100453396	100453396	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001011717	exon1	c.G14A	p.R5H	.	.	.
IL18R1	8809	hgsc.bcm.edu	36	2	102354855	102354855	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003855	exon3	c.C313T	p.Q105X	.	.	.
ODC1	4953	hgsc.bcm.edu	36	2	10501826	10501826	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002539	exon5	c.C295T	p.Q99X	.	.	.
TGFBRAP1	9392	hgsc.bcm.edu	36	2	105291121	105291121	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004257	exon2	c.C70T	p.R24C	.	.	.
TTL	150465	hgsc.bcm.edu	36	2	112968325	112968325	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153712	exon3	c.G371T	p.R124M	.	.	.
SLC20A1	6574	hgsc.bcm.edu	36	2	113133411	113133411	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005415	exon8	c.G1208A	p.C403Y	.	.	.
GREB1	9687	hgsc.bcm.edu	36	2	11646427	11646427	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014668	exon10	c.G1264A	p.E422K	.	.	.
TFCP2L1	29842	hgsc.bcm.edu	36	2	121709268	121709268	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014553	exon11	c.C1093T	p.R365W	.	.	.
GPR148	344561	hgsc.bcm.edu	36	2	131203262	131203262	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207364	exon1	c.G68A	p.S23N	.	.	.
LCT	3938	hgsc.bcm.edu	36	2	136282653	136282653	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002299	exon8	c.T3734C	p.M1245T	.	.	.
LRP1B	53353	hgsc.bcm.edu	36	2	140809655	140809655	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018557	exon78	c.G12115T	p.G4039W	.	.	.
LRP1B	53353	hgsc.bcm.edu	36	2	140975757	140975757	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018557	exon55	c.A8819G	p.Q2940R	.	.	.
LRP1B	53353	hgsc.bcm.edu	36	2	141010720	141010720	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018557	exon46	c.G7542T	p.S2514S	.	.	.
LRP1B	53353	hgsc.bcm.edu	36	2	141174641	141174641	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018557	exon41	c.G6447T	p.R2149S	.	.	.
LRP1B	53353	hgsc.bcm.edu	36	2	141315078	141315078	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018557	exon30	c.T4993C	p.W1665R	.	.	.
LRP1B	53353	hgsc.bcm.edu	36	2	141523140	141523140	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018557	exon11	c.T1674C	p.P558P	.	.	.
GTDC1	79712	hgsc.bcm.edu	36	2	144421159	144421159	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001164629	exon12	c.C1307T	p.P436L	.	.	.
RIF1	55183	hgsc.bcm.edu	36	2	151984999	151984999	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001177664	exon7	c.G553A	p.A185T	.	.	.
CCDC148	130940	hgsc.bcm.edu	36	2	158874248	158874248	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138803	exon9	c.C1053T	p.S351S	.	.	.
PLA2R1	22925	hgsc.bcm.edu	36	2	160578060	160578060	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007366	exon10	c.G1624A	p.G542S	.	.	.
PLA2R1	22925	hgsc.bcm.edu	36	2	160593088	160593088	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007366	exon6	c.A986G	p.H329R	.	.	.
LRP2	4036	hgsc.bcm.edu	36	2	169809626	169809626	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004525	exon22	c.C3253T	p.R1085C	LRP2,central_nervous_system,brain,Substitution - Missense,+1	.	.
LRP2	4036	hgsc.bcm.edu	36	2	169853817	169853817	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004525	exon9	c.A1007C	p.Y336S	.	.	.
MAP1D	254042	hgsc.bcm.edu	36	2	172652205	172652205	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_199227	exon8	c.A819G	p.L273L	.	.	.
TTN	7273	hgsc.bcm.edu	36	2	179373402	179373402	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133379	exon4	c.G548A	p.G183E	.	.	.
CCDC141	285025	hgsc.bcm.edu	36	2	179441098	179441098	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173648	exon16	c.T2474C	p.I825T	.	.	.
SESTD1	91404	hgsc.bcm.edu	36	2	179764797	179764797	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178123	exon2	c.T17C	p.I6T	.	.	.
NEUROD1	4760	hgsc.bcm.edu	36	2	182250860	182250860	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002500	exon2	c.C973T	p.R325C	.	.	.
ANKAR	150709	hgsc.bcm.edu	36	2	190311546	190311546	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144708	exon19	c.T3593C	p.L1198P	.	.	.
HECW2	57520	hgsc.bcm.edu	36	2	196865654	196865654	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020760	exon14	c.C2880T	p.D960D	.	.	.
ANKRD44	91526	hgsc.bcm.edu	36	2	197578789	197578789	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001195144	exon21	c.C2221T	p.H741Y	.	.	.
PLCL1	5334	hgsc.bcm.edu	36	2	198657534	198657534	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006226	exon2	c.G1048A	p.E350K	.	.	.
PLCL1	5334	hgsc.bcm.edu	36	2	198659000	198659000	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006226	exon2	c.C2514T	p.H838H	.	.	.
CASP8	841	hgsc.bcm.edu	36	2	201858275	201858275	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033356	exon7	c.C1249T	p.R417X	.	.	.
NOP58	51602	hgsc.bcm.edu	36	2	202868805	202868805	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015934	exon10	c.G1071T	p.K357N	.	.	.
PUM2	23369	hgsc.bcm.edu	36	2	20326679	20326679	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015317	exon13	c.C1981T	p.R661X	.	.	.
