Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
PCOLCE	5118	hgsc.bcm.edu	36	7	100043349	100043350	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002593	exon8	c.1166_1167insC	p.C389fs	.	.	.
MYT1	4661	hgsc.bcm.edu	36	20	62313126	62313127	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004535	exon8	c.1415_1416insC	p.I472fs	.	.	.
PI4KA	5297	hgsc.bcm.edu	36	22	19522923	19522924	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_058004	exon2	c.79_80insT	p.L27fs	.	.	.
TCF20	6942	hgsc.bcm.edu	36	22	40936518	40936519	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181492	exon1	c.4738_4739insA	p.Q1580fs	.	.	.
MTA1	9112	hgsc.bcm.edu	36	14	104982816	104982817	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004689	exon3	c.113_114insG	p.V38fs	.	.	.
C14orf106	55320	hgsc.bcm.edu	36	14	44765771	44765772	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018353	exon10	c.1765_1766insA	p.E589fs	.	.	.
NRBP2	340371	hgsc.bcm.edu	36	8	144992898	144992899	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178564	exon10	c.782_783insC	p.R261fs	.	.	.
FZD3	7976	hgsc.bcm.edu	36	8	28440855	28440856	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017412	exon5	c.659_660insT	p.T220fs	.	.	.
NPHS1	4868	hgsc.bcm.edu	36	19	41013625	41013626	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004646	exon28	c.3555_3556insC	p.P1185fs	.	.	.
NPR1	4881	hgsc.bcm.edu	36	1	151925798	151925799	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000906	exon11	c.1811_1812insC	p.D604fs	.	.	.
SHC1	6464	hgsc.bcm.edu	36	1	153209534	153209535	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130040	exon1	c.93_94insC	p.P31fs	.	.	.
RCOR3	55758	hgsc.bcm.edu	36	1	209518129	209518130	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001136224	exon6	c.564_565insA	p.W188fs	.	.	.
CACHD1	57685	hgsc.bcm.edu	36	1	64929704	64929705	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020925	exon27	c.3544_3545insC	p.T1182fs	.	.	.
H6PD	9563	hgsc.bcm.edu	36	1	9227837	9227838	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004285	exon2	c.257_258insC	p.C86fs	.	.	.
NOL7	51406	hgsc.bcm.edu	36	6	13728970	13728971	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016167	exon8	c.706_707insA	p.Q236fs	.	.	.
SNX14	57231	hgsc.bcm.edu	36	6	86331798	86331799	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153816	exon6	c.520_521insT	p.A174fs	.	.	.
CTSF	8722	hgsc.bcm.edu	36	11	66088153	66088154	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003793	exon12	c.1362_1363insG	p.G454fs	.	.	.
NCOR1	9611	hgsc.bcm.edu	36	17	15997428	15997429	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001190440	exon6	c.739_740insA	p.A247fs	.	.	.
SPNS3	201305	hgsc.bcm.edu	36	17	4298338	4298339	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182538	exon6	c.761_762insG	p.L254fs	.	.	.
LOC81691	81691	hgsc.bcm.edu	36	16	20765130	20765131	+	In_Frame_Ins	INS	-	-	CTG	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030941	exon19	c.2211_2212insCTG	p.T737delinsTL	.	.	.
N-PAC	84656	hgsc.bcm.edu	36	16	4802229	4802230	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032569	exon13	c.1141_1142insG	p.R381fs	.	.	.
PARP15	165631	hgsc.bcm.edu	36	3	123828373	123828374	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152615	exon5	c.539_540insA	p.G180fs	.	.	.
HPS3	84343	hgsc.bcm.edu	36	3	150345849	150345850	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032383	exon5	c.989_990insA	p.G330fs	.	.	.
TGFBR2	7048	hgsc.bcm.edu	36	3	30666875	30666876	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001024847	exon4	c.448_449insA	p.E150fs	.	.	.
OR5H1	26341	hgsc.bcm.edu	36	3	99335145	99335146	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005338	exon1	c.914_915insA	p.L305fs	.	.	.
TAS2R50	259296	hgsc.bcm.edu	36	12	11030698	11030699	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_176890	exon1	c.29_30insT	p.S10fs	.	.	.
WBP11	51729	hgsc.bcm.edu	36	12	14831632	14831633	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016312	exon12	c.1560_1561insC	p.P520fs	.	.	.
AAAS	8086	hgsc.bcm.edu	36	12	51988356	51988357	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015665	exon13	c.1226_1227insG	p.E409fs	.	.	.
ELK3	2004	hgsc.bcm.edu	36	12	95141625	95141626	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005230	exon2	c.150_151insA	p.N50fs	.	.	.
REPS2	9185	hgsc.bcm.edu	36	X	17075525	17075526	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001080975	exon18	c.1980_1981insC	p.X660delinsX	.	.	.
FAM114A1	92689	hgsc.bcm.edu	36	4	38569807	38569808	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138389	exon4	c.397_398insG	p.W133fs	.	.	.
FAM175A	84142	hgsc.bcm.edu	36	4	84607702	84607703	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139076	exon7	c.610_611insT	p.E204_E205delinsX	.	.	.
WDSUB1	151525	hgsc.bcm.edu	36	2	159813167	159813168	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001128213	exon10	c.1235_1236insA	p.I412fs	.	.	.
LRP2	4036	hgsc.bcm.edu	36	2	169845128	169845129	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004525	exon11	c.1319_1320insT	p.W440fs	.	.	.
COL3A1	1281	hgsc.bcm.edu	36	2	189579346	189579347	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000090	exon43	c.3124_3125insC	p.A1042fs	.	.	.
RNF25	64320	hgsc.bcm.edu	36	2	219237757	219237758	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022453	exon9	c.750_751insG	p.G250fs	.	.	.
NUP188	23511	hgsc.bcm.edu	36	9	130785454	130785455	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015354	exon18	c.1858_1859insT	p.V620fs	.	.	.
BAG1	573	hgsc.bcm.edu	36	9	33245869	33245870	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001172415	exon6	c.597_598insA	p.K199fs	.	.	.
IARS	3376	hgsc.bcm.edu	36	9	94062323	94062324	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002161	exon18	c.1802_1803insA	p.M601fs	.	.	.
ZC3H13	23091	hgsc.bcm.edu	36	13	45441661	45441662	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015070	exon14	c.3019_3020insA	p.R1007fs	.	.	.
RNF219	79596	hgsc.bcm.edu	36	13	78114293	78114294	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024546	exon3	c.265_266insG	p.K89fs	.	.	.
TACC2	10579	hgsc.bcm.edu	36	10	123961016	123961017	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_206860	exon3	c.1320_1321insC	p.L440fs	.	.	.
CUL2	8453	hgsc.bcm.edu	36	10	35391921	35391922	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001198777	exon3	c.195_196insT	p.L65fs	.	.	.
PDZD2	23037	hgsc.bcm.edu	36	5	31835297	31835298	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178140	exon1	c.185_186insC	p.S62fs	.	.	.
DNAJC21	134218	hgsc.bcm.edu	36	5	34981629	34981630	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_194283	exon9	c.1149_1150insA	p.S383fs	.	.	.
SRRT	51593	hgsc.bcm.edu	36	7	100317634	100317634	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001128852	exon5	c.C423G	p.D141E	.	.	.
MOGAT3	346606	hgsc.bcm.edu	36	7	100625996	100625996	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178176	exon7	c.A977G	p.H326R	.	.	.
PSMC2	5701	hgsc.bcm.edu	36	7	102795647	102795647	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002803	exon12	c.T1212C	p.A404A	.	.	.
SLC26A5	375611	hgsc.bcm.edu	36	7	102820687	102820687	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_206884	exon10	c.C1034T	p.A345V	.	.	.
RELN	5649	hgsc.bcm.edu	36	7	103125674	103125674	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005045	exon10	c.A1005G	p.V335V	.	.	.
PIK3CG	5294	hgsc.bcm.edu	36	7	106296091	106296091	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002649	exon2	c.C849T	p.G283G	.	.	.
PPP1R3A	5506	hgsc.bcm.edu	36	7	113305379	113305379	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002711	exon4	c.T3004C	p.Y1002H	.	.	.
PTPRZ1	5803	hgsc.bcm.edu	36	7	121466773	121466773	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002851	exon20	c.T5532C	p.D1844D	.	.	.
GPR37	2861	hgsc.bcm.edu	36	7	124191653	124191653	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005302	exon1	c.C614T	p.A205V	.	.	.
SND1	27044	hgsc.bcm.edu	36	7	127234792	127234792	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014390	exon11	c.C1171T	p.R391C	.	.	.
PODXL	5420	hgsc.bcm.edu	36	7	130844868	130844868	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001018111	exon4	c.G819A	p.S273S	.	.	.
TMEM140	55281	hgsc.bcm.edu	36	7	134500095	134500095	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018295	exon2	c.C362A	p.A121D	.	.	.
STRA8	346673	hgsc.bcm.edu	36	7	134578123	134578123	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182489	exon3	c.C309T	p.T103T	.	.	.
PDIA4	9601	hgsc.bcm.edu	36	7	148333931	148333931	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004911	exon8	c.T1279C	p.Y427H	.	.	.
GIMAP8	155038	hgsc.bcm.edu	36	7	149794785	149794785	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_175571	exon2	c.A66C	p.G22G	.	.	.
MEOX2	4223	hgsc.bcm.edu	36	7	15618546	15618546	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005924	exon3	c.G906A	p.A302A	.	.	.
FAM62B	57488	hgsc.bcm.edu	36	7	158283431	158283431	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020728	exon3	c.G614A	p.S205N	.	.	.
MACC1	346389	hgsc.bcm.edu	36	7	20165952	20165952	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182762	exon5	c.G557A	p.R186H	.	.	.
SP4	6671	hgsc.bcm.edu	36	7	21436936	21436936	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003112	exon3	c.C1628A	p.A543D	.	.	.
FAM126A	84668	hgsc.bcm.edu	36	7	22951879	22951879	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032581	exon11	c.G1420A	p.A474T	.	.	.
NPVF	64111	hgsc.bcm.edu	36	7	25233111	25233111	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022150	exon2	c.A198G	p.G66G	.	.	.
C7orf27	221927	hgsc.bcm.edu	36	7	2560577	2560577	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152743	exon2	c.C15T	p.C5C	.	.	.
FKBP9	11328	hgsc.bcm.edu	36	7	33006361	33006361	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007270	exon8	c.A1336G	p.I446V	.	.	.
SDK1	221935	hgsc.bcm.edu	36	7	4083269	4083269	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152744	exon21	c.A3124G	p.T1042A	.	.	.
GLI3	2737	hgsc.bcm.edu	36	7	41983828	41983828	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000168	exon12	c.G1666A	p.A556T	.	.	.
PKD1L1	168507	hgsc.bcm.edu	36	7	47943076	47943076	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138295	exon4	c.T290G	p.I97S	.	.	.
KCTD7	154881	hgsc.bcm.edu	36	7	65741625	65741625	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001167961	exon4	c.A841G	p.I281V	.	.	.
CACNA2D1	781	hgsc.bcm.edu	36	7	81474960	81474960	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000722	exon16	c.G1411A	p.G471S	.	.	.
SEMA3A	10371	hgsc.bcm.edu	36	7	83430577	83430577	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006080	exon16	c.T1740C	p.P580P	.	.	.
ABCB4	5244	hgsc.bcm.edu	36	7	86917291	86917291	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018849	exon8	c.C762T	p.A254A	.	.	.
TAC1	6863	hgsc.bcm.edu	36	7	97201525	97201525	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013996	exon4	c.T250C	p.L84L	.	.	.
MCM7	4176	hgsc.bcm.edu	36	7	99533250	99533250	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182776	exon8	c.A512G	p.H171R	.	.	.
ESF1	51575	hgsc.bcm.edu	36	20	13643767	13643767	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016649	exon14	c.G2310C	p.L770F	.	.	.
SEC23B	10483	hgsc.bcm.edu	36	20	18453626	18453626	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032986	exon6	c.A651G	p.R217R	.	.	.
XRN2	22803	hgsc.bcm.edu	36	20	21275106	21275106	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012255	exon17	c.A1583G	p.D528G	.	.	.
NAPB	63908	hgsc.bcm.edu	36	20	23309924	23309924	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022080	exon8	c.T592C	p.L198L	.	.	.
CST4	1472	hgsc.bcm.edu	36	20	23617489	23617489	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001899	exon1	c.A118G	p.N40D	.	.	.
ABHD12	26090	hgsc.bcm.edu	36	20	25237111	25237111	+	Missense_Mutation	SNP	G	G	A	rs41306784	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001042472	exon8	c.C769T	p.R257W	.	.	.
BCL2L1	598	hgsc.bcm.edu	36	20	29773299	29773299	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138578	exon2	c.T384C	p.N128N	.	.	.
HCK	3055	hgsc.bcm.edu	36	20	30150502	30150502	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001172129	exon12	c.A1218G	p.E406E	.	.	.
NFS1	9054	hgsc.bcm.edu	36	20	33726382	33726382	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021100	exon8	c.A947G	p.E316G	.	.	.
ATRN	8455	hgsc.bcm.edu	36	20	3491926	3491926	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139322	exon10	c.G1702A	p.V568M	.	.	.
CTNNBL1	56259	hgsc.bcm.edu	36	20	35819383	35819383	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030877	exon5	c.A475T	p.I159L	.	.	.
CTNNBL1	56259	hgsc.bcm.edu	36	20	35841119	35841119	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030877	exon10	c.C999T	p.G333G	.	.	.
KIAA0406	9675	hgsc.bcm.edu	36	20	36074983	36074983	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014657	exon3	c.T650C	p.L217P	.	.	.
PLCG1	5335	hgsc.bcm.edu	36	20	39226040	39226040	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002660	exon11	c.T1076C	p.M359T	.	.	.
CHD6	84181	hgsc.bcm.edu	36	20	39478687	39478687	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032221	exon33	c.A6441G	p.E2147E	.	.	.
CHD6	84181	hgsc.bcm.edu	36	20	39482763	39482763	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032221	exon31	c.G5926A	p.A1976T	.	.	.
UBE2C	11065	hgsc.bcm.edu	36	20	43877951	43877951	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181801	exon5	c.A356C	p.N119T	.	.	.
DDX27	55661	hgsc.bcm.edu	36	20	47271491	47271491	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017895	exon2	c.G282A	p.T94T	.	.	.
TMEM189-UBE2V1	387522	hgsc.bcm.edu	36	20	48177966	48177966	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_199129	exon5	c.G644A	p.R215H	.	.	.
PTPN1	5770	hgsc.bcm.edu	36	20	48560479	48560479	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002827	exon1	c.T8C	p.M3T	.	.	.
