Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
LHX1	3975	broad.mit.edu	36	17	32374507	32374508	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005568	exon5	c.1187_1188insC	p.H396fs	.	.	.
IL12RB1	3594	broad.mit.edu	36	19	18058705	18058706	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
ZNF425	155054	broad.mit.edu	36	7	148433565	148433565	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001001661	exon4	c.G331C	p.E111Q	.	.	.
EPB41L1	2036	broad.mit.edu	36	20	34260877	34260877	+	Silent	SNP	G	C	C	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012156	exon15	c.G1722C	p.R574R	.	.	.
SALL4	57167	broad.mit.edu	36	20	49841817	49841817	+	Silent	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020436	exon2	c.C612T	p.P204P	.	.	.
HAO1	54363	broad.mit.edu	36	20	7863152	7863152	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_017545	exon2	c.G268A	p.G90S	.	.	.
SPATA7	55812	broad.mit.edu	36	14	87969298	87969298	+	Silent	SNP	A	G	G	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040428	exon9	c.A1053G	p.L351L	.	.	.
MYBPC2	4606	broad.mit.edu	36	19	55650679	55650679	+	Silent	SNP	C	T	T	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004533	exon20	c.C2304T	p.I768I	.	.	.
NLRP12	91662	broad.mit.edu	36	19	59006071	59006071	+	Silent	SNP	C	T	T	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144687	exon3	c.G654A	p.A218A	.	.	.
ZNF329	79673	broad.mit.edu	36	19	63331305	63331305	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_024620	exon4	c.T1378C	p.C460R	.	.	.
UNC5D	137970	broad.mit.edu	36	8	35736421	35736421	+	Silent	SNP	G	T	T	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080872	exon14	c.G2205T	p.L735L	.	.	.
EYA1	2138	broad.mit.edu	36	8	72373919	72373919	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_172060	exon7	c.C644T	p.T215M	.	.	.
GDAP1	54332	broad.mit.edu	36	8	75436761	75436761	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018972	exon4	c.G572A	p.R191Q	.	.	.
GSTM5	2949	broad.mit.edu	36	1	110056488	110056488	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000851	exon1	c.C31T	p.R11C	.	.	.
HFE2	148738	broad.mit.edu	36	1	144126720	144126720	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_213653	exon3	c.C182A	p.A61E	.	.	.
SPTA1	6708	broad.mit.edu	36	1	156922915	156922915	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003126	exon1	c.A17G	p.K6R	.	.	.
OLFML2B	25903	broad.mit.edu	36	1	160220467	160220467	+	Silent	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015441	exon8	c.C1875T	p.D625D	.	.	.
LMX1A	4009	broad.mit.edu	36	1	163485328	163485328	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_177398	exon4	c.G437T	p.G146V	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184417946	184417946	+	Missense_Mutation	SNP	G	T	T	rs74136061	unknown	TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031935	exon105	c.G16318T	p.D5440Y	.	.	.
OR2T8	343172	broad.mit.edu	36	1	246151474	246151474	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005522	exon1	c.G532A	p.E178K	.	.	.
OR2T33	391195	broad.mit.edu	36	1	246503208	246503208	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004695	exon1	c.G532A	p.E178K	.	.	.
HHLA3	11147	broad.mit.edu	36	1	70604725	70604725	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001036645	exon2	c.C268T	p.R90W	.	.	.
TGFBR3	7049	broad.mit.edu	36	1	91957504	91957504	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001195683	exon10	c.A1516G	p.T506A	.	.	.
TECTA	7007	broad.mit.edu	36	11	120503936	120503936	+	Silent	SNP	C	T	T	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005422	exon8	c.C2040T	p.G680G	.	.	.
ACTN3	89	broad.mit.edu	36	11	66082159	66082159	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001104	exon11	c.G1214A	p.R405Q	.	.	.
GCNT2	2651	broad.mit.edu	36	6	10637824	10637824	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145649	exon3	c.G694A	p.V232I	.	.	.
GPR6	2830	broad.mit.edu	36	6	110407856	110407856	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005284	exon1	c.T848G	p.V283G	.	.	.
ECHDC1	55862	broad.mit.edu	36	6	127693821	127693821	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018479	exon2	c.A46G	p.K16E	.	.	.
UHRF1BP1	54887	broad.mit.edu	36	6	34934565	34934565	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_017754	exon14	c.G2454T	p.M818I	.	.	.
BTBD9	114781	broad.mit.edu	36	6	38250769	38250769	+	Silent	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172418	exon11	c.C1719T	p.N573N	.	.	.
MYH4	4622	broad.mit.edu	36	17	10294884	10294884	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_017533	exon29	c.C3919T	p.R1307X	.	.	.
MNT	4335	broad.mit.edu	36	17	2245383	2245383	+	Silent	SNP	T	G	G	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020310	exon2	c.A189C	p.P63P	.	.	.
