Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
WNK3	65267	hgsc.bcm.edu	36	X	54241715	54241716	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001002838	exon23	c.4999_5000insA	p.L1667fs	.	.	.
IFRD1	3475	hgsc.bcm.edu	36	7	111899511	111899511	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001550	exon10	c.A1043G	p.E348G	.	.	.
PPP1R3A	5506	hgsc.bcm.edu	36	7	113309556	113309556	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002711	exon2	c.A838G	p.T280A	.	.	.
FAM71F1	84691	hgsc.bcm.edu	36	7	128146325	128146325	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032599	exon3	c.G639A	p.T213T	.	.	.
NOM1	64434	hgsc.bcm.edu	36	7	156447624	156447624	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_138400	exon5	c.A1651G	p.T551A	.	.	.
TRIM73	375593	hgsc.bcm.edu	36	7	74870951	74870951	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198924	exon3	c.C487T	p.R163X	.	.	.
C7orf51	222950	hgsc.bcm.edu	36	7	99923803	99923803	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173564	exon4	c.T523C	p.S175P	.	.	.
DIDO1	11083	hgsc.bcm.edu	36	20	61012957	61012957	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022105	exon3	c.C453T	p.T151T	.	.	.
DNMT1	1786	hgsc.bcm.edu	36	19	10152152	10152152	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001130823	exon4	c.C319G	p.L107V	.	.	.
CALR	811	hgsc.bcm.edu	36	19	12912137	12912137	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004343	exon5	c.G573C	p.V191V	.	.	.
SIN3B	23309	hgsc.bcm.edu	36	19	16823243	16823243	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015260	exon6	c.C747T	p.C249C	.	.	.
ZNF569	148266	hgsc.bcm.edu	36	19	42596445	42596445	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152484	exon6	c.G955T	p.V319F	.	.	.
SIGLEC12	89858	hgsc.bcm.edu	36	19	56696479	56696479	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_053003	exon1	c.C321A	p.S107R	.	.	.
ZNF160	90338	hgsc.bcm.edu	36	19	58263449	58263449	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_198893	exon7	c.G2150C	p.R717P	.	.	.
NLRP4	147945	hgsc.bcm.edu	36	19	61062320	61062320	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_134444	exon3	c.C1749T	p.N583N	.	.	.
ENPP2	5168	hgsc.bcm.edu	36	8	120650667	120650667	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001130863	exon22	c.T2117C	p.L706P	.	.	.
TRPA1	8989	hgsc.bcm.edu	36	8	73131805	73131805	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007332	exon10	c.T1095G	p.G365G	.	.	.
MMP16	4325	hgsc.bcm.edu	36	8	89249111	89249111	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005941	exon4	c.A612G	p.G204G	.	.	.
GPR89A	653519	hgsc.bcm.edu	36	1	144476738	144476738	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001097613	exon14	c.A1074G	p.L358L	.	.	.
SLC9A11	284525	hgsc.bcm.edu	36	1	171772788	171772788	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_178527	exon14	c.A1571C	p.K524T	.	.	.
PAX7	5081	hgsc.bcm.edu	36	1	18890904	18890904	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_013945	exon5	c.G650A	p.R217H	.	.	.
PLA2G5	5322	hgsc.bcm.edu	36	1	20288956	20288956	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000929	exon4	c.G273A	p.A91A	.	.	.
SLC26A9	115019	hgsc.bcm.edu	36	1	204163289	204163289	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_134325	exon10	c.C1169T	p.A390V	.	.	.
PIK3R3	8503	hgsc.bcm.edu	36	1	46284177	46284177	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003629	exon9	c.T1187C	p.V396A	.	.	.
LPPR4	9890	hgsc.bcm.edu	36	1	99544116	99544116	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014839	exon7	c.G1254A	p.P418P	.	.	.
BCL9L	283149	hgsc.bcm.edu	36	11	118277903	118277903	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_182557	exon6	c.C1759T	p.Q587X	.	.	.
PRDM11	56981	hgsc.bcm.edu	36	11	45202541	45202541	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020229	exon8	c.G1042A	p.E348K	.	.	.
PEX3	8504	hgsc.bcm.edu	36	6	143833852	143833852	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003630	exon5	c.C393T	p.V131V	.	.	.
DCDC2	51473	hgsc.bcm.edu	36	6	24386359	24386359	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001195610	exon8	c.C819T	p.P273P	.	.	.
KRT20	54474	hgsc.bcm.edu	36	17	36292400	36292400	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_019010	exon2	c.T423C	p.C141C	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7518937	7518937	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon6	c.C637T	p.R213X	TP53,central_nervous_system,brain,Substitution - Missense,+1	.	.
CDH8	1006	hgsc.bcm.edu	36	16	60412386	60412386	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001796	exon6	c.T968A	p.L323H	.	.	.