TH1L	51497	hgsc.bcm.edu	36	20	57003115	57003115	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198976	exon15	c.A1762G	p.M588V	.	.	.
DIDO1	11083	hgsc.bcm.edu	36	20	60993859	60993859	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001193370	exon14	c.A3270C	p.T1090T	.	.	.
C20orf54	113278	hgsc.bcm.edu	36	20	693974	693974	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033409	exon2	c.G445A	p.G149S	.	.	.
WDR20	91833	hgsc.bcm.edu	36	14	101676068	101676068	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181291	exon1	c.A55G	p.T19A	.	.	.
RNASE2	6036	hgsc.bcm.edu	36	14	20494233	20494233	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002934	exon2	c.G463T	p.V155F	.	.	.
SLC39A2	29986	hgsc.bcm.edu	36	14	20539408	20539408	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014579	exon4	c.C760T	p.R254W	.	.	.
NFKBIA	4792	hgsc.bcm.edu	36	14	34940976	34940976	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020529	exon6	c.G948A	p.T316T	.	.	.
FOXA1	3169	hgsc.bcm.edu	36	14	37131030	37131030	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004496	exon2	c.A710T	p.K237M	.	.	.
FANCM	57697	hgsc.bcm.edu	36	14	44687873	44687873	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020937	exon4	c.T843G	p.S281S	.	.	.
PPM1A	5494	hgsc.bcm.edu	36	14	59826320	59826320	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021003	exon4	c.T996C	p.H332H	.	.	.
PPP2R5E	5529	hgsc.bcm.edu	36	14	62958476	62958476	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006246	exon4	c.G444A	p.W148X	.	.	.
ZBTB1	22890	hgsc.bcm.edu	36	14	64058142	64058142	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014950	exon2	c.A167G	p.H56R	.	.	.
GPHN	10243	hgsc.bcm.edu	36	14	66648352	66648352	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001024218	exon14	c.C1336T	p.R446X	.	.	.
RDH12	145226	hgsc.bcm.edu	36	14	67263462	67263462	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152443	exon7	c.C460A	p.L154I	.	.	.
WDR22	8816	hgsc.bcm.edu	36	14	68590545	68590545	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003861	exon9	c.A2611G	p.N871D	.	.	.
PCNX	22990	hgsc.bcm.edu	36	14	70513731	70513731	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014982	exon6	c.T924C	p.R308R	.	.	.
SIPA1L1	26037	hgsc.bcm.edu	36	14	71260279	71260279	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015556	exon16	c.C4434T	p.G1478G	.	.	.
C14orf133	63894	hgsc.bcm.edu	36	14	76972011	76972011	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022067	exon14	c.C841T	p.P281S	.	.	.
ADCK1	57143	hgsc.bcm.edu	36	14	77461861	77461861	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142545	exon8	c.T806C	p.M269T	.	.	.
TSHR	7253	hgsc.bcm.edu	36	14	80679672	80679672	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000369	exon10	c.A1517G	p.E506G	.	.	.
KCNK10	54207	hgsc.bcm.edu	36	14	87724105	87724105	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138317	exon6	c.G970A	p.G324R	.	.	.
RPS6KA5	9252	hgsc.bcm.edu	36	14	90411394	90411394	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004755	exon15	c.G1900A	p.A634T	.	.	.
BTBD7	55727	hgsc.bcm.edu	36	14	92778479	92778479	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001002860	exon11	c.G3292T	p.G1098C	.	.	.
ASB2	51676	hgsc.bcm.edu	36	14	93470803	93470803	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016150	exon8	c.G1716A	p.P572P	.	.	.
ASB2	51676	hgsc.bcm.edu	36	14	93483508	93483508	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016150	exon5	c.A848G	p.N283S	.	.	.
WDR25	79446	hgsc.bcm.edu	36	14	99917055	99917055	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001161476	exon2	c.C41T	p.A14V	.	.	.
SIP1	8487	hgsc.bcm.edu	36	14	38667283	38667284	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	AG	AG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001009183	exon7	c.613_614del	p.205_205del	.	.	.
IL17RA	23765	hgsc.bcm.edu	36	22	15959732	15959732	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014339	exon4	c.C378T	p.C126C	.	.	.
SCARF2	91179	hgsc.bcm.edu	36	22	19111810	19111810	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182895	exon10	c.T1568C	p.L523P	.	.	.
PI4KA	5297	hgsc.bcm.edu	36	22	19488652	19488652	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_058004	exon12	c.T1223C	p.L408P	.	.	.
PIWIL3	440822	hgsc.bcm.edu	36	22	23453935	23453935	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001008496	exon16	c.C2018T	p.T673I	.	.	.
SEZ6L	23544	hgsc.bcm.edu	36	22	25019066	25019066	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001184776	exon2	c.C789A	p.T263T	.	.	.
CHEK2	11200	hgsc.bcm.edu	36	22	27451245	27451245	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145862	exon3	c.T430C	p.F144L	.	.	.
AP1B1	162	hgsc.bcm.edu	36	22	28066663	28066663	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001166019	exon14	c.C1980T	p.G660G	.	.	.
RBM9	23543	hgsc.bcm.edu	36	22	34507656	34507656	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001082579	exon4	c.A543C	p.K181N	.	.	.
CSF2RB	1439	hgsc.bcm.edu	36	22	35648225	35648225	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000395	exon2	c.G30T	p.M10I	.	.	.
C22orf33	339669	hgsc.bcm.edu	36	22	35728026	35728026	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178552	exon3	c.C32T	p.A11V	.	.	.
DDX17	10521	hgsc.bcm.edu	36	22	37211966	37211966	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001098504	exon13	c.A2116G	p.T706A	.	.	.
CELSR1	9620	hgsc.bcm.edu	36	22	45168707	45168707	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014246	exon14	c.G5960T	p.C1987F	.	.	.
DNMT1	1786	hgsc.bcm.edu	36	19	10126627	10126627	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130823	exon20	c.A1598C	p.Q533P	.	.	.
CDC37	11140	hgsc.bcm.edu	36	19	10363251	10363251	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007065	exon8	c.C1113T	p.G371G	.	.	.
SLC44A2	57153	hgsc.bcm.edu	36	19	10603623	10603623	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020428	exon9	c.A706G	p.I236V	.	.	.
PRKCSH	5589	hgsc.bcm.edu	36	19	11409718	11409718	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002743	exon4	c.G218A	p.G73D	.	.	.
ZNF442	79973	hgsc.bcm.edu	36	19	12321610	12321610	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030824	exon6	c.G1789A	p.E597K	.	.	.
MORG1	84292	hgsc.bcm.edu	36	19	12645068	12645068	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001099737	exon10	c.C736T	p.R246C	.	.	.
C19orf43	79002	hgsc.bcm.edu	36	19	12703216	12703216	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024038	exon2	c.G365A	p.G122E	.	.	.
MUM1	84939	hgsc.bcm.edu	36	19	1317355	1317355	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032853	exon8	c.G1339T	p.G447X	.	.	.
GPSN2	9524	hgsc.bcm.edu	36	19	14534380	14534380	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138501	exon2	c.T59C	p.L20S	.	.	.
EMR2	30817	hgsc.bcm.edu	36	19	14728082	14728082	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152920	exon11	c.A1013G	p.D338G	.	.	.
OR7A5	26659	hgsc.bcm.edu	36	19	14799620	14799620	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017506	exon1	c.T434C	p.V145A	.	.	.
SLC1A6	6511	hgsc.bcm.edu	36	19	14934079	14934079	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005071	exon5	c.A670G	p.M224V	.	.	.
SFRS14	10147	hgsc.bcm.edu	36	19	18996475	18996475	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014884	exon3	c.C1682T	p.P561L	.	.	.
ARMC6	93436	hgsc.bcm.edu	36	19	19023517	19023517	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033415	exon4	c.A291G	p.K97K	.	.	.
ZNF556	80032	hgsc.bcm.edu	36	19	2827139	2827139	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024967	exon3	c.C179A	p.T60N	.	.	.
ZNF567	163081	hgsc.bcm.edu	36	19	41902938	41902938	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152603	exon4	c.A1379G	p.Y460C	.	.	.
SIPA1L3	23094	hgsc.bcm.edu	36	19	43271254	43271254	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015073	exon4	c.A1588G	p.I530V	.	.	.
UBXN6	80700	hgsc.bcm.edu	36	19	4396552	4396552	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025241	exon11	c.C1269A	p.A423A	.	.	.
DYRK1B	9149	hgsc.bcm.edu	36	19	45012928	45012928	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006483	exon4	c.T299C	p.I100T	.	.	.
PRX	57716	hgsc.bcm.edu	36	19	45591857	45591857	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181882	exon7	c.G4242A	p.R1414R	.	.	.
CXCL17	284340	hgsc.bcm.edu	36	19	47638802	47638802	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198477	exon1	c.T23G	p.L8R	.	.	.
ERCC2	2068	hgsc.bcm.edu	36	19	50550799	50550799	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000400	exon16	c.G1507A	p.A503T	.	.	.
PTPRS	5802	hgsc.bcm.edu	36	19	5176784	5176784	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002850	exon17	c.C2448T	p.G816G	.	.	.
PRKD2	25865	hgsc.bcm.edu	36	19	51869756	51869756	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001079881	exon19	c.A2501G	p.D834G	.	.	.
PTPRS	5802	hgsc.bcm.edu	36	19	5209088	5209088	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002850	exon8	c.T646C	p.C216R	.	.	.
CCDC114	93233	hgsc.bcm.edu	36	19	53498724	53498724	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144577	exon8	c.T872C	p.L291P	.	.	.
SHANK1	50944	hgsc.bcm.edu	36	19	55864349	55864349	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016148	exon22	c.G2680A	p.A894T	.	.	.
VN1R2	317701	hgsc.bcm.edu	36	19	58454155	58454155	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173856	exon1	c.A715G	p.N239D	.	.	.
CACNG8	59283	hgsc.bcm.edu	36	19	59158356	59158356	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031895	exon1	c.C148A	p.L50I	.	.	.
KIR3DL3	115653	hgsc.bcm.edu	36	19	59931021	59931021	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153443	exon4	c.A488G	p.D163G	.	.	.
KIR3DL1	3811	hgsc.bcm.edu	36	19	60025037	60025037	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013289	exon5	c.C861T	p.H287H	.	.	.
NLRP4	147945	hgsc.bcm.edu	36	19	61082089	61082089	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_134444	exon9	c.G2814T	p.V938V	.	.	.
NLRP8	126205	hgsc.bcm.edu	36	19	61157892	61157892	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_176811	exon3	c.T656C	p.L219P	.	.	.
NLRP8	126205	hgsc.bcm.edu	36	19	61158495	61158495	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_176811	exon3	c.G1259C	p.C420S	.	.	.
ZNF667	63934	hgsc.bcm.edu	36	19	61644796	61644796	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022103	exon5	c.A1380G	p.E460E	.	.	.
PEG3	5178	hgsc.bcm.edu	36	19	62019192	62019192	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001146186	exon7	c.C2430T	p.F810F	.	.	.
ZNF550	162972	hgsc.bcm.edu	36	19	62750344	62750344	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001039654	exon2	c.G957A	p.Q319Q	.	.	.
ZNF552	79818	hgsc.bcm.edu	36	19	63011839	63011839	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024762	exon3	c.T605A	p.V202E	.	.	.
CRB3	92359	hgsc.bcm.edu	36	19	6416575	6416575	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_174881	exon3	c.T102C	p.N34N	.	.	.
CD209	30835	hgsc.bcm.edu	36	19	7714054	7714054	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001144894	exon5	c.T954C	p.N318N	.	.	.
ABCA7	10347	hgsc.bcm.edu	36	19	992422	992422	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019112	exon2	c.A62C	p.Q21P	.	.	.
UBR5	51366	hgsc.bcm.edu	36	8	103380365	103380365	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015902	exon25	c.A3213G	p.T1071T	.	.	.
WDSOF1	25879	hgsc.bcm.edu	36	8	104517059	104517059	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015420	exon8	c.A1271G	p.D424G	.	.	.
TRHR	7201	hgsc.bcm.edu	36	8	110200771	110200771	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003301	exon2	c.A1108G	p.I370V	.	.	.
CSMD3	114788	hgsc.bcm.edu	36	8	113368485	113368485	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198123	exon58	c.G9315A	p.R3105R	.	.	.
CSMD3	114788	hgsc.bcm.edu	36	8	113654964	113654964	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198123	exon24	c.G3984A	p.W1328X	.	.	.
RAD21	5885	hgsc.bcm.edu	36	8	117934118	117934118	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006265	exon10	c.G1172A	p.R391H	.	.	.
DEPDC6	64798	hgsc.bcm.edu	36	8	121131076	121131076	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022783	exon9	c.G1182A	p.T394T	.	.	.
SGCZ	137868	hgsc.bcm.edu	36	8	14066572	14066572	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139167	exon5	c.T435C	p.A145A	.	.	.
TRAPPC9	83696	hgsc.bcm.edu	36	8	141300756	141300756	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001160372	exon17	c.A2540G	p.D847G	.	.	.
SGCZ	137868	hgsc.bcm.edu	36	8	14456741	14456741	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139167	exon2	c.A105G	p.Q35Q	.	.	.
ZNF596	169270	hgsc.bcm.edu	36	8	186098	186098	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001042416	exon6	c.A1251C	p.K417N	.	.	.
BMP1	649	hgsc.bcm.edu	36	8	22108366	22108366	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006129	exon12	c.A1628G	p.N543S	.	.	.
DPYSL2	1808	hgsc.bcm.edu	36	8	26548249	26548249	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001386	exon8	c.G727A	p.A243T	.	.	.
EXTL3	2137	hgsc.bcm.edu	36	8	28630872	28630872	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001440	exon3	c.C1377T	p.A459A	.	.	.
WRN	7486	hgsc.bcm.edu	36	8	31058218	31058218	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000553	exon9	c.T1133C	p.V378A	.	.	.
NRG1	3084	hgsc.bcm.edu	36	8	32625065	32625065	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013959	exon1	c.A287C	p.K96T	.	.	.
C8orf41	80185	hgsc.bcm.edu	36	8	33476272	33476272	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025115	exon7	c.G1488T	p.V496V	.	.	.
ANK1	286	hgsc.bcm.edu	36	8	41641494	41641494	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142445	exon1	c.C205T	p.R69W	.	.	.
ANK1	286	hgsc.bcm.edu	36	8	41692384	41692384	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020475	exon14	c.T1545C	p.H515H	.	.	.
ANK1	286	hgsc.bcm.edu	36	8	41734739	41734739	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020475	exon2	c.A101G	p.N34S	.	.	.
MYST3	7994	hgsc.bcm.edu	36	8	41918104	41918104	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001099413	exon16	c.T2452C	p.S818P	.	.	.
