Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
TMEM168	64418	broad.mit.edu	36	7	112211941	112211942	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022484	exon2	c.176_177insA	p.T59fs	.	.	.
KLF14	136259	broad.mit.edu	36	7	130069084	130069085	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138693	exon1	c.317_318insG	p.E106fs	.	.	.
KCNH2	3757	broad.mit.edu	36	7	150287611	150287612	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000238	exon3	c.454_455insC	p.T152fs	.	.	.
ZNF395	55893	broad.mit.edu	36	8	28266727	28266728	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018660	exon5	c.701_702insC	p.H234fs	.	.	.
BCL2L12	83596	broad.mit.edu	36	19	54862167	54862168	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138639	exon3	c.439_440insC	p.A147fs	.	.	.
IL4I1	259307	broad.mit.edu	36	19	55086160	55086161	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152899	exon7	c.653_654insG	p.E218fs	.	.	.
PRPF38B	55119	broad.mit.edu	36	1	109043978	109043979	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018061	exon6	c.1454_1455insA	p.S485fs	.	.	.
CHIT1	1118	broad.mit.edu	36	1	201452771	201452772	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003465	exon11	c.1270_1271insA	p.A424fs	.	.	.
GNPAT	8443	broad.mit.edu	36	1	229474716	229474717	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014236	exon11	c.1558_1559insT	p.V520fs	.	.	.
ATAT1	79969	broad.mit.edu	36	6	30718735	30718736	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001190724	exon9	c.831_832insG	p.P277fs	.	.	.
INPPL1	3636	broad.mit.edu	36	11	71625856	71625857	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001567	exon26	c.2920_2921insC	p.A974fs	.	.	.
C21orf91	54149	broad.mit.edu	36	21	18090836	18090837	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017447	exon3	c.598_599insA	p.E200fs	.	.	.
CNDP2	55748	broad.mit.edu	36	18	70331791	70331792	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018235	exon8	c.760_761insG	p.R254fs	.	.	.
SENP5	205564	broad.mit.edu	36	3	198096452	198096453	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152699	exon2	c.3_4insA	p.M1fs	.	.	.
PTPN23	25930	broad.mit.edu	36	3	47427325	47427326	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015466	exon20	c.3033_3034insC	p.P1011fs	.	.	.
CPXCR1	53336	broad.mit.edu	36	X	87895351	87895352	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033048	exon3	c.280_281insC	p.T94fs	.	.	.
SYK	6850	broad.mit.edu	36	9	92647609	92647610	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001174167	exon3	c.490_491insA	p.E164fs	.	.	.
NET1	10276	broad.mit.edu	36	10	5488667	5488668	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005863	exon10	c.1339_1340insC	p.A447fs	.	.	.
APAF1	317	broad.mit.edu	36	12	97588996	97588997	+	Splice_Site	INS	-	TA	TA	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
ZAN	7455	broad.mit.edu	36	7	100199622	100199622	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173059	exon22	c.C4134T	p.F1378F	.	.	.
EPHB4	2050	broad.mit.edu	36	7	100243042	100243042	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004444	exon13	c.C2215T	p.R739X	.	.	.
TRIM56	81844	broad.mit.edu	36	7	100518033	100518033	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030961	exon3	c.G720A	p.A240A	.	.	.
FIS1	51024	broad.mit.edu	36	7	100670155	100670155	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016068	exon4	c.G349T	p.A117S	.	.	.
CDHR3	222256	broad.mit.edu	36	7	105429152	105429152	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152750	exon7	c.G722A	p.R241Q	.	.	.
CDHR3	222256	broad.mit.edu	36	7	105440554	105440554	+	Silent	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152750	exon9	c.G1065T	p.P355P	.	.	.
GPR146	115330	broad.mit.edu	36	7	1064472	1064472	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138445	exon1	c.C795T	p.P265P	.	.	.
DLD	1738	broad.mit.edu	36	7	107343377	107343377	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000108	exon9	c.C875T	p.S292F	.	.	.
LAMB4	22798	broad.mit.edu	36	7	107458603	107458603	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007356	exon32	c.G4876T	p.G1626W	.	.	.
LAMB4	22798	broad.mit.edu	36	7	107533695	107533695	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007356	exon8	c.A673G	p.N225D	.	.	.
TFEC	22797	broad.mit.edu	36	7	115369323	115369323	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018058	exon6	c.C436T	p.R146C	.	.	.
CFTR	1080	broad.mit.edu	36	7	117054815	117054815	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000492	exon22	c.C3472T	p.R1158X	.	.	.
KCND2	3751	broad.mit.edu	36	7	119702378	119702378	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012281	exon1	c.G456A	p.A152A	.	.	.