PIKFYVE	200576	hgsc.bcm.edu	36	2	208897192	208897192	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015040	exon18	c.C2272T	p.R758W	.	.	.
PTH2R	5746	hgsc.bcm.edu	36	2	209010745	209010745	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005048	exon4	c.A305G	p.H102R	.	.	.
MAP2	4133	hgsc.bcm.edu	36	2	210226152	210226152	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031847	exon4	c.C13T	p.R5W	.	.	.
MAP2	4133	hgsc.bcm.edu	36	2	210226252	210226252	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031847	exon4	c.G113T	p.G38V	.	.	.
MAP2	4133	hgsc.bcm.edu	36	2	210267543	210267543	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002374	exon7	c.A2404G	p.M802V	.	.	.
APOB	338	hgsc.bcm.edu	36	2	21083355	21083355	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000384	exon26	c.T9890C	p.L3297S	.	.	.
APOB	338	hgsc.bcm.edu	36	2	21085991	21085991	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000384	exon26	c.A7254G	p.K2418K	.	.	.
SPAG16	79582	hgsc.bcm.edu	36	2	214502929	214502929	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024532	exon12	c.T1215C	p.S405S	.	.	.
SPAG16	79582	hgsc.bcm.edu	36	2	214681170	214681170	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024532	exon14	c.A1533G	p.I511M	.	.	.
ABCA12	26154	hgsc.bcm.edu	36	2	215526956	215526956	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173076	exon44	c.T6514C	p.Y2172H	.	.	.
ABCA12	26154	hgsc.bcm.edu	36	2	215592644	215592644	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173076	exon12	c.A1409G	p.D470G	.	.	.
IHH	3549	hgsc.bcm.edu	36	2	219633142	219633142	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002181	exon1	c.G292A	p.G98S	.	.	.
GMPPA	29926	hgsc.bcm.edu	36	2	220075360	220075360	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_205847	exon6	c.C442T	p.Q148X	.	.	.
CHPF	79586	hgsc.bcm.edu	36	2	220113934	220113934	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024536	exon3	c.A1046G	p.Y349C	.	.	.
SLC4A3	6508	hgsc.bcm.edu	36	2	220201520	220201520	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005070	exon3	c.C201T	p.S67S	.	.	.
SCG2	7857	hgsc.bcm.edu	36	2	224171945	224171945	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003469	exon2	c.C300T	p.P100P	.	.	.
CUL3	8452	hgsc.bcm.edu	36	2	225047257	225047257	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003590	exon16	c.A2256G	p.E752E	.	.	.
TRIP12	9320	hgsc.bcm.edu	36	2	230364163	230364163	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004238	exon29	c.T4239C	p.G1413G	.	.	.
TRIP12	9320	hgsc.bcm.edu	36	2	230370755	230370755	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004238	exon23	c.T3294C	p.H1098H	.	.	.
CHRND	1144	hgsc.bcm.edu	36	2	233107001	233107001	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000751	exon10	c.G1164T	p.E388D	.	.	.
GIGYF2	26058	hgsc.bcm.edu	36	2	233379483	233379483	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001103148	exon14	c.G1660A	p.A554T	.	.	.
SPP2	6694	hgsc.bcm.edu	36	2	234633856	234633856	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006944	exon4	c.C438T	p.S146S	.	.	.
AGAP1	116987	hgsc.bcm.edu	36	2	236504260	236504260	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001037131	exon12	c.C1437T	p.D479D	.	.	.
COL6A3	1293	hgsc.bcm.edu	36	2	237914333	237914333	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_057166	exon35	c.C6144T	p.P2048P	.	.	.
COL6A3	1293	hgsc.bcm.edu	36	2	237924569	237924569	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_057166	exon24	c.C4938T	p.S1646S	.	.	.
COL6A3	1293	hgsc.bcm.edu	36	2	237937751	237937751	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_057166	exon10	c.T4077C	p.S1359S	.	.	.
COL6A3	1293	hgsc.bcm.edu	36	2	237940304	237940304	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_057166	exon8	c.G3444A	p.S1148S	.	.	.
HDAC4	9759	hgsc.bcm.edu	36	2	239731263	239731263	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006037	exon8	c.A818G	p.D273G	.	.	.
THAP4	51078	hgsc.bcm.edu	36	2	242221365	242221365	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015963	exon2	c.C880T	p.Q294X	.	.	.
DNMT3A	1788	hgsc.bcm.edu	36	2	25324565	25324565	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_175629	exon7	c.G700A	p.G234R	.	.	.
KIF3C	3797	hgsc.bcm.edu	36	2	26005427	26005427	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002254	exon8	c.G2306A	p.R769Q	.	.	.
AGBL5	60509	hgsc.bcm.edu	36	2	27131094	27131094	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001035507	exon5	c.G644T	p.G215V	.	.	.
CAD	790	hgsc.bcm.edu	36	2	27310397	27310397	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004341	exon22	c.C3417T	p.A1139A	.	.	.
ZNF513	130557	hgsc.bcm.edu	36	2	27454319	27454319	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144631	exon4	c.G1223A	p.R408H	.	.	.
IFT172	26160	hgsc.bcm.edu	36	2	27535196	27535196	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015662	exon26	c.C2831T	p.A944V	.	.	.
TTC27	55622	hgsc.bcm.edu	36	2	32896105	32896105	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001193509	exon19	c.C2236T	p.R746W	.	.	.