RP1	6101	hgsc.bcm.edu	36	8	55704508	55704508	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006269	exon4	c.G5513A	p.R1838H	.	.	.
IMPAD1	54928	hgsc.bcm.edu	36	8	58053233	58053233	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017813	exon3	c.T576C	p.T192T	.	.	.
CPA6	57094	hgsc.bcm.edu	36	8	68592800	68592800	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020361	exon3	c.T229C	p.S77P	.	.	.
EYA1	2138	hgsc.bcm.edu	36	8	72346681	72346681	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_172060	exon8	c.A733G	p.S245G	.	.	.
TRPA1	8989	hgsc.bcm.edu	36	8	73125642	73125642	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007332	exon15	c.G1830T	p.K610N	.	.	.
TRPA1	8989	hgsc.bcm.edu	36	8	73128614	73128614	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007332	exon13	c.C1572T	p.G524G	.	.	.
RUNX1T1	862	hgsc.bcm.edu	36	8	93041708	93041708	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001198626	exon13	c.G1753C	p.A585P	.	.	.
GEM	2669	hgsc.bcm.edu	36	8	95341780	95341780	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181702	exon2	c.G128T	p.R43L	.	.	.
TP53INP1	94241	hgsc.bcm.edu	36	8	96021587	96021587	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001135733	exon3	c.A150G	p.E50E	.	.	.
PTDSS1	9791	hgsc.bcm.edu	36	8	97376515	97376515	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014754	exon5	c.A455C	p.N152T	.	.	.
ATAD2	29028	hgsc.bcm.edu	36	8	124454074	124454074	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014109	exon3	c.354delA	p.K118fs	.	.	.
COL11A1	1301	hgsc.bcm.edu	36	1	103256013	103256013	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001854	exon11	c.C1364A	p.P455H	.	.	.
PEX14	5195	hgsc.bcm.edu	36	1	10601037	10601037	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004565	exon5	c.A360C	p.A120A	.	.	.
PEX14	5195	hgsc.bcm.edu	36	1	10605666	10605666	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004565	exon6	c.T388C	p.Y130H	.	.	.
CTTNBP2NL	55917	hgsc.bcm.edu	36	1	112793273	112793273	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018704	exon4	c.C286T	p.R96C	.	.	.
HIPK1	204851	hgsc.bcm.edu	36	1	114312791	114312791	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198269	exon12	c.T1647C	p.S549S	.	.	.
TSPAN2	10100	hgsc.bcm.edu	36	1	115406297	115406297	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005725	exon3	c.G252A	p.S84S	.	.	.
MIIP	60672	hgsc.bcm.edu	36	1	12013927	12013927	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021933	exon9	c.G960T	p.W320C	.	.	.
ACP6	51205	hgsc.bcm.edu	36	1	145588626	145588626	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016361	exon8	c.C921A	p.I307I	.	.	.
PI4KB	5298	hgsc.bcm.edu	36	1	149541051	149541051	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001198775	exon6	c.T646C	p.S216P	.	.	.
RFX5	5993	hgsc.bcm.edu	36	1	149581952	149581952	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001025603	exon11	c.A1185G	p.G395G	.	.	.
TNRC4	11189	hgsc.bcm.edu	36	1	149946965	149946965	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007185	exon6	c.A557C	p.Q186P	.	.	.
S100A9	6280	hgsc.bcm.edu	36	1	151599787	151599787	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002965	exon3	c.A194G	p.D65G	.	.	.
UBAP2L	9898	hgsc.bcm.edu	36	1	152500199	152500199	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014847	exon23	c.C2786A	p.A929D	.	.	.
FLAD1	80308	hgsc.bcm.edu	36	1	153228674	153228674	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025207	exon3	c.A1132G	p.K378E	.	.	.
KRTCAP2	200185	hgsc.bcm.edu	36	1	153411861	153411861	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173852	exon2	c.G214T	p.G72C	.	.	.
GON4L	54856	hgsc.bcm.edu	36	1	154001634	154001634	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032292	exon21	c.G4254T	p.M1418I	.	.	.
ARHGEF2	9181	hgsc.bcm.edu	36	1	154202851	154202851	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001162383	exon4	c.C320T	p.S107F	.	.	.
SLC25A44	9673	hgsc.bcm.edu	36	1	154444367	154444367	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014655	exon3	c.T692C	p.L231P	.	.	.
OR6Y1	391112	hgsc.bcm.edu	36	1	156784067	156784067	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005189	exon1	c.A453G	p.G151G	.	.	.
FCER1A	2205	hgsc.bcm.edu	36	1	157544201	157544201	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002001	exon6	c.T629C	p.L210S	.	.	.
PIGM	93183	hgsc.bcm.edu	36	1	158267333	158267333	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145167	exon1	c.A821G	p.Y274C	.	.	.
KCNJ10	3766	hgsc.bcm.edu	36	1	158278243	158278243	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002241	exon2	c.A704G	p.N235S	.	.	.
F11R	50848	hgsc.bcm.edu	36	1	159236590	159236590	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016946	exon5	c.C561A	p.S187S	.	.	.
POGK	57645	hgsc.bcm.edu	36	1	165084951	165084951	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017542	exon5	c.T511A	p.Y171N	.	.	.
TNR	7143	hgsc.bcm.edu	36	1	173627154	173627154	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003285	exon7	c.C1400T	p.T467M	.	.	.
RASAL2	9462	hgsc.bcm.edu	36	1	176681327	176681327	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_170692	exon9	c.G1534A	p.D512N	.	.	.
ZNF648	127665	hgsc.bcm.edu	36	1	180293328	180293328	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001009992	exon2	c.G441A	p.A147A	.	.	.
ZNF648	127665	hgsc.bcm.edu	36	1	180293378	180293378	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001009992	exon2	c.G391A	p.A131T	.	.	.
RGL1	23179	hgsc.bcm.edu	36	1	182142820	182142820	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015149	exon15	c.G1629A	p.S543S	.	.	.
CDC73	79577	hgsc.bcm.edu	36	1	191468805	191468805	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024529	exon14	c.T1214C	p.I405T	.	.	.
CFH	3075	hgsc.bcm.edu	36	1	194915542	194915542	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000186	exon6	c.T786C	p.C262C	.	.	.
KIF21B	23046	hgsc.bcm.edu	36	1	199215422	199215422	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017596	exon29	c.G3985A	p.A1329T	.	.	.
NAV1	89796	hgsc.bcm.edu	36	1	200048394	200048394	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001167738	exon24	c.A4021G	p.T1341A	.	.	.
RNPEP	6051	hgsc.bcm.edu	36	1	200239007	200239007	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020216	exon9	c.G1446A	p.W482X	.	.	.
PPP1R15B	84919	hgsc.bcm.edu	36	1	202645781	202645781	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032833	exon1	c.G1382A	p.S461N	.	.	.
RBBP5	5929	hgsc.bcm.edu	36	1	203332599	203332599	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005057	exon12	c.C1230T	p.D410D	.	.	.
NUAK2	81788	hgsc.bcm.edu	36	1	203544439	203544439	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030952	exon3	c.A397G	p.S133G	.	.	.
HP1BP3	50809	hgsc.bcm.edu	36	1	20964475	20964475	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016287	exon8	c.A872G	p.K291R	.	.	.
EIF4G3	8672	hgsc.bcm.edu	36	1	21028232	21028232	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003760	exon26	c.T4014C	p.L1338L	.	.	.
DTL	51514	hgsc.bcm.edu	36	1	210284675	210284675	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016448	exon3	c.C229T	p.R77X	.	.	.
EIF4G3	8672	hgsc.bcm.edu	36	1	21141096	21141096	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003760	exon9	c.G970T	p.D324Y	.	.	.
PROX1	5629	hgsc.bcm.edu	36	1	212238178	212238178	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002763	exon2	c.C1677T	p.C559C	.	.	.
CENPF	1063	hgsc.bcm.edu	36	1	212897270	212897270	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016343	exon18	c.T8857C	p.F2953L	.	.	.
USH2A	7399	hgsc.bcm.edu	36	1	214329088	214329088	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_206933	exon23	c.T4775C	p.V1592A	.	.	.
TLR5	7100	hgsc.bcm.edu	36	1	221352195	221352195	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003268	exon6	c.G802A	p.G268R	.	.	.
EPHB2	2048	hgsc.bcm.edu	36	1	23109519	23109519	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017449	exon14	c.G2560A	p.A854T	.	.	.
HNRNPU	3192	hgsc.bcm.edu	36	1	243090315	243090315	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004501	exon4	c.C905T	p.A302V	.	.	.
IL22RA1	58985	hgsc.bcm.edu	36	1	24333407	24333407	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021258	exon4	c.A412G	p.I138V	.	.	.
TXLNA	200081	hgsc.bcm.edu	36	1	32428258	32428258	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_175852	exon6	c.C784T	p.R262W	.	.	.
HDAC1	3065	hgsc.bcm.edu	36	1	32569967	32569967	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004964	exon11	c.G1192A	p.E398K	.	.	.
CSMD2	114784	hgsc.bcm.edu	36	1	33818994	33818994	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052896	exon49	c.C7339T	p.R2447C	.	.	.
DLGAP3	58512	hgsc.bcm.edu	36	1	35143423	35143423	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001080418	exon1	c.C149T	p.P50L	.	.	.
WDR8	49856	hgsc.bcm.edu	36	1	3553921	3553921	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017818	exon2	c.T133C	p.Y45H	.	.	.
KIAA0319L	79932	hgsc.bcm.edu	36	1	35692588	35692588	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024874	exon11	c.A1742G	p.Q581R	.	.	.
EIF2C1	26523	hgsc.bcm.edu	36	1	36145253	36145253	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012199	exon12	c.T1528C	p.Y510H	.	.	.
CCDC27	148870	hgsc.bcm.edu	36	1	3663282	3663282	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152492	exon4	c.A679G	p.M227V	.	.	.
GJA9	81025	hgsc.bcm.edu	36	1	39113480	39113480	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030772	exon2	c.A878C	p.H293P	.	.	.
SLFNL1	200172	hgsc.bcm.edu	36	1	41256158	41256158	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144990	exon3	c.C693T	p.S231S	.	.	.
WDR65	149465	hgsc.bcm.edu	36	1	43411017	43411017	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001167966	exon2	c.A6G	p.S2S	.	.	.
PTPRF	5792	hgsc.bcm.edu	36	1	43791846	43791846	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_130440	exon4	c.G188A	p.R63H	.	.	.
SLC6A9	6536	hgsc.bcm.edu	36	1	44240891	44240891	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_201649	exon7	c.G957A	p.T319T	.	.	.
RAD54L	8438	hgsc.bcm.edu	36	1	46516097	46516097	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142548	exon18	c.A1891G	p.I631V	.	.	.
LRRC41	10489	hgsc.bcm.edu	36	1	46535865	46535865	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006369	exon3	c.G314A	p.R105Q	.	.	.
LRRC41	10489	hgsc.bcm.edu	36	1	46535869	46535869	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006369	exon3	c.C310T	p.R104C	.	.	.
CC2D1B	200014	hgsc.bcm.edu	36	1	52598409	52598409	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032449	exon7	c.C688T	p.R230W	.	.	.
CDCP2	200008	hgsc.bcm.edu	36	1	54379466	54379466	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_201546	exon3	c.G656A	p.G219D	.	.	.
ANGPTL3	27329	hgsc.bcm.edu	36	1	62843002	62843002	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014495	exon7	c.C1309A	p.Q437K	.	.	.
LEPR	3953	hgsc.bcm.edu	36	1	65874641	65874641	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002303	exon20	c.T2853C	p.G951G	.	.	.
C1orf173	127254	hgsc.bcm.edu	36	1	74859120	74859120	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001002912	exon8	c.A886G	p.K296E	.	.	.
ACADM	34	hgsc.bcm.edu	36	1	75973102	75973102	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000016	exon6	c.G426T	p.K142N	.	.	.
LRRC8B	23507	hgsc.bcm.edu	36	1	89821093	89821093	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015350	exon5	c.G296A	p.R99Q	.	.	.
TMED5	50999	hgsc.bcm.edu	36	1	93392957	93392957	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016040	exon4	c.G548A	p.R183H	.	.	.
PAP2D	163404	hgsc.bcm.edu	36	1	99191337	99191337	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001037317	exon3	c.G498T	p.Q166H	.	.	.
LPPR4	9890	hgsc.bcm.edu	36	1	99537250	99537250	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014839	exon4	c.G610A	p.A204T	.	.	.
PALMD	54873	hgsc.bcm.edu	36	1	99927489	99927489	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017734	exon7	c.C1085T	p.A362V	.	.	.
PCSK7	9159	hgsc.bcm.edu	36	11	116582137	116582137	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004716	exon17	c.A2144C	p.E715A	.	.	.
MPZL2	10205	hgsc.bcm.edu	36	11	117638412	117638412	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144765	exon3	c.T387C	p.P129P	.	.	.
MPZL2	10205	hgsc.bcm.edu	36	11	117638456	117638456	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144765	exon3	c.T343C	p.F115L	.	.	.
STT3A	3703	hgsc.bcm.edu	36	11	124989277	124989277	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152713	exon14	c.G1640A	p.W547X	.	.	.
PATE2	399967	hgsc.bcm.edu	36	11	125153082	125153082	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_212555	exon3	c.T102A	p.C34X	.	.	.
CDON	50937	hgsc.bcm.edu	36	11	125356285	125356285	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016952	exon17	c.C3145A	p.L1049I	.	.	.
CDON	50937	hgsc.bcm.edu	36	11	125369426	125369426	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016952	exon14	c.T2613C	p.S871S	.	.	.
ST3GAL4	6484	hgsc.bcm.edu	36	11	125783295	125783295	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006278	exon7	c.A421G	p.I141V	.	.	.
RICS	9743	hgsc.bcm.edu	36	11	128344899	128344899	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014715	exon13	c.C4330T	p.R1444C	.	.	.
PRDM10	56980	hgsc.bcm.edu	36	11	129319939	129319939	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020228	exon6	c.T699C	p.F233F	.	.	.
ACAD8	27034	hgsc.bcm.edu	36	11	133633682	133633682	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014384	exon4	c.G444A	p.P148P	.	.	.
PSMA1	5682	hgsc.bcm.edu	36	11	14495794	14495794	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_148976	exon5	c.C242T	p.A81V	.	.	.
LDHA	3939	hgsc.bcm.edu	36	11	18385247	18385247	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001135239	exon7	c.A668G	p.Y223C	.	.	.
ANO3	63982	hgsc.bcm.edu	36	11	26421891	26421891	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031418	exon3	c.A245T	p.N82I	.	.	.
KCNQ1	3784	hgsc.bcm.edu	36	11	2746700	2746700	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181798	exon12	c.A1184G	p.Y395C	.	.	.