AASS	10157	broad.mit.edu	36	7	121560852	121560852	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005763	exon2	c.C165T	p.Y55Y	.	.	.
TMEM106B	54664	broad.mit.edu	36	7	12235967	12235967	+	Silent	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134232	exon5	c.A579G	p.K193K	.	.	.
ASB15	142685	broad.mit.edu	36	7	123054421	123054421	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080928	exon7	c.C719T	p.A240V	.	.	.
FLNC	2318	broad.mit.edu	36	7	128275319	128275319	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001458	exon26	c.C4541T	p.T1514M	.	.	.
EPHA1	2041	broad.mit.edu	36	7	142808555	142808555	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005232	exon3	c.G416A	p.R139Q	.	.	.
CUL1	8454	broad.mit.edu	36	7	148127359	148127359	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003592	exon21	c.C2196T	p.G732G	.	.	.
LOC155060	155060	broad.mit.edu	36	7	148594468	148594468	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001195220	exon2	c.C134T	p.T45M	.	.	.
LOC155060	155060	broad.mit.edu	36	7	148594577	148594577	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001195220	exon2	c.C243T	p.C81C	.	.	.
ZNF746	155061	broad.mit.edu	36	7	148802443	148802443	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001163474	exon7	c.A1903G	p.S635G	.	.	.
INTS1	26173	broad.mit.edu	36	7	1493177	1493177	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080453	exon21	c.C2733T	p.C911C	.	.	.
INTS1	26173	broad.mit.edu	36	7	1506464	1506464	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080453	exon4	c.C414T	p.I138I	.	.	.
NUB1	51667	broad.mit.edu	36	7	150696880	150696880	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016118	exon11	c.G1222A	p.A408T	.	.	.
ANKMY2	57037	broad.mit.edu	36	7	16616791	16616791	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020319	exon6	c.G654T	p.L218F	.	.	.
AHR	196	broad.mit.edu	36	7	17345167	17345167	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001621	exon10	c.G1193A	p.R398Q	.	.	.
HDAC9	9734	broad.mit.edu	36	7	18768335	18768335	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178423	exon15	c.G2065T	p.E689X	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21822687	21822687	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003777	exon64	c.C10432T	p.R3478X	.	.	.
STK31	56164	broad.mit.edu	36	7	23775876	23775876	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001122833	exon13	c.C1620T	p.C540C	.	.	.
TTYH3	80727	broad.mit.edu	36	7	2655736	2655736	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025250	exon6	c.G732A	p.L244L	.	.	.
HOXA6	3203	broad.mit.edu	36	7	27153512	27153512	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024014	exon1	c.G382A	p.A128T	.	.	.
CARD11	84433	broad.mit.edu	36	7	2943270	2943270	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032415	exon9	c.G1268A	p.R423Q	.	.	.
FKBP14	55033	broad.mit.edu	36	7	30032490	30032490	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017946	exon1	c.G160T	p.G54C	.	.	.
ADCYAP1R1	117	broad.mit.edu	36	7	31071020	31071020	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199636	exon3	c.T100C	p.C34R	.	.	.
AVL9	23080	broad.mit.edu	36	7	32559875	32559875	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015060	exon7	c.C541T	p.R181X	.	.	.
NPSR1	387129	broad.mit.edu	36	7	34840544	34840544	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207172	exon6	c.G704A	p.R235Q	.	.	.
AMPH	273	broad.mit.edu	36	7	38469114	38469114	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139316	exon10	c.C874T	p.R292W	.	.	.
POLM	27434	broad.mit.edu	36	7	44080295	44080295	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013284	exon8	c.C1031T	p.A344V	.	.	.
ADCY1	107	broad.mit.edu	36	7	45684308	45684308	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021116	exon10	c.G1819A	p.E607K	.	.	.
GRB10	2887	broad.mit.edu	36	7	50640493	50640493	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001549	exon11	c.C1239T	p.G413G	.	.	.
ASL	435	broad.mit.edu	36	7	65185587	65185587	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001024944	exon5	c.G437A	p.R146Q	.	.	.
C7orf42	55069	broad.mit.edu	36	7	66055760	66055760	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017994	exon6	c.G893A	p.R298H	.	.	.
NSUN5	55695	broad.mit.edu	36	7	72356308	72356308	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001168347	exon7	c.G789A	p.R263R	.	.	.
GTF2IRD1	9569	broad.mit.edu	36	7	73571865	73571865	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005685	exon6	c.G796A	p.A266T	.	.	.
GTF2IRD2	84163	broad.mit.edu	36	7	73850371	73850371	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173537	exon16	c.G1416A	p.K472K	.	.	.
GLCCI1	113263	broad.mit.edu	36	7	8028693	8028693	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138426	exon3	c.C665T	p.A222V	.	.	.