PRKD3	23683	hgsc.bcm.edu	36	2	37397071	37397071	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005813	exon1	c.C101T	p.T34M	.	.	.
DHX57	90957	hgsc.bcm.edu	36	2	38935771	38935771	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198963	exon8	c.G1837A	p.V613I	.	.	.
CCDC88A	55704	hgsc.bcm.edu	36	2	55376478	55376478	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001135597	exon31	c.G5307A	p.A1769A	.	.	.
PAPOLG	64895	hgsc.bcm.edu	36	2	60861362	60861362	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022894	exon10	c.G850A	p.V284M	.	.	.
REL	5966	hgsc.bcm.edu	36	2	60972346	60972346	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002908	exon2	c.T35C	p.I12T	.	.	.
TMEM17	200728	hgsc.bcm.edu	36	2	62583407	62583407	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198276	exon2	c.C127T	p.L43L	.	.	.
PELI1	57162	hgsc.bcm.edu	36	2	64176798	64176798	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020651	exon6	c.C655T	p.R219C	.	.	.
GFPT1	2673	hgsc.bcm.edu	36	2	69428927	69428927	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002056	exon10	c.G835A	p.D279N	.	.	.
SNRNP27	11017	hgsc.bcm.edu	36	2	69977082	69977082	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006857	exon3	c.C166T	p.R56X	.	.	.
DYSF	8291	hgsc.bcm.edu	36	2	71693974	71693974	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130982	exon41	c.G4432A	p.D1478N	.	.	.
CYP26B1	56603	hgsc.bcm.edu	36	2	72224631	72224631	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019885	exon2	c.C424T	p.R142C	.	.	.
REG3G	130120	hgsc.bcm.edu	36	2	79108910	79108910	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001008387	exon6	c.G528T	p.X176Y	.	.	.
LRRTM1	347730	hgsc.bcm.edu	36	2	80383765	80383765	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178839	exon2	c.C691T	p.R231C	.	.	.
ELMOD3	84173	hgsc.bcm.edu	36	2	85470803	85470803	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001135021	exon14	c.G847A	p.V283M	.	.	.
VAMP5	10791	hgsc.bcm.edu	36	2	85672394	85672394	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006634	exon2	c.G39A	p.A13A	.	.	.
FABP1	2168	hgsc.bcm.edu	36	2	88206849	88206849	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001443	exon2	c.G201T	p.E67D	.	.	.
SNRNP200	23020	hgsc.bcm.edu	36	2	96328165	96328165	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014014	exon8	c.G885A	p.T295T	.	.	.
AFF3	3899	hgsc.bcm.edu	36	2	99570118	99570118	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001025108	exon15	c.A2596G	p.S866G	.	.	.
WDR33	55339	hgsc.bcm.edu	36	2	128180510	128180511	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	TG	TG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018383	exon22	c.3867_3868del	p.1289_1290del	.	.	.
HOXD1	3231	hgsc.bcm.edu	36	2	176762813	176762814	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	CT	CT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024501	exon2	c.684_685del	p.228_229del	.	.	.
HDAC4	9759	hgsc.bcm.edu	36	2	239689524	239689525	+	Frame_Shift_Del	DEL	GA	GA	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	GA	GA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006037	exon16	c.2102_2103del	p.701_701del	.	.	.
FSHR	2492	hgsc.bcm.edu	36	2	49063769	49063770	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	CA	CA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181446	exon6	c.486_487del	p.162_163del	.	.	.
UGP2	7360	hgsc.bcm.edu	36	2	63964719	63964722	+	Frame_Shift_Del	DEL	TCAA	TCAA	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	TCAA	TCAA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001001521	exon5	c.530_533del	p.177_178del	.	.	.
TGFBR1	7046	hgsc.bcm.edu	36	9	100940076	100940076	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004612	exon4	c.C689T	p.A230V	.	.	.
TEX10	54881	hgsc.bcm.edu	36	9	102131325	102131325	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017746	exon7	c.C1543A	p.L515I	.	.	.
ABCA1	19	hgsc.bcm.edu	36	9	106596605	106596605	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005502	exon40	c.A5390C	p.N1797T	.	.	.
ZNF462	58499	hgsc.bcm.edu	36	9	108727004	108727004	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021224	exon3	c.A990G	p.R330R	.	.	.
PTPN3	5774	hgsc.bcm.edu	36	9	111239001	111239001	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002829	exon9	c.G658C	p.E220Q	.	.	.
LPAR1	1902	hgsc.bcm.edu	36	9	112743843	112743843	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001401	exon3	c.C472T	p.R158W	.	.	.
C9orf84	158401	hgsc.bcm.edu	36	9	113543657	113543657	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173521	exon9	c.C902T	p.A301V	.	.	.
KIAA1958	158405	hgsc.bcm.edu	36	9	114461479	114461479	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133465	exon4	c.G1460A	p.R487H	.	.	.
PRPF4	9128	hgsc.bcm.edu	36	9	115090321	115090321	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004697	exon10	c.G981A	p.A327A	.	.	.
RGS3	5998	hgsc.bcm.edu	36	9	115286283	115286283	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144488	exon7	c.G570A	p.T190T	.	.	.
TRIM32	22954	hgsc.bcm.edu	36	9	118500283	118500283	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001099679	exon2	c.G441T	p.R147R	.	.	.
ASTN2	23245	hgsc.bcm.edu	36	9	119016789	119016789	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014010	exon3	c.C684T	p.Y228Y	.	.	.