CSTF3	1479	hgsc.bcm.edu	36	11	33077213	33077213	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001326	exon12	c.A996G	p.I332M	.	.	.
CD82	3732	hgsc.bcm.edu	36	11	44583272	44583272	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001024844	exon5	c.C225T	p.I75I	.	.	.
TSPAN18	90139	hgsc.bcm.edu	36	11	44904841	44904841	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_130783	exon8	c.T656A	p.V219D	.	.	.
AMBRA1	55626	hgsc.bcm.edu	36	11	46525259	46525259	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017749	exon4	c.G358A	p.V120I	.	.	.
RNH1	6050	hgsc.bcm.edu	36	11	489072	489072	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_203384	exon5	c.G557A	p.G186D	.	.	.
OR52A5	390054	hgsc.bcm.edu	36	11	5109797	5109797	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005160	exon1	c.A652G	p.T218A	.	.	.
UBQLN3	50613	hgsc.bcm.edu	36	11	5487330	5487330	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017481	exon2	c.G35C	p.S12T	.	.	.
OR8H1	219469	hgsc.bcm.edu	36	11	55814691	55814691	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005199	exon1	c.G424A	p.A142T	.	.	.
RTN4RL2	349667	hgsc.bcm.edu	36	11	56992075	56992075	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178570	exon2	c.T449C	p.I150T	.	.	.
CD5	921	hgsc.bcm.edu	36	11	60626616	60626616	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014207	exon1	c.T8G	p.M3R	.	.	.
DDB1	1642	hgsc.bcm.edu	36	11	60854041	60854041	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001923	exon3	c.A292G	p.I98V	.	.	.
DAK	26007	hgsc.bcm.edu	36	11	60866631	60866631	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015533	exon9	c.G700A	p.A234T	.	.	.
INTS5	80789	hgsc.bcm.edu	36	11	62173508	62173508	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030628	exon2	c.C620T	p.A207V	.	.	.
ARL2	402	hgsc.bcm.edu	36	11	64545848	64545848	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001667	exon5	c.C500A	p.P167Q	.	.	.
POLA2	23649	hgsc.bcm.edu	36	11	64820000	64820000	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002689	exon17	c.T1610C	p.V537A	.	.	.
CD248	57124	hgsc.bcm.edu	36	11	65839639	65839639	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020404	exon1	c.A1436G	p.D479G	.	.	.
SPTBN2	6712	hgsc.bcm.edu	36	11	66216782	66216782	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006946	exon25	c.G4991A	p.R1664Q	.	.	.
PC	5091	hgsc.bcm.edu	36	11	66373787	66373787	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001040716	exon21	c.T3018C	p.D1006D	.	.	.
SSH3	54961	hgsc.bcm.edu	36	11	66828886	66828886	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017857	exon3	c.A171G	p.A57A	.	.	.
LRP5	4041	hgsc.bcm.edu	36	11	67881845	67881845	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002335	exon3	c.G640A	p.A214T	.	.	.
KRTAP5-11	440051	hgsc.bcm.edu	36	11	70971334	70971334	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005405	exon1	c.C198G	p.G66G	.	.	.
CHRDL2	25884	hgsc.bcm.edu	36	11	74119553	74119553	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015424	exon1	c.C29G	p.S10C	.	.	.
TALDO1	6888	hgsc.bcm.edu	36	11	749053	749053	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006755	exon3	c.G325A	p.A109T	.	.	.
GAB2	9846	hgsc.bcm.edu	36	11	77613875	77613875	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012296	exon5	c.A1115C	p.E372A	.	.	.
SCUBE2	57758	hgsc.bcm.edu	36	11	9026213	9026213	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020974	exon15	c.A1648G	p.S550G	.	.	.
PAK1IP1	55003	hgsc.bcm.edu	36	6	10815672	10815672	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017906	exon8	c.A779G	p.H260R	.	.	.
LAMA4	3910	hgsc.bcm.edu	36	6	112568812	112568812	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001105207	exon22	c.G2798T	p.G933V	.	.	.
RSPH4A	345895	hgsc.bcm.edu	36	6	117044678	117044678	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001161664	exon1	c.G199A	p.A67T	.	.	.
GPRC6A	222545	hgsc.bcm.edu	36	6	117220164	117220164	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_148963	exon6	c.A2615G	p.D872G	.	.	.
RLBP1L2	134829	hgsc.bcm.edu	36	6	123360710	123360710	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001010852	exon2	c.A89C	p.D30A	.	.	.
LAMA2	3908	hgsc.bcm.edu	36	6	129633517	129633517	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001079823	exon17	c.A2378G	p.Y793C	.	.	.
LAMA2	3908	hgsc.bcm.edu	36	6	129691240	129691240	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001079823	exon29	c.C4301T	p.S1434L	.	.	.
MAP7	9053	hgsc.bcm.edu	36	6	136774504	136774504	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001198614	exon4	c.A257G	p.D86G	.	.	.
MAP3K5	4217	hgsc.bcm.edu	36	6	136930675	136930675	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005923	exon26	c.A3548T	p.E1183V	.	.	.
IL20RA	53832	hgsc.bcm.edu	36	6	137364815	137364815	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014432	exon7	c.C1235T	p.A412V	.	.	.
PEX3	8504	hgsc.bcm.edu	36	6	143837661	143837661	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003630	exon9	c.A793G	p.N265D	.	.	.
EPM2A	7957	hgsc.bcm.edu	36	6	145990520	145990520	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001018041	exon4	c.C721A	p.R241R	.	.	.
ESR1	2099	hgsc.bcm.edu	36	6	152423912	152423912	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001122740	exon7	c.G1329T	p.E443D	.	.	.
SYNE1	23345	hgsc.bcm.edu	36	6	152769844	152769844	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033071	exon45	c.G6742A	p.E2248K	.	.	.
MAP3K4	4216	hgsc.bcm.edu	36	6	161375377	161375377	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006724	exon2	c.C249T	p.T83T	.	.	.
PDE10A	10846	hgsc.bcm.edu	36	6	165762152	165762152	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006661	exon11	c.T809C	p.L270P	.	.	.
PHF10	55274	hgsc.bcm.edu	36	6	169854538	169854538	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018288	exon8	c.T826C	p.Y276H	.	.	.
TRIM38	10475	hgsc.bcm.edu	36	6	26077553	26077553	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006355	exon4	c.A433G	p.T145A	.	.	.
ZNF184	7738	hgsc.bcm.edu	36	6	27527790	27527790	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007149	exon6	c.G1527T	p.K509N	.	.	.
ZNF192	7745	hgsc.bcm.edu	36	6	28229022	28229022	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006298	exon6	c.A985G	p.K329E	.	.	.
RIPK1	8737	hgsc.bcm.edu	36	6	3028443	3028443	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003804	exon4	c.C585A	p.P195P	.	.	.
PPP1R10	5514	hgsc.bcm.edu	36	6	30679973	30679973	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002714	exon14	c.T1299C	p.A433A	.	.	.
ITPR3	3710	hgsc.bcm.edu	36	6	33747940	33747940	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002224	exon22	c.T2885G	p.I962S	.	.	.
TAF11	6882	hgsc.bcm.edu	36	6	34958785	34958785	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005643	exon2	c.A222G	p.S74S	.	.	.
FTSJD2	23070	hgsc.bcm.edu	36	6	37534419	37534419	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015050	exon9	c.C831T	p.C277C	.	.	.
C6orf129	154467	hgsc.bcm.edu	36	6	37560584	37560584	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138493	exon3	c.T170C	p.M57T	.	.	.
UBR2	23304	hgsc.bcm.edu	36	6	42745936	42745936	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015255	exon35	c.C4010T	p.A1337V	.	.	.
UBR2	23304	hgsc.bcm.edu	36	6	42752505	42752505	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015255	exon40	c.A4394G	p.N1465S	.	.	.
IL17F	112744	hgsc.bcm.edu	36	6	52209797	52209797	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052872	exon3	c.T383C	p.L128P	.	.	.
EXOC2	55770	hgsc.bcm.edu	36	6	537567	537567	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018303	exon11	c.C1094T	p.A365V	.	.	.
LY86	9450	hgsc.bcm.edu	36	6	6571609	6571609	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004271	exon3	c.A308G	p.E103G	.	.	.
EYS	346007	hgsc.bcm.edu	36	6	66261904	66261904	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198283	exon3	c.G121A	p.V41I	.	.	.
KCNQ5	56479	hgsc.bcm.edu	36	6	73961191	73961191	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001160133	exon15	c.G2189C	p.S730T	.	.	.
FILIP1	27145	hgsc.bcm.edu	36	6	76129253	76129253	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015687	exon3	c.T377C	p.V126A	.	.	.
PHIP	55023	hgsc.bcm.edu	36	6	79763880	79763880	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017934	exon19	c.T2171C	p.V724A	.	.	.
SNX14	57231	hgsc.bcm.edu	36	6	86310093	86310093	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020468	exon11	c.A1081G	p.S361G	.	.	.
KLHL32	114792	hgsc.bcm.edu	36	6	97619289	97619289	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052904	exon5	c.A377G	p.E126G	.	.	.
DNAH9	1770	hgsc.bcm.edu	36	17	11719062	11719062	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001372	exon53	c.G10314A	p.W3438X	.	.	.
INPP5K	51763	hgsc.bcm.edu	36	17	1348024	1348024	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016532	exon8	c.G919A	p.G307S	.	.	.
PRPF8	10594	hgsc.bcm.edu	36	17	1531912	1531912	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006445	exon5	c.C605A	p.P202H	.	.	.
B9D1	27077	hgsc.bcm.edu	36	17	19187750	19187750	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015681	exon6	c.C418T	p.R140W	.	.	.
ALDH3A2	224	hgsc.bcm.edu	36	17	19507346	19507346	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000382	exon7	c.A1049G	p.N350S	.	.	.
SUPT6H	6830	hgsc.bcm.edu	36	17	24026570	24026570	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003170	exon6	c.A563G	p.D188G	.	.	.
SUPT6H	6830	hgsc.bcm.edu	36	17	24036007	24036007	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003170	exon19	c.C2388T	p.C796C	.	.	.
LIG3	3980	hgsc.bcm.edu	36	17	30343797	30343797	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013975	exon8	c.G1428A	p.S476S	.	.	.
RAD51L3	5892	hgsc.bcm.edu	36	17	30452350	30452350	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002878	exon9	c.G886A	p.A296T	.	.	.
SLFN5	162394	hgsc.bcm.edu	36	17	30615896	30615896	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144975	exon4	c.T1720A	p.L574M	.	.	.
SLFN13	146857	hgsc.bcm.edu	36	17	30795756	30795756	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144682	exon3	c.G1057A	p.A353T	.	.	.
KRT25	147183	hgsc.bcm.edu	36	17	36161026	36161026	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181534	exon4	c.G748A	p.V250I	.	.	.
HAP1	9001	hgsc.bcm.edu	36	17	37141859	37141859	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001079871	exon4	c.A752C	p.E251A	.	.	.
CAMKK1	84254	hgsc.bcm.edu	36	17	3722646	3722646	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032294	exon12	c.C1075A	p.L359M	.	.	.
STAT5B	6777	hgsc.bcm.edu	36	17	37621594	37621594	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012448	exon12	c.G1437A	p.T479T	.	.	.
MLX	6945	hgsc.bcm.edu	36	17	37975657	37975657	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198205	exon6	c.T518G	p.I173S	.	.	.
EZH1	2145	hgsc.bcm.edu	36	17	38124122	38124122	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001991	exon9	c.T807C	p.L269L	.	.	.
AARSD1	80755	hgsc.bcm.edu	36	17	38361485	38361485	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025267	exon12	c.A1033G	p.K345E	.	.	.
ITGA2B	3674	hgsc.bcm.edu	36	17	39810617	39810617	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000419	exon21	c.G2162A	p.G721D	.	.	.
ARHGAP27	201176	hgsc.bcm.edu	36	17	40829373	40829373	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_199282	exon14	c.G1211A	p.R404H	.	.	.
RNF167	26001	hgsc.bcm.edu	36	17	4788989	4788989	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015528	exon10	c.T986C	p.L329P	.	.	.
STXBP4	252983	hgsc.bcm.edu	36	17	50431787	50431787	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178509	exon5	c.G263A	p.S88N	.	.	.
HEATR6	63897	hgsc.bcm.edu	36	17	55505354	55505354	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022070	exon4	c.T537A	p.P179P	.	.	.
TLK2	11011	hgsc.bcm.edu	36	17	58007823	58007823	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006852	exon13	c.T1143C	p.H381H	.	.	.
PITPNM3	83394	hgsc.bcm.edu	36	17	6307908	6307908	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031220	exon17	c.C2174T	p.A725V	.	.	.
PITPNM3	83394	hgsc.bcm.edu	36	17	6308283	6308283	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031220	exon16	c.G2087A	p.R696H	.	.	.
FBXO39	162517	hgsc.bcm.edu	36	17	6624124	6624124	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153230	exon2	c.T213C	p.H71H	.	.	.
ALOX12	239	hgsc.bcm.edu	36	17	6849924	6849924	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000697	exon10	c.C1272T	p.G424G	.	.	.
DNAI2	64446	hgsc.bcm.edu	36	17	69821899	69821899	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_023036	exon13	c.G1767T	p.E589D	.	.	.
SRP68	6730	hgsc.bcm.edu	36	17	71548137	71548137	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014230	exon15	c.T1614C	p.A538A	.	.	.
UBE2O	63893	hgsc.bcm.edu	36	17	71906009	71906009	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022066	exon12	c.T1947C	p.P649P	.	.	.
TNFSF12-TNFSF13	407977	hgsc.bcm.edu	36	17	7394172	7394172	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_172089	exon3	c.C219T	p.P73P	.	.	.
TBC1D16	125058	hgsc.bcm.edu	36	17	75536153	75536153	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019020	exon9	c.G1614A	p.A538A	.	.	.
CHD3	1107	hgsc.bcm.edu	36	17	7742597	7742597	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005852	exon13	c.G2110A	p.E704K	.	.	.
ALOXE3	59344	hgsc.bcm.edu	36	17	7959060	7959060	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001165960	exon5	c.G871A	p.V291I	.	.	.
SLC25A35	399512	hgsc.bcm.edu	36	17	8138818	8138818	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_201520	exon1	c.C33T	p.C11C	.	.	.
CDC27	996	hgsc.bcm.edu	36	17	42571161	42571161	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114091	exon13	c.T1665G	p.D555E	CDC27,lung,NS,Substitution - Missense,0	.	.
CLDN17	26285	hgsc.bcm.edu	36	21	30460641	30460641	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012131	exon1	c.C166T	p.R56X	.	.	.
GART	2618	hgsc.bcm.edu	36	21	33826564	33826564	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001136006	exon5	c.A485C	p.K162T	.	.	.