SF3B3	23450	hgsc.bcm.edu	36	16	69156661	69156661	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_012426	exon19	c.G2656A	p.E886K	.	.	.
SLC9A10	285335	hgsc.bcm.edu	36	3	113432910	113432910	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_183061	exon13	c.G1560C	p.L520F	.	.	.
SLC7A14	57709	hgsc.bcm.edu	36	3	171681126	171681126	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020949	exon7	c.C1639T	p.R547W	.	.	.
NLGN1	22871	hgsc.bcm.edu	36	3	175481776	175481776	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014932	exon7	c.A2461T	p.T821S	.	.	.
MYRIP	25924	hgsc.bcm.edu	36	3	40250436	40250436	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015460	exon12	c.C1988T	p.S663F	.	.	.
CYP8B1	1582	hgsc.bcm.edu	36	3	42891267	42891267	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004391	exon1	c.G1046A	p.R349Q	.	.	.
TGM4	7047	hgsc.bcm.edu	36	3	44918365	44918365	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003241	exon8	c.G909A	p.T303T	.	.	.
COL7A1	1294	hgsc.bcm.edu	36	3	48583300	48583300	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000094	exon94	c.C7270T	p.R2424W	.	.	.
P2RX7	5027	hgsc.bcm.edu	36	12	120088351	120088351	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002562	exon7	c.A722G	p.N241S	.	.	.
KRAS	3845	hgsc.bcm.edu	36	12	25289548	25289548	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004985	exon2	c.G38A	p.G13D	KRAS,lung,NS,Substitution - Missense,-1	.	.
TPH2	121278	hgsc.bcm.edu	36	12	70711738	70711738	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173353	exon11	c.T1469C	p.I490T	.	.	.
ANO4	121601	hgsc.bcm.edu	36	12	99955055	99955055	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_178826	exon9	c.A788C	p.H263P	.	.	.
UBR1	197131	hgsc.bcm.edu	36	15	41095247	41095247	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_174916	exon29	c.C3140G	p.T1047S	.	.	.
LBXCOR1	390598	hgsc.bcm.edu	36	15	65909634	65909634	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001031807	exon5	c.A2327T	p.K776I	.	.	.
PDLIM5	10611	hgsc.bcm.edu	36	4	95725906	95725906	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001011513	exon6	c.A551G	p.E184G	.	.	.
ODZ1	10178	hgsc.bcm.edu	36	X	123523295	123523295	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014253	exon14	c.G2341T	p.G781C	.	.	.
SMARCA1	6594	hgsc.bcm.edu	36	X	128461422	128461422	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003069	exon10	c.T1245G	p.I415M	.	.	.
CNKSR2	22866	hgsc.bcm.edu	36	X	21444610	21444610	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001168647	exon9	c.C897G	p.S299R	.	.	.
RBM10	8241	hgsc.bcm.edu	36	X	46929485	46929485	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005676	exon18	c.C2038T	p.R680X	.	.	.
RBM3	5935	hgsc.bcm.edu	36	X	48319924	48319924	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006743	exon5	c.A401T	p.D134V	.	.	.
HUWE1	10075	hgsc.bcm.edu	36	X	53659488	53659488	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_031407	exon22	c.A1991T	p.D664V	.	.	.
CYLC1	1538	hgsc.bcm.edu	36	X	83015638	83015638	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021118	exon4	c.A1266G	p.E422E	.	.	.
ATP6V1E2	90423	hgsc.bcm.edu	36	2	46592945	46592945	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_080653	exon2	c.G410A	p.R137Q	.	.	.
ASTN2	23245	hgsc.bcm.edu	36	9	118422501	118422501	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_198186	exon3	c.A418G	p.K140E	.	.	.
TAF1L	138474	hgsc.bcm.edu	36	9	32620351	32620351	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_153809	exon1	c.G5227T	p.D1743Y	.	.	.
SGCG	6445	hgsc.bcm.edu	36	13	22767602	22767602	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000231	exon6	c.G554T	p.R185I	.	.	.
GBF1	8729	hgsc.bcm.edu	36	10	104111542	104111542	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001199378	exon14	c.G1569A	p.L523L	.	.	.
OGDHL	55753	hgsc.bcm.edu	36	10	50616059	50616059	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001143996	exon18	c.C2286T	p.S762S	.	.	.
HELLS	3070	hgsc.bcm.edu	36	10	96343335	96343335	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018063	exon18	c.T2061C	p.D687D	.	.	.
PSD2	84249	hgsc.bcm.edu	36	5	139173166	139173166	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032289	exon3	c.C460T	p.Q154X	.	.	.
FBXO38	81545	hgsc.bcm.edu	36	5	147800932	147800932	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_205836	exon21	c.G3327A	p.R1109R	.	.	.
GZMK	3003	hgsc.bcm.edu	36	5	54365356	54365356	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AF-2689-01	TCGA-AF-2689-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002104	exon5	c.T640A	p.S214T	.	.	.