ACCN1	40	broad.mit.edu	36	17	28372373	28372373	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_183377	exon7	c.C1418T	p.A473V	.	.	.
WNT3	7473	broad.mit.edu	36	17	42201031	42201031	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_030753	exon4	c.C892T	p.R298W	.	.	.
TTLL6	284076	broad.mit.edu	36	17	44218546	44218546	+	Silent	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130918	exon12	c.C1740T	p.A580A	.	.	.
CANT1	124583	broad.mit.edu	36	17	74501371	74501371	+	Silent	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001159773	exon5	c.C1062T	p.D354D	.	.	.
TP53	7157	broad.mit.edu	36	17	7519259	7519259	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126114	exon5	c.G396C	p.K132N	TP53,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.
IFT140	9742	broad.mit.edu	36	16	1554065	1554065	+	Silent	SNP	C	T	T	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014714	exon17	c.G2001A	p.Q667Q	.	.	.
MYH11	4629	broad.mit.edu	36	16	15783748	15783748	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001040114	exon7	c.C742T	p.R248X	.	.	.
L3MBTL4	91133	broad.mit.edu	36	18	6234486	6234486	+	Silent	SNP	C	T	T	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173464	exon6	c.G321A	p.A107A	.	.	.
PARP15	165631	broad.mit.edu	36	3	123818637	123818637	+	Silent	SNP	T	C	C	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152615	exon2	c.T234C	p.D78D	.	.	.
DNAJC13	23317	broad.mit.edu	36	3	133654856	133654856	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015268	exon7	c.G562A	p.E188K	.	.	.
CNTN6	27255	broad.mit.edu	36	3	1400058	1400058	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014461	exon19	c.G2483T	p.W828L	.	.	.
P2RY14	9934	broad.mit.edu	36	3	152414344	152414344	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014879	exon3	c.C451A	p.L151I	.	.	.
OTOL1	131149	broad.mit.edu	36	3	162704281	162704281	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080440	exon4	c.G1291A	p.V431I	.	.	.
PIK3CA	5290	broad.mit.edu	36	3	180418785	180418785	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006218	exon10	c.G1633A	p.E545K	PIK3CA,urinary_tract,bladder,Substitution - Missense,0	.	.
RBMS3	27303	broad.mit.edu	36	3	29603660	29603660	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001003793	exon4	c.C359A	p.A120E	.	.	.
SUSD5	26032	broad.mit.edu	36	3	33224329	33224329	+	Nonsense_Mutation	SNP	G	C	C	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015551	exon3	c.C384G	p.Y128X	.	.	.
PROK2	60675	broad.mit.edu	36	3	71904638	71904638	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126128	exon4	c.C317T	p.T106I	.	.	.
GABRR3	200959	broad.mit.edu	36	3	99188389	99188389	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105580	exon9	c.C1232T	p.S411L	.	.	.
RIMBP2	23504	broad.mit.edu	36	12	129493093	129493093	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015347	exon8	c.G706A	p.E236K	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289552	25289552	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004985	exon2	c.G34T	p.G12C	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,+1	.	.
OR6C6	283365	broad.mit.edu	36	12	53974920	53974920	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005493	exon1	c.G364A	p.V122I	.	.	.
OR10P1	121130	broad.mit.edu	36	12	54317762	54317762	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206899	exon1	c.G820A	p.V274I	.	.	.
WNK1	65125	broad.mit.edu	36	12	806679	806679	+	Silent	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184985	exon3	c.G1143A	p.K381K	.	.	.
TRPM1	4308	broad.mit.edu	36	15	29106472	29106472	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002420	exon25	c.G3368A	p.R1123H	.	.	.
VPS13C	54832	broad.mit.edu	36	15	59988526	59988526	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_017684	exon63	c.A8806G	p.I2936V	.	.	.
DPP8	54878	broad.mit.edu	36	15	63533796	63533796	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_197960	exon18	c.A2177C	p.E726A	.	.	.
SCAMP5	192683	broad.mit.edu	36	15	73095989	73095989	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001178111	exon5	c.A139G	p.N47D	.	.	.
BNC1	646	broad.mit.edu	36	15	81723669	81723669	+	Silent	SNP	C	T	T	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001717	exon4	c.G1338A	p.T446T	.	.	.
FGG	2266	broad.mit.edu	36	4	155749211	155749211	+	Silent	SNP	T	C	C	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021870	exon7	c.A708G	p.Q236Q	.	.	.
REST	5978	broad.mit.edu	36	4	57492791	57492791	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193508	exon4	c.G3010A	p.E1004K	.	.	.
CXorf57	55086	broad.mit.edu	36	X	105778249	105778249	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018015	exon11	c.C1955T	p.P652L	.	.	.
CHRDL1	91851	broad.mit.edu	36	X	109806202	109806202	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143981	exon12	c.G1290T	p.Q430H	.	.	.
RPL39	6170	broad.mit.edu	36	X	118807975	118807975	+	Silent	SNP	G	T	T	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001000	exon2	c.C31A	p.R11R	.	.	.