MX2	4600	hgsc.bcm.edu	36	21	41689554	41689554	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002463	exon7	c.A1042G	p.T348A	.	.	.
TRAPPC10	7109	hgsc.bcm.edu	36	21	44332104	44332104	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003274	exon17	c.A2636G	p.E879G	.	.	.
ITGB2	3689	hgsc.bcm.edu	36	21	45136279	45136279	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127491	exon11	c.C1285T	p.R429W	.	.	.
MCM3AP	8888	hgsc.bcm.edu	36	21	46485189	46485189	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003906	exon26	c.C5597T	p.S1866L	.	.	.
MCM3AP	8888	hgsc.bcm.edu	36	21	46485267	46485267	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003906	exon26	c.C5519T	p.A1840V	.	.	.
BFAR	51283	hgsc.bcm.edu	36	16	14645884	14645884	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016561	exon2	c.A180G	p.L60L	.	.	.
THUMPD1	55623	hgsc.bcm.edu	36	16	20655890	20655890	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017736	exon4	c.C875T	p.A292V	.	.	.
SRCAP	10847	hgsc.bcm.edu	36	16	30631594	30631594	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006662	exon14	c.T2087C	p.L696P	.	.	.
TRAP1	10131	hgsc.bcm.edu	36	16	3648227	3648227	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016292	exon18	c.C2019T	p.Y673Y	.	.	.
NMRAL1	57407	hgsc.bcm.edu	36	16	4459410	4459410	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020677	exon3	c.G98A	p.R33Q	.	.	.
NETO2	81831	hgsc.bcm.edu	36	16	45674935	45674935	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018092	exon9	c.C1276T	p.R426W	.	.	.
LONP2	83752	hgsc.bcm.edu	36	16	46939648	46939648	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031490	exon14	c.A2283G	p.V761V	.	.	.
BRD7	29117	hgsc.bcm.edu	36	16	48925003	48925003	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013263	exon8	c.C994T	p.R332W	.	.	.
RBL2	5934	hgsc.bcm.edu	36	16	52081571	52081571	+	Missense_Mutation	SNP	G	G	A	rs17853303	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005611	exon22	c.G3278A	p.R1093H	.	.	.
NLRC5	84166	hgsc.bcm.edu	36	16	55616796	55616796	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032206	exon6	c.A440G	p.Y147C	.	.	.
GPR114	221188	hgsc.bcm.edu	36	16	56166937	56166937	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153837	exon12	c.C1573G	p.Q525E	.	.	.
CDH8	1006	hgsc.bcm.edu	36	16	60412386	60412386	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001796	exon6	c.T968C	p.L323P	.	.	.
CDH11	1009	hgsc.bcm.edu	36	16	63539294	63539294	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001797	exon13	c.T2104C	p.Y702H	.	.	.
C16orf70	80262	hgsc.bcm.edu	36	16	65725649	65725649	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025187	exon7	c.C528T	p.G176G	.	.	.
ESRP2	80004	hgsc.bcm.edu	36	16	66822414	66822414	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024939	exon13	c.T1729C	p.Y577H	.	.	.
WWP2	11060	hgsc.bcm.edu	36	16	68390689	68390689	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_199423	exon5	c.T330C	p.N110N	.	.	.
ST3GAL2	6483	hgsc.bcm.edu	36	16	68974620	68974620	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006927	exon5	c.T733G	p.S245A	.	.	.
DHX38	9785	hgsc.bcm.edu	36	16	70687625	70687625	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014003	exon2	c.G68T	p.G23V	.	.	.
DHX38	9785	hgsc.bcm.edu	36	16	70703869	70703869	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014003	exon27	c.G3656A	p.R1219H	.	.	.
BCMO1	53630	hgsc.bcm.edu	36	16	79881681	79881681	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017429	exon11	c.T1642C	p.X548R	.	.	.
COX4I1	1327	hgsc.bcm.edu	36	16	84396942	84396942	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001861	exon4	c.C344T	p.A115V	.	.	.
ZCCHC14	23174	hgsc.bcm.edu	36	16	86003745	86003745	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015144	exon12	c.G1672A	p.A558T	.	.	.
GRIN2A	2903	hgsc.bcm.edu	36	16	9765633	9765633	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001134408	exon13	c.T3269C	p.V1090A	.	.	.
ITGAD	3681	hgsc.bcm.edu	36	16	31335406	31335406	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005353	exon20	c.G2437A	p.G813R	ITGAD,skin,NS,Substitution - Missense,0	.	.
KCTD1	284252	hgsc.bcm.edu	36	18	22293661	22293661	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198991	exon5	c.T536C	p.V179A	.	.	.
CDH2	1000	hgsc.bcm.edu	36	18	23827485	23827485	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001792	exon8	c.C1135T	p.P379S	.	.	.
EMILIN2	84034	hgsc.bcm.edu	36	18	2882271	2882271	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032048	exon4	c.C2146A	p.L716M	.	.	.
DTNA	1837	hgsc.bcm.edu	36	18	30652153	30652153	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001198938	exon9	c.G737C	p.C246S	.	.	.
FHOD3	80206	hgsc.bcm.edu	36	18	32551913	32551913	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025135	exon16	c.A2129C	p.E710A	.	.	.
HAUS1	115106	hgsc.bcm.edu	36	18	41962076	41962076	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138443	exon9	c.T824G	p.M275R	.	.	.
TCF4	6925	hgsc.bcm.edu	36	18	51075612	51075612	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001083962	exon14	c.G1078T	p.A360S	.	.	.
EPB41L3	23136	hgsc.bcm.edu	36	18	5384742	5384742	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012307	exon22	c.A3204G	p.S1068S	.	.	.
CDH19	28513	hgsc.bcm.edu	36	18	62386803	62386803	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021153	exon3	c.G320T	p.R107I	.	.	.
ADNP2	22850	hgsc.bcm.edu	36	18	75976492	75976492	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014913	exon2	c.A76T	p.I26F	.	.	.
IMPG2	50939	hgsc.bcm.edu	36	3	102459190	102459190	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016247	exon10	c.T1026G	p.D342E	.	.	.
SEC13	6396	hgsc.bcm.edu	36	3	10318028	10318028	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001136232	exon9	c.C844T	p.Q282X	.	.	.
ATP2B2	491	hgsc.bcm.edu	36	3	10375434	10375434	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001683	exon11	c.A1942G	p.I648V	.	.	.
DPPA4	55211	hgsc.bcm.edu	36	3	110532102	110532102	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018189	exon5	c.C638T	p.A213V	.	.	.
SLC9A10	285335	hgsc.bcm.edu	36	3	113422728	113422728	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_183061	exon14	c.T1607G	p.L536R	.	.	.
GRAMD1C	54762	hgsc.bcm.edu	36	3	115132333	115132333	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017577	exon11	c.A1173G	p.P391P	.	.	.
C3orf15	89876	hgsc.bcm.edu	36	3	120945636	120945636	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033364	exon14	c.T1805C	p.L602P	.	.	.
FBXO40	51725	hgsc.bcm.edu	36	3	122823383	122823383	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016298	exon3	c.A417G	p.R139R	.	.	.
GOLGB1	2804	hgsc.bcm.edu	36	3	122869603	122869603	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004487	exon19	c.G9399A	p.Q3133Q	.	.	.
PARP9	83666	hgsc.bcm.edu	36	3	123730117	123730117	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001146103	exon11	c.A2244G	p.P748P	.	.	.
PARP9	83666	hgsc.bcm.edu	36	3	123754035	123754035	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001146103	exon5	c.G1027A	p.V343I	.	.	.
PPARG	5468	hgsc.bcm.edu	36	3	12422398	12422398	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015869	exon5	c.A637G	p.M213V	.	.	.
C3orf22	152065	hgsc.bcm.edu	36	3	127751501	127751501	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152533	exon4	c.G326A	p.R109H	.	.	.
PLXND1	23129	hgsc.bcm.edu	36	3	130761260	130761260	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015103	exon32	c.A5190C	p.E1730D	.	.	.
TRH	7200	hgsc.bcm.edu	36	3	131178421	131178421	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007117	exon3	c.G401A	p.R134Q	.	.	.
PIK3R4	30849	hgsc.bcm.edu	36	3	131935386	131935386	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014602	exon4	c.A1146G	p.I382M	.	.	.
TF	7018	hgsc.bcm.edu	36	3	134977060	134977060	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001063	exon15	c.C1781T	p.A594V	.	.	.
IL20RB	53833	hgsc.bcm.edu	36	3	138196989	138196989	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144717	exon6	c.C726T	p.G242G	.	.	.
DZIP1L	199221	hgsc.bcm.edu	36	3	139269751	139269751	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173543	exon13	c.C1764A	p.S588S	.	.	.
CLSTN2	64084	hgsc.bcm.edu	36	3	141760353	141760353	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022131	exon12	c.G2005A	p.A669T	.	.	.
TRIM42	287015	hgsc.bcm.edu	36	3	141884670	141884670	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152616	exon2	c.G1018A	p.A340T	.	.	.
XRN1	54464	hgsc.bcm.edu	36	3	143627045	143627045	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019001	exon4	c.T432C	p.H144H	.	.	.
PAQR9	344838	hgsc.bcm.edu	36	3	144163803	144163803	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198504	exon1	c.C1066G	p.L356V	.	.	.
SLC9A9	285195	hgsc.bcm.edu	36	3	144468349	144468349	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173653	exon16	c.A1823T	p.D608V	.	.	.
SLC6A6	6533	hgsc.bcm.edu	36	3	14460314	14460314	+	Silent	SNP	C	C	T	rs41284011	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003043	exon3	c.C168T	p.G56G	.	.	.
SLC6A6	6533	hgsc.bcm.edu	36	3	14493806	14493806	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003043	exon11	c.C1299T	p.A433A	.	.	.
MED12L	116931	hgsc.bcm.edu	36	3	152550676	152550676	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_053002	exon15	c.A2285C	p.E762A	.	.	.
DHX36	170506	hgsc.bcm.edu	36	3	155489417	155489417	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114397	exon17	c.C1921T	p.L641L	.	.	.
MME	4311	hgsc.bcm.edu	36	3	156315504	156315504	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000902	exon4	c.C224T	p.A75V	.	.	.
IFT80	57560	hgsc.bcm.edu	36	3	161481182	161481182	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001190242	exon14	c.T1220C	p.I407T	.	.	.
SMC4	10051	hgsc.bcm.edu	36	3	161624131	161624131	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001002800	exon14	c.A2244G	p.S748S	.	.	.
PLCL2	23228	hgsc.bcm.edu	36	3	17106356	17106356	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001144382	exon7	c.G3313A	p.A1105T	.	.	.
HTR3E	285242	hgsc.bcm.edu	36	3	185304722	185304722	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182589	exon3	c.T383C	p.M128T	.	.	.
EPHB3	2049	hgsc.bcm.edu	36	3	185776330	185776330	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004443	exon4	c.A875G	p.Y292C	.	.	.
TRA2B	6434	hgsc.bcm.edu	36	3	187122572	187122572	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004593	exon5	c.C559T	p.R187C	.	.	.
DGKG	1608	hgsc.bcm.edu	36	3	187489207	187489207	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001080744	exon6	c.A530C	p.Q177P	.	.	.
PCYT1A	5130	hgsc.bcm.edu	36	3	197459489	197459489	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005017	exon5	c.A320G	p.Y107C	.	.	.
VILL	50853	hgsc.bcm.edu	36	3	38020808	38020808	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015873	exon15	c.G1864A	p.G622S	.	.	.
LRRN1	57633	hgsc.bcm.edu	36	3	3861609	3861609	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020873	exon2	c.T284C	p.F95S	.	.	.
MOBP	4336	hgsc.bcm.edu	36	3	39518711	39518711	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182935	exon3	c.C147T	p.S49S	.	.	.
KLHL18	23276	hgsc.bcm.edu	36	3	47346618	47346618	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025010	exon4	c.A575C	p.E192A	.	.	.
SCAP	22937	hgsc.bcm.edu	36	3	47433677	47433677	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012235	exon18	c.C2995T	p.L999L	.	.	.
DAG1	1605	hgsc.bcm.edu	36	3	49544620	49544620	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004393	exon3	c.A1672G	p.S558G	.	.	.
UBA7	7318	hgsc.bcm.edu	36	3	49825557	49825557	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003335	exon4	c.A409G	p.T137A	.	.	.
ACY1	95	hgsc.bcm.edu	36	3	51994921	51994921	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001198897	exon5	c.A278G	p.H93R	.	.	.
NEK4	6787	hgsc.bcm.edu	36	3	52748535	52748535	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001193533	exon13	c.G1982T	p.G661V	.	.	.
IL17RB	55540	hgsc.bcm.edu	36	3	53858789	53858789	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018725	exon3	c.A153G	p.E51E	.	.	.
ARHGEF3	50650	hgsc.bcm.edu	36	3	56738401	56738401	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001128615	exon13	c.T1614A	p.C538X	.	.	.
FLNB	2317	hgsc.bcm.edu	36	3	58082107	58082107	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001164317	exon20	c.T2963C	p.V988A	.	.	.
C3orf67	200844	hgsc.bcm.edu	36	3	58824520	58824520	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198463	exon12	c.A1022G	p.Q341R	.	.	.
THOC7	80145	hgsc.bcm.edu	36	3	63799102	63799102	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025075	exon3	c.T251A	p.I84N	.	.	.
PRICKLE2	166336	hgsc.bcm.edu	36	3	64060414	64060414	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198859	exon8	c.T1888C	p.Y630H	.	.	.
EIF4E3	317649	hgsc.bcm.edu	36	3	71816541	71816541	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173359	exon8	c.T339C	p.G113G	.	.	.
PAH	5053	hgsc.bcm.edu	36	12	101773182	101773182	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000277	exon6	c.G568T	p.V190L	.	.	.
HCFC2	29915	hgsc.bcm.edu	36	12	103019913	103019913	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013320	exon14	c.A1916C	p.K639T	.	.	.
POLR3B	55703	hgsc.bcm.edu	36	12	105298040	105298040	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018082	exon9	c.T716C	p.I239T	.	.	.
POLR3B	55703	hgsc.bcm.edu	36	12	105362457	105362457	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018082	exon19	c.C2042T	p.P681L	.	.	.
ACACB	32	hgsc.bcm.edu	36	12	108175315	108175315	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001093	exon42	c.C6014T	p.T2005I	.	.	.
GPN3	51184	hgsc.bcm.edu	36	12	109377806	109377806	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016301	exon6	c.T631A	p.F211I	.	.	.
TAS2R20	259295	hgsc.bcm.edu	36	12	11041306	11041306	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_176889	exon1	c.A436G	p.M146V	.	.	.