TLR4	7099	hgsc.bcm.edu	36	9	119516237	119516237	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138554	exon3	c.T2010C	p.G670G	.	.	.
TTLL11	158135	hgsc.bcm.edu	36	9	123791512	123791512	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001139442	exon4	c.G1322T	p.S441I	.	.	.
LHX6	26468	hgsc.bcm.edu	36	9	124019169	124019169	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_199160	exon5	c.C681T	p.N227N	.	.	.
OR1L8	138881	hgsc.bcm.edu	36	9	124370475	124370475	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001004454	exon1	c.G103A	p.V35M	.	.	.
TYRP1	7306	hgsc.bcm.edu	36	9	12699024	12699024	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000550	exon8	c.G1456A	p.A486T	.	.	.
ANGPTL2	23452	hgsc.bcm.edu	36	9	128910162	128910162	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012098	exon2	c.G670C	p.V224L	.	.	.
ST6GALNAC4	27090	hgsc.bcm.edu	36	9	129714369	129714369	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_175039	exon4	c.C610T	p.R204W	.	.	.
CRAT	1384	hgsc.bcm.edu	36	9	130900349	130900349	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000755	exon10	c.G1328T	p.R443M	.	.	.
SETX	23064	hgsc.bcm.edu	36	9	134129631	134129631	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015046	exon26	c.C7850T	p.T2617M	.	.	.
DDX31	64794	hgsc.bcm.edu	36	9	134535146	134535146	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022779	exon1	c.G312A	p.Q104Q	.	.	.
TSC1	7248	hgsc.bcm.edu	36	9	134788643	134788643	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001162426	exon6	c.C421T	p.P141S	.	.	.
RALGDS	5900	hgsc.bcm.edu	36	9	134974906	134974906	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006266	exon4	c.C512T	p.T171M	.	.	.
REXO4	57109	hgsc.bcm.edu	36	9	135267788	135267788	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020385	exon3	c.C647T	p.A216V	.	.	.
COL5A1	1289	hgsc.bcm.edu	36	9	136798138	136798138	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000093	exon22	c.C2106T	p.D702D	.	.	.
OLFM1	10439	hgsc.bcm.edu	36	9	137151640	137151640	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014279	exon6	c.A1199C	p.Y400S	.	.	.
MRPS2	51116	hgsc.bcm.edu	36	9	137535237	137535237	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016034	exon4	c.C328T	p.R110C	.	.	.
BNC2	54796	hgsc.bcm.edu	36	9	16425607	16425607	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017637	exon6	c.T2585A	p.V862D	.	.	.
BNC2	54796	hgsc.bcm.edu	36	9	16426678	16426678	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017637	exon6	c.A1514G	p.N505S	.	.	.
ADAMTSL1	92949	hgsc.bcm.edu	36	9	18523263	18523263	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052866	exon3	c.T210C	p.N70N	.	.	.
FAM154A	158297	hgsc.bcm.edu	36	9	18918273	18918273	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153707	exon4	c.C1202A	p.P401H	.	.	.
DENND4C	55667	hgsc.bcm.edu	36	9	19318048	19318048	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017925	exon12	c.T1433C	p.L478P	.	.	.
ACO1	48	hgsc.bcm.edu	36	9	32439014	32439014	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002197	exon20	c.G2491T	p.G831W	.	.	.
FANCG	2189	hgsc.bcm.edu	36	9	35065074	35065074	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004629	exon12	c.G1486A	p.A496T	.	.	.
KIAA1539	80256	hgsc.bcm.edu	36	9	35095807	35095807	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025182	exon8	c.C1335A	p.T445T	.	.	.
UNC13B	10497	hgsc.bcm.edu	36	9	35285792	35285792	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006377	exon8	c.C626G	p.P209R	UNC13B,large_intestine,colon,Substitution - Missense,+1	.	.
RUSC2	9853	hgsc.bcm.edu	36	9	35550334	35550334	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014806	exon10	c.G3697T	p.G1233C	.	.	.
TESK1	7016	hgsc.bcm.edu	36	9	35597950	35597950	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006285	exon7	c.T737C	p.V246A	.	.	.
SIT1	27240	hgsc.bcm.edu	36	9	35640554	35640554	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014450	exon2	c.G181A	p.A61T	.	.	.
TPM2	7169	hgsc.bcm.edu	36	9	35675704	35675704	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_213674	exon3	c.G314A	p.R105H	.	.	.
GBA2	57704	hgsc.bcm.edu	36	9	35729670	35729670	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020944	exon9	c.C1537A	p.L513I	.	.	.
GLIS3	169792	hgsc.bcm.edu	36	9	4107769	4107769	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152629	exon3	c.C1244T	p.T415M	.	.	.
ERMP1	79956	hgsc.bcm.edu	36	9	5777162	5777162	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024896	exon15	c.C2697T	p.Y899Y	.	.	.
ERMP1	79956	hgsc.bcm.edu	36	9	5815110	5815110	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024896	exon3	c.T750C	p.A250A	.	.	.
KANK1	23189	hgsc.bcm.edu	36	9	734505	734505	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153186	exon10	c.G3438A	p.A1146A	.	.	.
C9orf95	54981	hgsc.bcm.edu	36	9	76873793	76873793	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017881	exon7	c.C435T	p.G145G	.	.	.