TLR7	51284	broad.mit.edu	36	X	12815765	12815765	+	Silent	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016562	exon3	c.G2217A	p.T739T	.	.	.
MAP7D3	79649	broad.mit.edu	36	X	135155919	135155919	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001173517	exon3	c.G224A	p.R75H	.	.	.
VGLL1	51442	broad.mit.edu	36	X	135458754	135458754	+	Silent	SNP	C	T	T	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016267	exon3	c.C555T	p.A185A	.	.	.
CXorf1	9142	broad.mit.edu	36	X	144717039	144717039	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004709	exon1	c.C152T	p.S51L	.	.	.
CNGA2	1260	broad.mit.edu	36	X	150662256	150662256	+	Nonsense_Mutation	SNP	A	T	T	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005140	exon7	c.A625T	p.K209X	.	.	.
AVPR2	554	broad.mit.edu	36	X	152824759	152824759	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000054	exon2	c.G605A	p.R202H	.	.	.
DLG3	1741	broad.mit.edu	36	X	69587351	69587351	+	Silent	SNP	C	T	T	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021120	exon6	c.C978T	p.Y326Y	.	.	.
MAGEE1	57692	broad.mit.edu	36	X	75565865	75565865	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020932	exon1	c.G1138A	p.V380M	.	.	.
PGK1	5230	broad.mit.edu	36	X	77267944	77267944	+	Silent	SNP	T	G	G	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000291	exon11	c.T1215G	p.G405G	.	.	.
PXDN	7837	broad.mit.edu	36	2	1636526	1636526	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_012293	exon16	c.G1985A	p.R662Q	.	.	.
SCN9A	6335	broad.mit.edu	36	2	166846508	166846508	+	Silent	SNP	C	T	T	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002977	exon13	c.G1998A	p.E666E	.	.	.
PAX3	5077	broad.mit.edu	36	2	222870067	222870067	+	Silent	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000438	exon2	c.C195T	p.H65H	.	.	.
SH3YL1	26751	broad.mit.edu	36	2	224162	224162	+	Silent	SNP	T	C	C	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015677	exon5	c.A402G	p.G134G	.	.	.
C2orf70	339778	broad.mit.edu	36	2	26655773	26655773	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105519	exon4	c.G569A	p.R190Q	.	.	.
CLIP4	79745	broad.mit.edu	36	2	29210096	29210096	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_024692	exon5	c.C439T	p.R147C	.	.	.
CTNNA2	1496	broad.mit.edu	36	2	79954832	79954832	+	Silent	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004389	exon6	c.G708A	p.T236T	.	.	.
COL15A1	1306	broad.mit.edu	36	9	100857457	100857457	+	Silent	SNP	C	T	T	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001855	exon34	c.C3174T	p.P1058P	.	.	.
TPRN	286262	broad.mit.edu	36	9	139206846	139206848	+	In_Frame_Del	DEL	TCC	-	-	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128228	exon2	c.1842_1844del	p.614_615del	.	.	.
PCDH17	27253	broad.mit.edu	36	13	57104751	57104751	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001040429	exon1	c.T70C	p.S24P	.	.	.
SLITRK1	114798	broad.mit.edu	36	13	83352597	83352597	+	Silent	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052910	exon1	c.C1047T	p.H349H	.	.	.
ABI1	10006	broad.mit.edu	36	10	27152149	27152149	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001178124	exon2	c.A209G	p.N70S	.	.	.
POLR3A	11128	broad.mit.edu	36	10	79455943	79455943	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_007055	exon2	c.C95T	p.A32V	.	.	.
BTAF1	9044	broad.mit.edu	36	10	93701176	93701176	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003972	exon5	c.G437A	p.R146Q	.	.	.
KIF11	3832	broad.mit.edu	36	10	94362844	94362844	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004523	exon7	c.G766A	p.V256I	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13938265	13938265	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001369	exon19	c.C2816T	p.T939M	.	.	.
PCDHA7	56141	broad.mit.edu	36	5	140196076	140196076	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_018910	exon1	c.G1924A	p.A642T	.	.	.
PCDHGA2	56113	broad.mit.edu	36	5	140699326	140699326	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_032009	exon1	c.C604A	p.R202S	.	.	.
FOXI1	2299	broad.mit.edu	36	5	169467638	169467638	+	Silent	SNP	G	T	T	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012188	exon2	c.G582T	p.G194G	.	.	.
FBXW11	23291	broad.mit.edu	36	5	171274002	171274002	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_033644	exon2	c.A58G	p.M20V	.	.	.
NDUFS6	4726	broad.mit.edu	36	5	1868980	1868980	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004553	exon4	c.A325G	p.T109A	.	.	.
EDIL3	10085	broad.mit.edu	36	5	83396409	83396409	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A03J-01	TCGA-AA-A03J-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005711	exon8	c.G818A	p.G273E	.	.	.