MED13L	23389	hgsc.bcm.edu	36	12	114905686	114905686	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015335	exon21	c.T4574C	p.I1525T	.	.	.
KIAA1467	57613	hgsc.bcm.edu	36	12	13105789	13105789	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020853	exon4	c.A546G	p.P182P	.	.	.
EP400	57634	hgsc.bcm.edu	36	12	131074374	131074374	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015409	exon24	c.G4787A	p.S1596N	.	.	.
EP400	57634	hgsc.bcm.edu	36	12	131115288	131115288	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015409	exon48	c.G8454A	p.P2818P	.	.	.
GRIN2B	2904	hgsc.bcm.edu	36	12	13607081	13607081	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000834	exon13	c.A4358G	p.N1453S	.	.	.
GUCY2C	2984	hgsc.bcm.edu	36	12	14684140	14684140	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004963	exon19	c.A2080G	p.R694G	.	.	.
SLCO1C1	53919	hgsc.bcm.edu	36	12	20759394	20759394	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017435	exon6	c.T584G	p.L195R	.	.	.
GYS2	2998	hgsc.bcm.edu	36	12	21581165	21581165	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021957	exon16	c.A2102G	p.Y701C	.	.	.
ABCC9	10060	hgsc.bcm.edu	36	12	21886594	21886594	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020297	exon27	c.A3394G	p.T1132A	.	.	.
C12orf11	55726	hgsc.bcm.edu	36	12	26957729	26957729	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018164	exon14	c.A1733G	p.E578G	.	.	.
KLHDC5	57542	hgsc.bcm.edu	36	12	27842068	27842068	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020782	exon3	c.G1220A	p.R407H	.	.	.
TSPAN9	10867	hgsc.bcm.edu	36	12	3259848	3259848	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001168320	exon5	c.C370G	p.L124V	.	.	.
LRRK2	120892	hgsc.bcm.edu	36	12	38975593	38975593	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198578	exon23	c.T2976G	p.N992K	.	.	.
ARID2	196528	hgsc.bcm.edu	36	12	44491518	44491518	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152641	exon4	c.A335C	p.E112A	.	.	.
AKAP3	10566	hgsc.bcm.edu	36	12	4606866	4606866	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006422	exon4	c.C1463A	p.P488H	.	.	.
HDAC7	51564	hgsc.bcm.edu	36	12	46476319	46476319	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001098416	exon8	c.G733A	p.A245T	.	.	.
SPATS2	65244	hgsc.bcm.edu	36	12	48206256	48206256	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_023071	exon14	c.T1589C	p.L530P	.	.	.
CELA1	1990	hgsc.bcm.edu	36	12	50008639	50008639	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001971	exon8	c.G766A	p.A256T	.	.	.
ITGB7	3695	hgsc.bcm.edu	36	12	51872491	51872491	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000889	exon14	c.T2045C	p.I682T	.	.	.
DCD	117159	hgsc.bcm.edu	36	12	53325247	53325247	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_053283	exon4	c.A266G	p.E89G	.	.	.
DNAJC14	85406	hgsc.bcm.edu	36	12	54502520	54502520	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032364	exon6	c.C1802A	p.A601D	.	.	.
SILV	6490	hgsc.bcm.edu	36	12	54634326	54634326	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006928	exon11	c.G1925A	p.R642H	.	.	.
LRP1	4035	hgsc.bcm.edu	36	12	55873318	55873318	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002332	exon46	c.T7648C	p.C2550R	.	.	.
R3HDM2	22864	hgsc.bcm.edu	36	12	55948990	55948990	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014925	exon15	c.T1815C	p.T605T	.	.	.
CYP27B1	1594	hgsc.bcm.edu	36	12	56445136	56445136	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000785	exon4	c.C715T	p.P239S	.	.	.
NCAPD2	9918	hgsc.bcm.edu	36	12	6490583	6490583	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014865	exon6	c.A491G	p.E164G	.	.	.
RAP1B	5908	hgsc.bcm.edu	36	12	67334189	67334189	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015646	exon5	c.A214G	p.M72V	.	.	.
ENO2	2026	hgsc.bcm.edu	36	12	6901786	6901786	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001975	exon11	c.T1195C	p.C399R	.	.	.
LPCAT3	10162	hgsc.bcm.edu	36	12	6960574	6960574	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005768	exon6	c.C530A	p.A177D	.	.	.
GLIPR1L2	144321	hgsc.bcm.edu	36	12	74103086	74103086	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152436	exon4	c.G720C	p.K240N	.	.	.
CD163	9332	hgsc.bcm.edu	36	12	7539190	7539190	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_203416	exon6	c.A1174G	p.R392G	.	.	.
KITLG	4254	hgsc.bcm.edu	36	12	87434378	87434378	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003994	exon5	c.G384T	p.K128N	.	.	.
M6PR	4074	hgsc.bcm.edu	36	12	8990105	8990105	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002355	exon2	c.C163G	p.L55V	.	.	.
USP44	84101	hgsc.bcm.edu	36	12	94451786	94451786	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001042403	exon2	c.T378C	p.G126G	.	.	.
ATP10A	57194	hgsc.bcm.edu	36	15	23498281	23498281	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024490	exon13	c.C2635T	p.R879C	.	.	.
ZFP106	64397	hgsc.bcm.edu	36	15	40523730	40523730	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022473	exon6	c.T3314C	p.L1105P	.	.	.
SPG11	80208	hgsc.bcm.edu	36	15	42663556	42663556	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025137	exon30	c.T5614C	p.W1872R	.	.	.
SEMA6D	80031	hgsc.bcm.edu	36	15	45850162	45850162	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153616	exon17	c.G1885A	p.A629T	.	.	.
FBN1	2200	hgsc.bcm.edu	36	15	46547529	46547529	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000138	exon38	c.T4645C	p.C1549R	.	.	.
CGNL1	84952	hgsc.bcm.edu	36	15	55597986	55597986	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032866	exon10	c.A2714G	p.Q905R	.	.	.
TLN2	83660	hgsc.bcm.edu	36	15	60778260	60778260	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015059	exon13	c.G1489A	p.A497T	.	.	.
ZNF609	23060	hgsc.bcm.edu	36	15	62753202	62753202	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015042	exon4	c.C1096T	p.R366C	.	.	.
RBPMS2	348093	hgsc.bcm.edu	36	15	62828353	62828353	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_194272	exon5	c.C317T	p.A106V	.	.	.
KIF23	9493	hgsc.bcm.edu	36	15	67515114	67515114	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004856	exon12	c.C1222T	p.R408W	.	.	.
MYO9A	4649	hgsc.bcm.edu	36	15	69957589	69957589	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006901	exon31	c.A5777G	p.Y1926C	.	.	.
MYO9A	4649	hgsc.bcm.edu	36	15	69979212	69979212	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006901	exon24	c.C3340T	p.R1114C	.	.	.
ACSBG1	23205	hgsc.bcm.edu	36	15	76253824	76253824	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199377	exon12	c.T1788C	p.I596I	.	.	.
RASGRF1	5923	hgsc.bcm.edu	36	15	77169822	77169822	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002891	exon1	c.G74A	p.R25H	.	.	.
MRPS11	64963	hgsc.bcm.edu	36	15	86819442	86819442	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022839	exon4	c.G379A	p.A127T	.	.	.
IQGAP1	8826	hgsc.bcm.edu	36	15	88818352	88818352	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003870	exon22	c.A2558G	p.D853G	.	.	.
IQGAP1	8826	hgsc.bcm.edu	36	15	88836799	88836799	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003870	exon35	c.A4480T	p.R1494W	.	.	.
CHD2	1106	hgsc.bcm.edu	36	15	91364467	91364467	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001271	exon38	c.C5128T	p.R1710W	.	.	.
ADH4	127	hgsc.bcm.edu	36	4	100267410	100267410	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000670	exon7	c.C952T	p.R318C	.	.	.
MTTP	4547	hgsc.bcm.edu	36	4	100747134	100747134	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000253	exon12	c.T1551C	p.T517T	.	.	.
BANK1	55024	hgsc.bcm.edu	36	4	103010711	103010711	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017935	exon5	c.A790G	p.N264D	.	.	.
MANBA	4126	hgsc.bcm.edu	36	4	103775087	103775087	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005908	exon16	c.A2321G	p.Y774C	.	.	.
FLJ20184	54848	hgsc.bcm.edu	36	4	106754028	106754028	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017700	exon3	c.T423C	p.I141I	.	.	.
C4orf21	55345	hgsc.bcm.edu	36	4	113758960	113758960	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018392	exon6	c.A1687G	p.I563V	.	.	.
ANK2	287	hgsc.bcm.edu	36	4	114377609	114377609	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020977	exon6	c.A501G	p.L167L	.	.	.
ANK2	287	hgsc.bcm.edu	36	4	114443414	114443414	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020977	exon23	c.A2518G	p.T840A	.	.	.
TRPC3	7222	hgsc.bcm.edu	36	4	123073372	123073372	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003305	exon1	c.A272T	p.E91V	.	.	.
SPRY1	10252	hgsc.bcm.edu	36	4	124542773	124542773	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005841	exon2	c.A577G	p.T193A	.	.	.
INTU	27152	hgsc.bcm.edu	36	4	128847133	128847133	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015693	exon12	c.C1830T	p.C610C	.	.	.
SCLT1	132320	hgsc.bcm.edu	36	4	130097672	130097672	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144643	exon13	c.T1105G	p.S369A	.	.	.
PCDH18	54510	hgsc.bcm.edu	36	4	138670935	138670935	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019035	exon1	c.A1758G	p.A586A	.	.	.
HHIP	64399	hgsc.bcm.edu	36	4	145800343	145800343	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022475	exon4	c.T734C	p.L245P	.	.	.
FBXW7	55294	hgsc.bcm.edu	36	4	153464900	153464900	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018315	exon10	c.C1501T	p.Q501X	.	.	.
FGA	2243	hgsc.bcm.edu	36	4	155724822	155724822	+	Nonsense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000508	exon6	c.T2505G	p.Y835X	.	.	.
CTSO	1519	hgsc.bcm.edu	36	4	157066642	157066642	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001334	exon8	c.T962C	p.V321A	.	.	.
GRIA2	2891	hgsc.bcm.edu	36	4	158500648	158500648	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001083620	exon13	c.T2053C	p.Y685H	.	.	.
TMEM144	55314	hgsc.bcm.edu	36	4	159384927	159384927	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018342	exon12	c.T930C	p.G310G	.	.	.
MARCH1	55016	hgsc.bcm.edu	36	4	164726507	164726507	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017923	exon2	c.A216G	p.E72E	.	.	.
NCAPG	64151	hgsc.bcm.edu	36	4	17451365	17451365	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022346	exon19	c.T2805G	p.G935G	.	.	.
GPM6A	2823	hgsc.bcm.edu	36	4	176810051	176810051	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_201591	exon4	c.A469G	p.N157D	.	.	.
DCTD	1635	hgsc.bcm.edu	36	4	184052742	184052742	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001921	exon4	c.G255A	p.A85A	.	.	.
WHSC1	7468	hgsc.bcm.edu	36	4	1872727	1872727	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133331	exon3	c.T548G	p.L183R	.	.	.
GRK4	2868	hgsc.bcm.edu	36	4	3008916	3008916	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182982	exon14	c.T1425C	p.C475C	.	.	.
RPL9	6133	hgsc.bcm.edu	36	4	39132899	39132899	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000661	exon6	c.T452C	p.I151T	.	.	.
LIMCH1	22998	hgsc.bcm.edu	36	4	41359751	41359751	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001112720	exon9	c.C1631T	p.S544L	.	.	.
LYAR	55646	hgsc.bcm.edu	36	4	4334522	4334522	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145725	exon4	c.C126T	p.G42G	.	.	.
EVC2	132884	hgsc.bcm.edu	36	4	5678465	5678465	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001166136	exon13	c.A1718C	p.K573T	.	.	.
PPP2R2C	5522	hgsc.bcm.edu	36	4	6375937	6375937	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020416	exon9	c.T1337C	p.M446T	.	.	.
MOBKL1A	92597	hgsc.bcm.edu	36	4	72063741	72063741	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173468	exon5	c.G442A	p.A148T	.	.	.
ALB	213	hgsc.bcm.edu	36	4	74494925	74494925	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000477	exon6	c.G648A	p.S216S	.	.	.
AFM	173	hgsc.bcm.edu	36	4	74576530	74576530	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001133	exon8	c.A921G	p.I307M	.	.	.
SCARB2	950	hgsc.bcm.edu	36	4	77310152	77310152	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005506	exon8	c.C1005T	p.I335I	.	.	.
THAP9	79725	hgsc.bcm.edu	36	4	84045107	84045107	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024672	exon2	c.A275G	p.K92R	.	.	.
ARHGAP24	83478	hgsc.bcm.edu	36	4	87135052	87135052	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031305	exon6	c.T942C	p.V314V	.	.	.
HERC3	8916	hgsc.bcm.edu	36	4	89798624	89798624	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014606	exon10	c.T1105C	p.S369P	.	.	.
BTK	695	hgsc.bcm.edu	36	X	100516924	100516924	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000061	exon2	c.C5T	p.A2V	.	.	.
RBM41	55285	hgsc.bcm.edu	36	X	106199224	106199224	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001171080	exon6	c.G992A	p.R331Q	.	.	.
COL4A6	1288	hgsc.bcm.edu	36	X	107286897	107286897	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033641	exon45	c.A5062G	p.K1688E	.	.	.
COL4A6	1288	hgsc.bcm.edu	36	X	107341601	107341601	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033641	exon7	c.A467G	p.K156R	.	.	.
COL4A6	1288	hgsc.bcm.edu	36	X	107344085	107344085	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033641	exon6	c.C354T	p.G118G	.	.	.
COL4A5	1287	hgsc.bcm.edu	36	X	107728722	107728722	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000495	exon25	c.T1914C	p.G638G	.	.	.
IRS4	8471	hgsc.bcm.edu	36	X	107865918	107865918	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003604	exon1	c.G313A	p.A105T	.	.	.
UPF3B	65109	hgsc.bcm.edu	36	X	118869518	118869518	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080632	exon3	c.G338A	p.R113H	.	.	.
ZNF449	203523	hgsc.bcm.edu	36	X	134322217	134322217	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152695	exon5	c.C1107A	p.H369Q	.	.	.
GPR112	139378	hgsc.bcm.edu	36	X	135254764	135254764	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153834	exon6	c.T1233C	p.S411S	.	.	.
VGLL1	51442	hgsc.bcm.edu	36	X	135458624	135458624	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016267	exon3	c.T425A	p.L142X	.	.	.
SOX3	6658	hgsc.bcm.edu	36	X	139414369	139414369	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005634	exon1	c.G523A	p.A175T	.	.	.