PSAT1	29968	hgsc.bcm.edu	36	9	80109518	80109518	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_058179	exon4	c.G239A	p.C80Y	.	.	.
HNRNPK	3190	hgsc.bcm.edu	36	9	85779320	85779320	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002140	exon7	c.T262A	p.L88M	.	.	.
AGTPBP1	23287	hgsc.bcm.edu	36	9	87397309	87397309	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015239	exon19	c.T2434C	p.Y812H	.	.	.
CTSL1	1514	hgsc.bcm.edu	36	9	89532400	89532400	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145918	exon2	c.T62G	p.F21C	.	.	.
CKS2	1164	hgsc.bcm.edu	36	9	91119965	91119965	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001827	exon2	c.A120C	p.E40D	.	.	.
SEMA4D	10507	hgsc.bcm.edu	36	9	91183597	91183597	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006378	exon18	c.C2431A	p.L811M	.	.	.
PHF2	5253	hgsc.bcm.edu	36	9	95438610	95438610	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005392	exon3	c.G281A	p.R94Q	.	.	.
ZNF510	22869	hgsc.bcm.edu	36	9	98561750	98561750	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014930	exon6	c.C1183T	p.R395X	.	.	.
C9orf84	158401	hgsc.bcm.edu	36	9	113494058	113494061	+	Frame_Shift_Del	DEL	TTTA	TTTA	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	TTTA	TTTA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173521	exon25	c.3825_3828del	p.1275_1276del	.	.	.
CAMSAP1	157922	hgsc.bcm.edu	36	9	137850244	137850246	+	In_Frame_Del	DEL	CTC	CTC	-	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	CTC	CTC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015447	exon13	c.3997_3999del	p.1333_1333del	.	.	.
MYO16	23026	hgsc.bcm.edu	36	13	108338826	108338826	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001198950	exon14	c.T1659G	p.H553Q	.	.	.
C13orf16	121793	hgsc.bcm.edu	36	13	110778535	110778535	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152324	exon3	c.T63C	p.C21C	.	.	.
ATP11A	23250	hgsc.bcm.edu	36	13	112544638	112544638	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015205	exon17	c.C1753T	p.R585X	.	.	.
ADPRHL1	113622	hgsc.bcm.edu	36	13	113146787	113146787	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_199162	exon2	c.G87A	p.K29K	.	.	.
ATP12A	479	hgsc.bcm.edu	36	13	24179556	24179556	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001185085	exon17	c.C2496G	p.D832E	.	.	.
RASL11A	387496	hgsc.bcm.edu	36	13	26745358	26745358	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_206827	exon4	c.G456C	p.L152F	.	.	.
FLT3	2322	hgsc.bcm.edu	36	13	27529560	27529560	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004119	exon4	c.C408T	p.T136T	.	.	.
RXFP2	122042	hgsc.bcm.edu	36	13	31233913	31233913	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001166058	exon3	c.C294T	p.N98N	.	.	.
FREM2	341640	hgsc.bcm.edu	36	13	38164418	38164418	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207361	exon1	c.T4937C	p.I1646T	.	.	.
FREM2	341640	hgsc.bcm.edu	36	13	38330170	38330170	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207361	exon13	c.A7215C	p.T2405T	.	.	.
FREM2	341640	hgsc.bcm.edu	36	13	38351005	38351005	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207361	exon23	c.G8897T	p.G2966V	.	.	.
STOML3	161003	hgsc.bcm.edu	36	13	38444660	38444660	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001144033	exon5	c.C274G	p.P92A	.	.	.
C13orf23	80209	hgsc.bcm.edu	36	13	38485764	38485764	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_170719	exon10	c.C1559T	p.P520L	.	.	.
NARG1L	79612	hgsc.bcm.edu	36	13	40792869	40792869	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024561	exon4	c.G311A	p.R104Q	.	.	.
ZC3H13	23091	hgsc.bcm.edu	36	13	45475303	45475303	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015070	exon8	c.C916T	p.R306X	.	.	.
RCBTB2	1102	hgsc.bcm.edu	36	13	47982817	47982817	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001268	exon10	c.G875A	p.G292D	.	.	.
CYSLTR2	57105	hgsc.bcm.edu	36	13	48179361	48179361	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020377	exon1	c.G407A	p.R136H	.	.	.
MYCBP2	23077	hgsc.bcm.edu	36	13	76648755	76648755	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015057	exon36	c.G5350A	p.A1784T	.	.	.
POU4F1	5457	hgsc.bcm.edu	36	13	78073576	78073576	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006237	exon2	c.G1235A	p.R412Q	.	.	.
GPC6	10082	hgsc.bcm.edu	36	13	93736704	93736704	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005708	exon5	c.G978A	p.M326I	.	.	.
DCT	1638	hgsc.bcm.edu	36	13	93910367	93910367	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001922	exon6	c.C1158T	p.A386A	.	.	.
IPO5	3843	hgsc.bcm.edu	36	13	97453255	97453255	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002271	exon16	c.A1514G	p.K505R	.	.	.
RNF113B	140432	hgsc.bcm.edu	36	13	97626902	97626902	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178861	exon1	c.A590T	p.K197M	.	.	.
HPS1	3257	hgsc.bcm.edu	36	10	100180989	100180989	+	Missense_Mutation	SNP	G	G	A	rs1801286	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182639	exon7	c.C557T	p.A186V	.	.	.
DNMBP	23268	hgsc.bcm.edu	36	10	101638634	101638634	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015221	exon12	c.C3223A	p.R1075R	.	.	.