FANCB	2187	hgsc.bcm.edu	36	X	14771864	14771864	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001018113	exon10	c.G2326T	p.A776S	.	.	.
VMA21	203547	hgsc.bcm.edu	36	X	150322764	150322764	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001017980	exon2	c.T57C	p.N19N	.	.	.
GAB3	139716	hgsc.bcm.edu	36	X	153597534	153597534	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001081573	exon2	c.A337G	p.S113G	.	.	.
DKC1	1736	hgsc.bcm.edu	36	X	153647414	153647414	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001363	exon4	c.A210G	p.T70T	.	.	.
DKC1	1736	hgsc.bcm.edu	36	X	153647420	153647420	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001363	exon4	c.T216C	p.L72L	.	.	.
GRPR	2925	hgsc.bcm.edu	36	X	16052077	16052077	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005314	exon1	c.A80C	p.D27A	.	.	.
RBBP7	5931	hgsc.bcm.edu	36	X	16780111	16780111	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001198719	exon9	c.G1151A	p.R384H	.	.	.
RAI2	10742	hgsc.bcm.edu	36	X	17729815	17729815	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001172739	exon3	c.G237A	p.Q79Q	.	.	.
ARSH	347527	hgsc.bcm.edu	36	X	2934731	2934731	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001011719	exon1	c.T78C	p.G26G	.	.	.
MXRA5	25878	hgsc.bcm.edu	36	X	3250772	3250772	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015419	exon5	c.A2954G	p.K985R	.	.	.
MXRA5	25878	hgsc.bcm.edu	36	X	3258200	3258200	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015419	exon4	c.T568G	p.L190V	.	.	.
DMD	1756	hgsc.bcm.edu	36	X	32744610	32744610	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004006	exon6	c.C426A	p.S142R	.	.	.
UBA1	7317	hgsc.bcm.edu	36	X	46955202	46955202	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153280	exon19	c.G2217A	p.A739A	.	.	.
SSX5	6758	hgsc.bcm.edu	36	X	47939496	47939496	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021015	exon3	c.A83G	p.Q28R	.	.	.
CACNA1F	778	hgsc.bcm.edu	36	X	48961928	48961928	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005183	exon24	c.T2891C	p.V964A	.	.	.
FOXP3	50943	hgsc.bcm.edu	36	X	48997346	48997346	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014009	exon9	c.A943G	p.S315G	.	.	.
MAGED1	9500	hgsc.bcm.edu	36	X	51654915	51654915	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006986	exon3	c.C72A	p.A24A	.	.	.
MAGED1	9500	hgsc.bcm.edu	36	X	51656706	51656706	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006986	exon4	c.G1215A	p.P405P	.	.	.
SMC1A	8243	hgsc.bcm.edu	36	X	53426168	53426168	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006306	exon21	c.G3269A	p.R1090H	.	.	.
HUWE1	10075	hgsc.bcm.edu	36	X	53580244	53580244	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031407	exon79	c.A12247G	p.T4083A	.	.	.
HUWE1	10075	hgsc.bcm.edu	36	X	53671514	53671514	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031407	exon16	c.T1284G	p.F428L	.	.	.
FAM120C	54954	hgsc.bcm.edu	36	X	54159828	54159828	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017848	exon10	c.C2187T	p.G729G	.	.	.
RRAGB	10325	hgsc.bcm.edu	36	X	55796605	55796605	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016656	exon8	c.A752G	p.N251S	.	.	.
KLF8	11279	hgsc.bcm.edu	36	X	56308628	56308628	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001159296	exon4	c.G372A	p.T124T	.	.	.
UBQLN2	29978	hgsc.bcm.edu	36	X	56607842	56607842	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013444	exon1	c.A811G	p.M271V	.	.	.
PDZD11	51248	hgsc.bcm.edu	36	X	69423682	69423682	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016484	exon7	c.G398A	p.R133H	.	.	.
ERCC6L	54821	hgsc.bcm.edu	36	X	71343482	71343482	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017669	exon2	c.T1860C	p.S620S	.	.	.
KIAA2022	340533	hgsc.bcm.edu	36	X	73876972	73876972	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001008537	exon3	c.A4145C	p.N1382T	.	.	.
CYSLTR1	10800	hgsc.bcm.edu	36	X	77415746	77415746	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006639	exon3	c.T154C	p.Y52H	.	.	.
BRWD3	254065	hgsc.bcm.edu	36	X	79824669	79824669	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153252	exon38	c.A4348C	p.K1450Q	.	.	.
HDX	139324	hgsc.bcm.edu	36	X	83610222	83610222	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001177479	exon4	c.A1165G	p.N389D	.	.	.
ZNF711	7552	hgsc.bcm.edu	36	X	84412922	84412922	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021998	exon9	c.A1718G	p.D573G	.	.	.
PABPC5	140886	hgsc.bcm.edu	36	X	90577535	90577535	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080832	exon2	c.A303G	p.R101R	.	.	.
TSPAN6	7105	hgsc.bcm.edu	36	X	99777244	99777244	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003270	exon2	c.T243G	p.A81A	.	.	.
SYTL4	94121	hgsc.bcm.edu	36	X	99822936	99822936	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001129896	exon15	c.T1502G	p.V501G	.	.	.
GCC2	9648	hgsc.bcm.edu	36	2	108465177	108465177	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181453	exon11	c.T3183C	p.C1061C	.	.	.
MERTK	10461	hgsc.bcm.edu	36	2	112502871	112502871	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006343	exon19	c.T2959C	p.F987L	.	.	.
POLR1B	84172	hgsc.bcm.edu	36	2	113046718	113046718	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001137604	exon12	c.A2015G	p.D672G	.	.	.
POLR1B	84172	hgsc.bcm.edu	36	2	113049688	113049688	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001137604	exon14	c.A3151G	p.I1051V	.	.	.
IL1F5	26525	hgsc.bcm.edu	36	2	113536216	113536216	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012275	exon4	c.C160A	p.L54M	.	.	.
NTSR2	23620	hgsc.bcm.edu	36	2	11716279	11716279	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012344	exon4	c.A1010G	p.H337R	.	.	.
MARCO	8685	hgsc.bcm.edu	36	2	119467304	119467304	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006770	exon16	c.C1387T	p.L463L	.	.	.
POLR2D	5433	hgsc.bcm.edu	36	2	128327024	128327024	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004805	exon2	c.T199C	p.Y67H	.	.	.
YSK4	80122	hgsc.bcm.edu	36	2	135461160	135461160	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025052	exon7	c.T1752A	p.P584P	.	.	.
LCT	3938	hgsc.bcm.edu	36	2	136282725	136282725	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002299	exon8	c.T3662C	p.L1221P	.	.	.
LCT	3938	hgsc.bcm.edu	36	2	136283608	136283608	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002299	exon8	c.A2779G	p.K927E	.	.	.
LCT	3938	hgsc.bcm.edu	36	2	136286935	136286935	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002299	exon7	c.G1769A	p.R590H	.	.	.
LRP1B	53353	hgsc.bcm.edu	36	2	141075544	141075544	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018557	exon42	c.A6934G	p.I2312V	.	.	.
LRP1B	53353	hgsc.bcm.edu	36	2	141703361	141703361	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018557	exon6	c.T711A	p.T237T	.	.	.
KCNJ3	3760	hgsc.bcm.edu	36	2	155419924	155419924	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002239	exon3	c.T1359A	p.S453S	.	.	.
NR4A2	4929	hgsc.bcm.edu	36	2	156894622	156894622	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006186	exon3	c.C323T	p.P108L	.	.	.
WDSUB1	151525	hgsc.bcm.edu	36	2	159824577	159824577	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152528	exon6	c.T794C	p.V265A	.	.	.
SCN2A	6326	hgsc.bcm.edu	36	2	165932063	165932063	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001040143	exon18	c.T3611C	p.I1204T	.	.	.
ITGA6	3655	hgsc.bcm.edu	36	2	173047204	173047204	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000210	exon6	c.C951A	p.G317G	.	.	.
GPR155	151556	hgsc.bcm.edu	36	2	175012994	175012994	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001033045	exon16	c.G2190A	p.W730X	.	.	.
SESTD1	91404	hgsc.bcm.edu	36	2	179745186	179745186	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178123	exon5	c.T275C	p.V92A	.	.	.
ZNF804A	91752	hgsc.bcm.edu	36	2	185511645	185511645	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_194250	exon4	c.A3277G	p.T1093A	.	.	.
NT5C1B	93034	hgsc.bcm.edu	36	2	18627642	18627642	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033253	exon6	c.C994T	p.R332W	.	.	.
PMS1	5378	hgsc.bcm.edu	36	2	190368880	190368880	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000534	exon3	c.T273C	p.G91G	.	.	.
WDR12	55759	hgsc.bcm.edu	36	2	203472583	203472583	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018256	exon4	c.A254G	p.Y85C	.	.	.
APOB	338	hgsc.bcm.edu	36	2	21078991	21078991	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000384	exon29	c.A12808G	p.R4270G	.	.	.
APOB	338	hgsc.bcm.edu	36	2	21083839	21083839	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000384	exon26	c.C9406T	p.R3136C	.	.	.
ERBB4	2066	hgsc.bcm.edu	36	2	212295443	212295443	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005235	exon7	c.A803G	p.Y268C	.	.	.
PRKAG3	53632	hgsc.bcm.edu	36	2	219399997	219399997	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017431	exon10	c.T1066C	p.F356L	.	.	.
ABCB6	10058	hgsc.bcm.edu	36	2	219786566	219786566	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005689	exon10	c.A1645G	p.T549A	.	.	.
GMPPA	29926	hgsc.bcm.edu	36	2	220079691	220079691	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_205847	exon13	c.T1190C	p.V397A	.	.	.
AGFG1	3267	hgsc.bcm.edu	36	2	228107926	228107926	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004504	exon8	c.C1146T	p.S382S	.	.	.
DGKD	8527	hgsc.bcm.edu	36	2	234024325	234024325	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152879	exon17	c.A2057C	p.E686A	.	.	.
COL6A3	1293	hgsc.bcm.edu	36	2	237913897	237913897	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_057166	exon35	c.T6580C	p.S2194P	.	.	.
C2orf44	80304	hgsc.bcm.edu	36	2	24115836	24115836	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025203	exon2	c.T33C	p.T11T	.	.	.
MTERFD2	130916	hgsc.bcm.edu	36	2	241687520	241687520	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182501	exon2	c.C484T	p.R162C	.	.	.
HDLBP	3069	hgsc.bcm.edu	36	2	241850840	241850840	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005336	exon5	c.A409G	p.M137V	.	.	.
ADCY3	109	hgsc.bcm.edu	36	2	24899630	24899630	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004036	exon17	c.T2835C	p.G945G	.	.	.
DNMT3A	1788	hgsc.bcm.edu	36	2	25351391	25351391	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_175629	exon6	c.C562A	p.L188I	.	.	.
FOSL2	2355	hgsc.bcm.edu	36	2	28488696	28488696	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005253	exon4	c.C858T	p.S286S	.	.	.
TRMT61B	55006	hgsc.bcm.edu	36	2	28946020	28946020	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017910	exon1	c.A628G	p.M210V	.	.	.
TTC15	51112	hgsc.bcm.edu	36	2	3460474	3460474	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016030	exon10	c.T1778A	p.I593N	.	.	.
PRKD3	23683	hgsc.bcm.edu	36	2	37355271	37355271	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005813	exon10	c.C1448T	p.P483L	.	.	.
GEMIN6	79833	hgsc.bcm.edu	36	2	38862215	38862215	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024775	exon3	c.A181G	p.M61V	.	.	.
GEMIN6	79833	hgsc.bcm.edu	36	2	38862501	38862501	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024775	exon3	c.A467G	p.Q156R	.	.	.
VPS54	51542	hgsc.bcm.edu	36	2	64064518	64064518	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016516	exon2	c.T120C	p.C40C	.	.	.
PELI1	57162	hgsc.bcm.edu	36	2	64188895	64188895	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020651	exon2	c.T54C	p.G18G	.	.	.
ANXA4	307	hgsc.bcm.edu	36	2	69888581	69888581	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001153	exon6	c.G346T	p.A116S	.	.	.
GMCL1	64395	hgsc.bcm.edu	36	2	69935487	69935487	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178439	exon9	c.T963C	p.T321T	.	.	.
DQX1	165545	hgsc.bcm.edu	36	2	74599827	74599827	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133637	exon11	c.C1845T	p.L615L	.	.	.
NCAPH	23397	hgsc.bcm.edu	36	2	96382804	96382804	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015341	exon8	c.T944C	p.I315T	.	.	.
CNNM3	26505	hgsc.bcm.edu	36	2	96857219	96857219	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017623	exon4	c.G1544A	p.R515H	.	.	.
SLC25A12	8604	hgsc.bcm.edu	36	2	172457969	172457970	+	Frame_Shift_Del	DEL	AT	AT	-	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	AT	AT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003705	exon2	c.57_58del	p.19_20del	.	.	.
NCKAP1	10787	hgsc.bcm.edu	36	2	183503732	183503734	+	In_Frame_Del	DEL	TGA	TGA	-	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	TGA	TGA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013436	exon27	c.2887_2889del	p.963_963del	.	.	.
ERP44	23071	hgsc.bcm.edu	36	9	101822782	101822782	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015051	exon6	c.A524G	p.Y175C	.	.	.
ALDOB	229	hgsc.bcm.edu	36	9	103229638	103229638	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000035	exon5	c.G487A	p.A163T	.	.	.
ZNF483	158399	hgsc.bcm.edu	36	9	113343951	113343951	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133464	exon6	c.C915T	p.S305S	.	.	.
TNC	3371	hgsc.bcm.edu	36	9	116823365	116823365	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002160	exon28	c.C6498T	p.G2166G	.	.	.
DENND1A	57706	hgsc.bcm.edu	36	9	125359695	125359695	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024820	exon13	c.A968G	p.Y323C	.	.	.
ANGPTL2	23452	hgsc.bcm.edu	36	9	128891153	128891153	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012098	exon5	c.C1368G	p.G456G	.	.	.
SLC25A25	114789	hgsc.bcm.edu	36	9	129909170	129909170	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001006643	exon9	c.C807T	p.S269S	.	.	.
DOLK	22845	hgsc.bcm.edu	36	9	130748309	130748309	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014908	exon1	c.A1095G	p.V365V	.	.	.
SH3GLB2	56904	hgsc.bcm.edu	36	9	130810811	130810811	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020145	exon11	c.T1161C	p.P387P	.	.	.
PSIP1	11168	hgsc.bcm.edu	36	9	15458734	15458734	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001128217	exon14	c.A1314G	p.Q438Q	.	.	.
KIAA1797	54914	hgsc.bcm.edu	36	9	20985590	20985590	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017794	exon46	c.A5368G	p.K1790E	.	.	.
PRSS3	5646	hgsc.bcm.edu	36	9	33786644	33786644	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002771	exon2	c.C44T	p.A15V	.	.	.
C9orf131	138724	hgsc.bcm.edu	36	9	35034045	35034045	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001040411	exon2	c.C1200T	p.S400S	.	.	.
UNC13B	10497	hgsc.bcm.edu	36	9	35370483	35370483	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006377	exon17	c.T1975G	p.S659A	.	.	.
TLN1	7094	hgsc.bcm.edu	36	9	35710449	35710449	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006289	exon12	c.G1264A	p.D422N	.	.	.
MELK	9833	hgsc.bcm.edu	36	9	36587229	36587229	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014791	exon6	c.T416C	p.L139P	.	.	.
GLIS3	169792	hgsc.bcm.edu	36	9	4108443	4108443	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152629	exon3	c.G570A	p.P190P	.	.	.
NCBP1	4686	hgsc.bcm.edu	36	9	99463169	99463169	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002486	exon16	c.A1598G	p.D533G	.	.	.
NALCN	259232	hgsc.bcm.edu	36	13	100531922	100531922	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052867	exon34	c.C3842T	p.T1281M	.	.	.
MYO16	23026	hgsc.bcm.edu	36	13	108116305	108116305	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001198950	exon2	c.T99C	p.L33L	.	.	.
TMCO3	55002	hgsc.bcm.edu	36	13	113198243	113198243	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017905	exon2	c.G346A	p.G116R	.	.	.
TFDP1	7027	hgsc.bcm.edu	36	13	113313355	113313355	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007111	exon3	c.A56G	p.D19G	.	.	.
PARP4	143	hgsc.bcm.edu	36	13	23906634	23906634	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006437	exon31	c.A4645G	p.I1549V	.	.	.
RNF6	6049	hgsc.bcm.edu	36	13	25686645	25686645	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005977	exon5	c.T1374C	p.S458S	.	.	.
FLT1	2321	hgsc.bcm.edu	36	13	27801839	27801839	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002019	exon19	c.G2620A	p.A874T	.	.	.
RXFP2	122042	hgsc.bcm.edu	36	13	31265140	31265140	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001166058	exon15	c.T1629C	p.Y543Y	.	.	.
CCDC122	160857	hgsc.bcm.edu	36	13	43331922	43331922	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144974	exon5	c.A441G	p.S147S	.	.	.
ZC3H13	23091	hgsc.bcm.edu	36	13	45447628	45447628	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015070	exon12	c.A2259C	p.R753S	.	.	.
LCP1	3936	hgsc.bcm.edu	36	13	45602956	45602956	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002298	exon15	c.A1745G	p.N582S	.	.	.
VPS36	51028	hgsc.bcm.edu	36	13	51890164	51890164	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016075	exon11	c.C869T	p.A290V	.	.	.
KLF5	688	hgsc.bcm.edu	36	13	72547861	72547861	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001730	exon4	c.A1210G	p.K404E	.	.	.
LMO7	4008	hgsc.bcm.edu	36	13	75093904	75093904	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005358	exon1	c.C74G	p.T25R	.	.	.
SLITRK5	26050	hgsc.bcm.edu	36	13	87126685	87126685	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015567	exon2	c.G1041A	p.R347R	.	.	.
GPC6	10082	hgsc.bcm.edu	36	13	92995640	92995640	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005708	exon2	c.G284A	p.R95H	.	.	.
ARL3	403	hgsc.bcm.edu	36	10	104449159	104449159	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004311	exon3	c.A225G	p.R75R	.	.	.
HABP2	3026	hgsc.bcm.edu	36	10	115326939	115326939	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001177660	exon5	c.A294G	p.Q98Q	.	.	.
ABLIM1	3983	hgsc.bcm.edu	36	10	116407855	116407855	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002313	exon1	c.C95T	p.S32L	.	.	.
PLEKHA1	59338	hgsc.bcm.edu	36	10	124179316	124179316	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001001974	exon12	c.C1087G	p.P363A	.	.	.
HTRA1	5654	hgsc.bcm.edu	36	10	124258249	124258249	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002775	exon6	c.A1093G	p.T365A	.	.	.
C10orf137	26098	hgsc.bcm.edu	36	10	127416915	127416915	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015608	exon14	c.G1790T	p.S597I	.	.	.
C10orf90	118611	hgsc.bcm.edu	36	10	128183100	128183100	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001004298	exon3	c.G659A	p.R220H	.	.	.
MKI67	4288	hgsc.bcm.edu	36	10	129795203	129795203	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145966	exon12	c.C3811T	p.R1271X	.	.	.
OPTN	10133	hgsc.bcm.edu	36	10	13208002	13208002	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021980	exon10	c.A1199G	p.H400R	.	.	.
BEND7	222389	hgsc.bcm.edu	36	10	13521386	13521386	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152751	exon9	c.A1199G	p.E400G	.	.	.
FAM171A1	221061	hgsc.bcm.edu	36	10	15365992	15365992	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001010924	exon2	c.C216T	p.G72G	.	.	.
KIAA1217	56243	hgsc.bcm.edu	36	10	24830436	24830436	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019590	exon9	c.G1957A	p.V653M	.	.	.
ARHGAP21	57584	hgsc.bcm.edu	36	10	24924686	24924686	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020824	exon19	c.C3678T	p.F1226F	.	.	.
MYO3A	53904	hgsc.bcm.edu	36	10	26482833	26482833	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017433	exon24	c.G2684A	p.R895K	.	.	.
MASTL	84930	hgsc.bcm.edu	36	10	27515389	27515389	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001172303	exon12	c.A2558G	p.Q853R	.	.	.
PFKP	5214	hgsc.bcm.edu	36	10	3162158	3162158	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002627	exon17	c.G1831A	p.D611N	.	.	.
ARHGAP12	94134	hgsc.bcm.edu	36	10	32137598	32137598	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018287	exon19	c.T2351C	p.F784S	.	.	.
PARD3	56288	hgsc.bcm.edu	36	10	34646216	34646216	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001184787	exon20	c.A2899G	p.S967G	.	.	.
MAPK8	5599	hgsc.bcm.edu	36	10	49287977	49287977	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002750	exon3	c.T302C	p.F101S	.	.	.
CHAT	1103	hgsc.bcm.edu	36	10	50542944	50542944	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142929	exon15	c.G1739A	p.S580N	.	.	.
PRKG1	5592	hgsc.bcm.edu	36	10	53492305	53492305	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006258	exon7	c.A843G	p.V281V	.	.	.
ANK3	288	hgsc.bcm.edu	36	10	61504737	61504737	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020987	exon37	c.A5908G	p.N1970D	.	.	.
RBM17	84991	hgsc.bcm.edu	36	10	6194318	6194318	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032905	exon8	c.G844A	p.A282T	.	.	.
EGR2	1959	hgsc.bcm.edu	36	10	64244113	64244113	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000399	exon2	c.C291A	p.S97S	.	.	.
LRRTM3	347731	hgsc.bcm.edu	36	10	68357203	68357203	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178011	exon2	c.C523T	p.R175X	.	.	.
TET1	80312	hgsc.bcm.edu	36	10	70096926	70096926	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030625	exon7	c.T4580C	p.L1527P	.	.	.
KIAA1274	27143	hgsc.bcm.edu	36	10	71955720	71955720	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014431	exon2	c.A7G	p.T3A	.	.	.
ADAMTS14	140766	hgsc.bcm.edu	36	10	72162018	72162018	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080722	exon7	c.T1105C	p.Y369H	.	.	.
NDST2	8509	hgsc.bcm.edu	36	10	75237167	75237167	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003635	exon3	c.T986C	p.M329T	.	.	.
CAMK2G	818	hgsc.bcm.edu	36	10	75255082	75255082	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_172171	exon14	c.A1020G	p.V340V	.	.	.
DLG5	9231	hgsc.bcm.edu	36	10	79265584	79265584	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004747	exon8	c.C1540A	p.Q514K	.	.	.
SFTPD	6441	hgsc.bcm.edu	36	10	81690473	81690473	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003019	exon7	c.A719G	p.H240R	.	.	.
SFTPD	6441	hgsc.bcm.edu	36	10	81692549	81692549	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003019	exon3	c.A266G	p.D89G	.	.	.
LARP4B	23185	hgsc.bcm.edu	36	10	880939	880939	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015155	exon5	c.A487C	p.T163P	.	.	.
KIF20B	9585	hgsc.bcm.edu	36	10	91487668	91487668	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016195	exon20	c.T2970C	p.G990G	.	.	.
ANKRD1	27063	hgsc.bcm.edu	36	10	92665293	92665293	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014391	exon8	c.A836G	p.N279S	.	.	.
TNKS2	80351	hgsc.bcm.edu	36	10	93609238	93609238	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025235	exon25	c.A3134G	p.D1045G	.	.	.
CPEB3	22849	hgsc.bcm.edu	36	10	93802129	93802129	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014912	exon10	c.C1917A	p.C639X	.	.	.
CYP2C9	1559	hgsc.bcm.edu	36	10	96688470	96688470	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000771	exon1	c.T41C	p.L14S	.	.	.
FBXL17	64839	hgsc.bcm.edu	36	5	107225336	107225336	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001163315	exon9	c.C2090G	p.S697C	.	.	.
MAN2A1	4124	hgsc.bcm.edu	36	5	109180878	109180878	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002372	exon13	c.T1949A	p.L650H	.	.	.
APC	324	hgsc.bcm.edu	36	5	112192515	112192515	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon12	c.C1636T	p.R546X	APC,large_intestine,NS,Substitution - Nonsense,0	.	.
APC	324	hgsc.bcm.edu	36	5	112206733	112206733	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon14	c.A7489G	p.I2497V	.	.	.
DTWD2	285605	hgsc.bcm.edu	36	5	118204572	118204572	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173666	exon6	c.T836C	p.M279T	.	.	.
SLC12A2	6558	hgsc.bcm.edu	36	5	127478203	127478203	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001046	exon4	c.G979A	p.A327T	.	.	.
SLC12A2	6558	hgsc.bcm.edu	36	5	127540711	127540711	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001046	exon21	c.G2945A	p.G982D	.	.	.
FBN2	2201	hgsc.bcm.edu	36	5	127709169	127709169	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001999	exon24	c.G2996A	p.R999H	.	.	.
CHSY3	337876	hgsc.bcm.edu	36	5	129548226	129548226	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_175856	exon3	c.A1492G	p.T498A	.	.	.
KDM3B	51780	hgsc.bcm.edu	36	5	137755624	137755624	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016604	exon8	c.C2404T	p.R802X	.	.	.
ANKHD1-EIF4EBP3	404734	hgsc.bcm.edu	36	5	139846744	139846744	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017747	exon14	c.G2160A	p.T720T	.	.	.
PCDHA1	56147	hgsc.bcm.edu	36	5	140146332	140146332	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031410	exon1	c.T273G	p.D91E	.	.	.
PCDHA4	56144	hgsc.bcm.edu	36	5	140167382	140167382	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031500	exon1	c.C426T	p.I142I	.	.	.
PCDHB2	56133	hgsc.bcm.edu	36	5	140454920	140454920	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018936	exon1	c.C362T	p.A121V	.	.	.
PCDHB3	56132	hgsc.bcm.edu	36	5	140460459	140460459	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018937	exon1	c.C42A	p.V14V	.	.	.
PCDHB12	56124	hgsc.bcm.edu	36	5	140570086	140570086	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018932	exon1	c.G1423A	p.A475T	.	.	.
PCDHGC4	56098	hgsc.bcm.edu	36	5	140845753	140845753	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032406	exon1	c.G829A	p.V277I	.	.	.
NR3C1	2908	hgsc.bcm.edu	36	5	142760571	142760571	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001018074	exon2	c.T27C	p.P9P	.	.	.
TRIO	7204	hgsc.bcm.edu	36	5	14340011	14340011	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007118	exon4	c.A379G	p.I127V	.	.	.
FAM105A	54491	hgsc.bcm.edu	36	5	14661885	14661885	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019018	exon7	c.A656G	p.Y219C	.	.	.
SYNPO	11346	hgsc.bcm.edu	36	5	150009790	150009790	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001166208	exon3	c.C2492T	p.A831V	.	.	.
GEMIN5	25929	hgsc.bcm.edu	36	5	154251406	154251406	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015465	exon26	c.C3850T	p.R1284C	.	.	.
GEMIN5	25929	hgsc.bcm.edu	36	5	154264296	154264296	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015465	exon18	c.G2596A	p.D866N	.	.	.
EBF1	1879	hgsc.bcm.edu	36	5	158067753	158067753	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024007	exon15	c.C1556T	p.P519L	.	.	.
RANBP17	64901	hgsc.bcm.edu	36	5	170276146	170276146	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022897	exon9	c.C907G	p.L303V	.	.	.
SQSTM1	8878	hgsc.bcm.edu	36	5	179183558	179183558	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142299	exon4	c.T144C	p.N48N	.	.	.
CDH10	1008	hgsc.bcm.edu	36	5	24527518	24527518	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006727	exon11	c.T1800A	p.A600A	.	.	.
TARS	6897	hgsc.bcm.edu	36	5	33493254	33493254	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152295	exon9	c.A973G	p.K325E	.	.	.
ADAMTS12	81792	hgsc.bcm.edu	36	5	33666738	33666738	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030955	exon13	c.C1926T	p.G642G	.	.	.
CDC20B	166979	hgsc.bcm.edu	36	5	54456457	54456457	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001170402	exon9	c.G1146A	p.W382X	.	.	.
ANKRD55	79722	hgsc.bcm.edu	36	5	55502317	55502317	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024669	exon5	c.G383A	p.R128H	.	.	.
CD180	4064	hgsc.bcm.edu	36	5	66528139	66528139	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005582	exon1	c.T87C	p.I29I	.	.	.
ACOT12	134526	hgsc.bcm.edu	36	5	80674285	80674285	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_130767	exon11	c.G1090T	p.A364S	.	.	.
CCNH	902	hgsc.bcm.edu	36	5	86744263	86744263	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001239	exon1	c.G105T	p.V35V	.	.	.
NR2F1	7025	hgsc.bcm.edu	36	5	92949575	92949575	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005654	exon2	c.C660T	p.C220C	.	.	.
TTC37	9652	hgsc.bcm.edu	36	5	94852455	94852455	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014639	exon37	c.G3844A	p.A1282T	.	.	.
SPATA9	83890	hgsc.bcm.edu	36	5	95020142	95020142	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031952	exon5	c.A706G	p.N236D	.	.	.
C10orf92	54777	hgsc.bcm.edu	36	10	134498258	134498258	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A01Q-01	TCGA-AA-A01Q-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	.	.	.	.	.	.	.