DNMBP	23268	hgsc.bcm.edu	36	10	101658820	101658820	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015221	exon5	c.G2334A	p.E778E	.	.	.
PPRC1	23082	hgsc.bcm.edu	36	10	103891591	103891591	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015062	exon5	c.G3336C	p.K1112N	.	.	.
GBF1	8729	hgsc.bcm.edu	36	10	104109123	104109123	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199378	exon11	c.A1121G	p.H374R	.	.	.
TMEM180	79847	hgsc.bcm.edu	36	10	104223382	104223382	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024789	exon8	c.G991A	p.V331I	.	.	.
SORCS3	22986	hgsc.bcm.edu	36	10	106897388	106897388	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014978	exon9	c.C1326T	p.D442D	.	.	.
MXI1	4601	hgsc.bcm.edu	36	10	112029779	112029779	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_130439	exon5	c.C670T	p.R224X	.	.	.
CASP7	840	hgsc.bcm.edu	36	10	115475239	115475239	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033339	exon6	c.G505A	p.D169N	.	.	.
PDZD8	118987	hgsc.bcm.edu	36	10	119034144	119034144	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173791	exon5	c.G2090T	p.R697I	.	.	.
C10orf84	63877	hgsc.bcm.edu	36	10	120085716	120085716	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001134672	exon2	c.T202C	p.C68R	.	.	.
TIAL1	7073	hgsc.bcm.edu	36	10	121328306	121328306	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001033925	exon7	c.G529A	p.G177S	.	.	.
TACC2	10579	hgsc.bcm.edu	36	10	123893099	123893099	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_206862	exon7	c.G5722A	p.A1908T	.	.	.
C10orf120	399814	hgsc.bcm.edu	36	10	124447750	124447750	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001010912	exon3	c.A497G	p.K166R	.	.	.
C10orf137	26098	hgsc.bcm.edu	36	10	127404297	127404297	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015608	exon6	c.C692T	p.S231L	.	.	.
TUBGCP2	10844	hgsc.bcm.edu	36	10	134948632	134948632	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006659	exon13	c.C1971T	p.S657S	.	.	.
CYP2E1	1571	hgsc.bcm.edu	36	10	135195117	135195117	+	Missense_Mutation	SNP	C	C	T	rs60719153	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000773	exon3	c.C376T	p.R126W	.	.	.
NEBL	10529	hgsc.bcm.edu	36	10	21187179	21187179	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006393	exon9	c.G899A	p.S300N	.	.	.
ARHGAP21	57584	hgsc.bcm.edu	36	10	24948497	24948497	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020824	exon9	c.G2333T	p.R778L	.	.	.
ARMC4	55130	hgsc.bcm.edu	36	10	28269737	28269737	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018076	exon13	c.G1747A	p.A583T	.	.	.
ARMC4	55130	hgsc.bcm.edu	36	10	28273294	28273294	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018076	exon12	c.G1606A	p.G536S	.	.	.
ARMC4	55130	hgsc.bcm.edu	36	10	28273316	28273316	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018076	exon12	c.A1584G	p.R528R	.	.	.
ZEB1	6935	hgsc.bcm.edu	36	10	31843622	31843622	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001174093	exon5	c.A710G	p.E237G	.	.	.
ZEB1	6935	hgsc.bcm.edu	36	10	31855828	31855828	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001174093	exon8	c.G2945T	p.G982V	.	.	.
ARHGAP12	94134	hgsc.bcm.edu	36	10	32141682	32141682	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018287	exon15	c.G1910A	p.R637H	.	.	.
ARHGAP12	94134	hgsc.bcm.edu	36	10	32172474	32172474	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018287	exon7	c.G1217A	p.S406N	.	.	.
PARD3	56288	hgsc.bcm.edu	36	10	34440360	34440360	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001184787	exon24	c.G3703T	p.G1235X	.	.	.
ZNF25	219749	hgsc.bcm.edu	36	10	38282038	38282038	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145011	exon6	c.G394A	p.A132T	.	.	.
ERCC6	2074	hgsc.bcm.edu	36	10	50336899	50336899	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000124	exon21	c.G4450A	p.G1484R	.	.	.
PCDH15	65217	hgsc.bcm.edu	36	10	55252621	55252621	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142767	exon31	c.C4751A	p.P1584Q	.	.	.
FBXO18	84893	hgsc.bcm.edu	36	10	5999457	5999457	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032807	exon12	c.G2010A	p.A670A	.	.	.
ANK3	288	hgsc.bcm.edu	36	10	61500956	61500956	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020987	exon37	c.G9689A	p.R3230H	.	.	.
ANK3	288	hgsc.bcm.edu	36	10	61629956	61629956	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020987	exon13	c.C1428T	p.S476S	.	.	.
SIRT1	23411	hgsc.bcm.edu	36	10	69339130	69339130	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142498	exon6	c.T397C	p.Y133H	.	.	.
SLC25A16	8034	hgsc.bcm.edu	36	10	69918353	69918353	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152707	exon7	c.G650A	p.G217E	.	.	.
TET1	80312	hgsc.bcm.edu	36	10	70120816	70120816	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030625	exon12	c.C5650T	p.P1884S	.	.	.
CCAR1	55749	hgsc.bcm.edu	36	10	70176980	70176980	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018237	exon7	c.A575G	p.Y192C	.	.	.
HKDC1	80201	hgsc.bcm.edu	36	10	70691005	70691005	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025130	exon16	c.G2321A	p.R774H	.	.	.
NODAL	4838	hgsc.bcm.edu	36	10	71865556	71865556	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018055	exon2	c.G383A	p.C128Y	.	.	.
SLC29A3	55315	hgsc.bcm.edu	36	10	72791842	72791842	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018344	exon6	c.C899A	p.P300H	.	.	.
CCDC109A	90550	hgsc.bcm.edu	36	10	74301310	74301310	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138357	exon6	c.T827C	p.M276T	.	.	.
TSPAN14	81619	hgsc.bcm.edu	36	10	82259165	82259165	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030927	exon5	c.C408T	p.D136D	.	.	.
BMPR1A	657	hgsc.bcm.edu	36	10	88673337	88673337	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004329	exon13	c.C1480T	p.R494X	.	.	.
ACTA2	59	hgsc.bcm.edu	36	10	90689415	90689415	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001141945	exon7	c.G637T	p.D213Y	.	.	.
TNKS2	80351	hgsc.bcm.edu	36	10	93612707	93612707	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025235	exon27	c.A3472G	p.M1158V	.	.	.
SORBS1	10580	hgsc.bcm.edu	36	10	97164437	97164437	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001034954	exon7	c.C614A	p.P205Q	.	.	.
TLL2	7093	hgsc.bcm.edu	36	10	98119919	98119919	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012465	exon20	c.C2806A	p.R936R	.	.	.
SLCO4C1	353189	hgsc.bcm.edu	36	5	101602904	101602904	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_180991	exon12	c.C1964T	p.A655V	.	.	.
PJA2	9867	hgsc.bcm.edu	36	5	108742156	108742156	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014819	exon4	c.G931A	p.E311K	.	.	.
CTNND2	1501	hgsc.bcm.edu	36	5	11041274	11041274	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001332	exon20	c.A3292G	p.T1098A	.	.	.
WDR36	134430	hgsc.bcm.edu	36	5	110476672	110476672	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139281	exon16	c.G1885A	p.A629T	.	.	.
APC	324	hgsc.bcm.edu	36	5	112192485	112192485	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon12	c.C1606T	p.R536X	APC,ovary,NS,Substitution - Nonsense,0	.	.
APC	324	hgsc.bcm.edu	36	5	112202952	112202952	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon14	c.T3708G	p.I1236M	APC,large_intestine,rectum,Substitution - Missense,+2	.	.
APC	324	hgsc.bcm.edu	36	5	112203635	112203635	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon14	c.T4391C	p.L1464P	APC,large_intestine,appendix,Substitution - Missense,+1	.	.
SNCAIP	9627	hgsc.bcm.edu	36	5	121786733	121786733	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005460	exon4	c.T402C	p.S134S	.	.	.
ADAMTS19	171019	hgsc.bcm.edu	36	5	128984327	128984327	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133638	exon9	c.G1578T	p.K526N	.	.	.
SLC6A18	348932	hgsc.bcm.edu	36	5	1297437	1297437	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182632	exon10	c.T1445C	p.M482T	.	.	.
ACSL6	23305	hgsc.bcm.edu	36	5	131354448	131354448	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001009185	exon3	c.T382C	p.S128P	.	.	.
SPOCK1	6695	hgsc.bcm.edu	36	5	136862046	136862046	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004598	exon2	c.A101G	p.N34S	.	.	.
SLC23A1	9963	hgsc.bcm.edu	36	5	138743971	138743971	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005847	exon6	c.G472A	p.G158S	.	.	.
SLC35A4	113829	hgsc.bcm.edu	36	5	139927230	139927230	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080670	exon3	c.G292A	p.A98T	.	.	.
PCDHA10	56139	hgsc.bcm.edu	36	5	140216983	140216983	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031860	exon1	c.C1166T	p.T389M	.	.	.
PCDHA10	56139	hgsc.bcm.edu	36	5	140217010	140217010	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031860	exon1	c.C1193T	p.S398F	.	.	.
PCDHAC1	56135	hgsc.bcm.edu	36	5	140287883	140287883	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031882	exon1	c.A1222C	p.I408L	.	.	.
PCDHAC1	56135	hgsc.bcm.edu	36	5	140288218	140288218	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031882	exon1	c.G1557T	p.R519S	.	.	.
PCDHGA2	56113	hgsc.bcm.edu	36	5	140699866	140699866	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032009	exon1	c.A1144G	p.T382A	.	.	.
PCDHGC3	5098	hgsc.bcm.edu	36	5	140835891	140835891	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032402	exon1	c.C24T	p.S8S	.	.	.
PCDHGC3	5098	hgsc.bcm.edu	36	5	140836067	140836067	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032402	exon1	c.G200T	p.R67L	.	.	.
PCDHGC3	5098	hgsc.bcm.edu	36	5	140836511	140836511	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032402	exon1	c.C644T	p.T215M	.	.	.
AFAP1L1	134265	hgsc.bcm.edu	36	5	148659316	148659316	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152406	exon2	c.A68T	p.H23L	.	.	.
AFAP1L1	134265	hgsc.bcm.edu	36	5	148666099	148666099	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152406	exon6	c.C474T	p.Y158Y	.	.	.
PCYOX1L	78991	hgsc.bcm.edu	36	5	148727187	148727187	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024028	exon5	c.G754A	p.G252S	.	.	.
SLC6A3	6531	hgsc.bcm.edu	36	5	1496058	1496058	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001044	exon2	c.G255T	p.R85R	.	.	.
MYOZ3	91977	hgsc.bcm.edu	36	5	150030365	150030365	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001122853	exon3	c.C188A	p.T63N	.	.	.
FAT2	2196	hgsc.bcm.edu	36	5	150872022	150872022	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001447	exon20	c.C11802T	p.G3934G	.	.	.
FAM71B	153745	hgsc.bcm.edu	36	5	156522630	156522630	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_130899	exon2	c.G1224C	p.M408I	.	.	.
C5orf40	408263	hgsc.bcm.edu	36	5	156702598	156702598	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001001343	exon2	c.G525A	p.L175L	.	.	.
SOX30	11063	hgsc.bcm.edu	36	5	156997829	156997829	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178424	exon4	c.T1867C	p.Y623H	.	.	.
EBF1	1879	hgsc.bcm.edu	36	5	158456615	158456615	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024007	exon2	c.G236A	p.G79D	.	.	.
IL12B	3593	hgsc.bcm.edu	36	5	158682835	158682835	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002187	exon3	c.G169C	p.G57R	.	.	.
GABRA6	2559	hgsc.bcm.edu	36	5	161061303	161061303	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000811	exon9	c.C1308T	p.Y436Y	.	.	.
DOCK2	1794	hgsc.bcm.edu	36	5	169409964	169409964	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004946	exon41	c.A4198C	p.N1400H	.	.	.
FOXI1	2299	hgsc.bcm.edu	36	5	169468053	169468053	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144769	exon2	c.G712A	p.G238S	.	.	.
DUSP1	1843	hgsc.bcm.edu	36	5	172128427	172128427	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004417	exon4	c.A1048T	p.T350S	.	.	.
ADAMTS2	9509	hgsc.bcm.edu	36	5	178487589	178487589	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014244	exon17	c.C2594T	p.P865L	.	.	.
MAML1	9794	hgsc.bcm.edu	36	5	179126229	179126229	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014757	exon2	c.G1612A	p.A538T	.	.	.
CNOT6	57472	hgsc.bcm.edu	36	5	179933706	179933706	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015455	exon12	c.C1574T	p.P525L	.	.	.
PDZD2	23037	hgsc.bcm.edu	36	5	32123335	32123335	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178140	exon19	c.G4024T	p.G1342X	.	.	.
ZFR	51663	hgsc.bcm.edu	36	5	32426300	32426300	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016107	exon12	c.A1980G	p.R660R	.	.	.
ADAMTS12	81792	hgsc.bcm.edu	36	5	33612844	33612844	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030955	exon19	c.A3044C	p.N1015T	.	.	.
SLC45A2	51151	hgsc.bcm.edu	36	5	34020131	34020131	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001012509	exon1	c.C315T	p.Y105Y	.	.	.
RAI14	26064	hgsc.bcm.edu	36	5	34793458	34793458	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145522	exon3	c.C165T	p.T55T	.	.	.
SLC1A3	6507	hgsc.bcm.edu	36	5	36721994	36721994	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001166695	exon8	c.C1360T	p.R454X	.	.	.
LIFR	3977	hgsc.bcm.edu	36	5	38517719	38517719	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127671	exon20	c.A3029T	p.N1010I	.	.	.
LIFR	3977	hgsc.bcm.edu	36	5	38559322	38559322	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127671	exon5	c.G517A	p.E173K	.	.	.
HSPB3	8988	hgsc.bcm.edu	36	5	53787481	53787481	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006308	exon1	c.T105C	p.Y35Y	.	.	.
GZMA	3001	hgsc.bcm.edu	36	5	54439779	54439779	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006144	exon4	c.A427G	p.K143E	.	.	.
SKIV2L2	23517	hgsc.bcm.edu	36	5	54675023	54675023	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015360	exon8	c.T889C	p.C297R	.	.	.
ACTBL2	345651	hgsc.bcm.edu	36	5	56813699	56813699	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001017992	exon1	c.G593A	p.G198D	.	.	.
NSUN2	54888	hgsc.bcm.edu	36	5	6653064	6653064	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017755	exon19	c.C2279T	p.P760L	.	.	.
MCCC2	64087	hgsc.bcm.edu	36	5	70934168	70934168	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022132	exon5	c.C463T	p.R155W	.	.	.
MAP1B	4131	hgsc.bcm.edu	36	5	71529260	71529260	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005909	exon5	c.A4322G	p.Q1441R	.	.	.
ZNF366	167465	hgsc.bcm.edu	36	5	71792758	71792758	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152625	exon2	c.G322A	p.G108S	.	.	.
ADCY2	108	hgsc.bcm.edu	36	5	7679425	7679425	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020546	exon4	c.A716G	p.Q239R	.	.	.
BRD9	65980	hgsc.bcm.edu	36	5	929273	929273	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_023924	exon12	c.C1326T	p.D442D	.	.	.
NR2F1	7025	hgsc.bcm.edu	36	5	92946753	92946753	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005654	exon1	c.G268A	p.G90R	.	.	.
LNPEP	4012	hgsc.bcm.edu	36	5	96388166	96388166	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005575	exon16	c.A2813G	p.H938R	.	.	.
C4orf50	389197	hgsc.bcm.edu	36	4	6012039	6012039	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00J-01	TCGA-AA-A00J-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	.	.	.	.	.	.	.