SUN1	23353	broad.mit.edu	36	7	849652	849652	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130965	exon5	c.G627A	p.S209S	.	.	.
FZD1	8321	broad.mit.edu	36	7	90733482	90733482	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003505	exon1	c.G1351A	p.A451T	.	.	.
AKAP9	10142	broad.mit.edu	36	7	91545084	91545084	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_147185	exon30	c.A6880G	p.T2294A	.	.	.
DLX5	1749	broad.mit.edu	36	7	96491734	96491734	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005221	exon1	c.C138T	p.D46D	.	.	.
TRRAP	8295	broad.mit.edu	36	7	98328068	98328068	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003496	exon5	c.T347C	p.V116A	.	.	.
TRRAP	8295	broad.mit.edu	36	7	98371227	98371227	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003496	exon28	c.G4104A	p.A1368A	.	.	.
ZKSCAN5	23660	broad.mit.edu	36	7	98967050	98967050	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145102	exon7	c.C1762A	p.Q588K	.	.	.
ZSCAN21	7589	broad.mit.edu	36	7	99499670	99499670	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145914	exon4	c.G916A	p.V306M	.	.	.
PLOD3	8985	broad.mit.edu	36	7	100642647	100642647	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001084	exon9	c.889delC	p.R297fs	.	.	.
CUX1	1523	broad.mit.edu	36	7	101632024	101632024	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181552	exon18	c.2727delC	p.S909fs	.	.	.
SMO	6608	broad.mit.edu	36	7	128639240	128639240	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005631	exon12	c.2076delC	p.H692fs	.	.	.
PAXIP1	22976	broad.mit.edu	36	7	154391068	154391068	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007349	exon7	c.1776delT	p.F592fs	.	.	.
CDCA7L	55536	broad.mit.edu	36	7	21909240	21909240	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127371	exon8	c.1077delC	p.P359fs	.	.	.
TRIL	9865	broad.mit.edu	36	7	28963007	28963007	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014817	exon1	c.1181delC	p.P394fs	.	.	.
SLC29A4	222962	broad.mit.edu	36	7	5297338	5297340	+	In_Frame_Del	DEL	TCC	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153247	exon4	c.359_361del	p.120_121del	.	.	.
ISM1	140862	broad.mit.edu	36	20	13208508	13208508	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080826	exon3	c.C606T	p.G202G	.	.	.
KIF16B	55614	broad.mit.edu	36	20	16285027	16285027	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024704	exon23	c.G3569A	p.R1190H	.	.	.
C20orf26	26074	broad.mit.edu	36	20	20205861	20205861	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015585	exon22	c.C2555T	p.T852M	.	.	.
TMEM90B	79953	broad.mit.edu	36	20	24513507	24513507	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024893	exon3	c.G496A	p.D166N	.	.	.
NINL	22981	broad.mit.edu	36	20	25441496	25441496	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025176	exon4	c.C424T	p.R142C	.	.	.
HCK	3055	broad.mit.edu	36	20	30126163	30126163	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172129	exon5	c.G343A	p.V115I	.	.	.
TM9SF4	9777	broad.mit.edu	36	20	30192981	30192981	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014742	exon4	c.C250T	p.R84W	.	.	.
C20orf112	140688	broad.mit.edu	36	20	30504408	30504408	+	Silent	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080616	exon6	c.T828C	p.C276C	.	.	.
DNMT3B	1789	broad.mit.edu	36	20	30831601	30831601	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175850	exon1	c.C19A	p.P7T	.	.	.
MAPRE1	22919	broad.mit.edu	36	20	30877499	30877499	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012325	exon2	c.C105T	p.I35I	.	.	.
EPB41L1	2036	broad.mit.edu	36	20	34273680	34273680	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012156	exon21	c.G2587A	p.V863I	.	.	.
DLGAP4	22839	broad.mit.edu	36	20	34558555	34558555	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_183006	exon2	c.C65T	p.P22L	.	.	.
MYL9	10398	broad.mit.edu	36	20	34606741	34606741	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006097	exon2	c.C40T	p.R14W	.	.	.
BLCAP	10904	broad.mit.edu	36	20	35580873	35580873	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001167821	exon2	c.C118T	p.R40W	.	.	.
SIGLEC1	6614	broad.mit.edu	36	20	3625788	3625788	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023068	exon9	c.G2324A	p.R775H	.	.	.
SIGLEC1	6614	broad.mit.edu	36	20	3632491	3632491	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023068	exon4	c.C954T	p.P318P	.	.	.
FAM83D	81610	broad.mit.edu	36	20	37014442	37014442	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030919	exon4	c.G1713A	p.R571R	.	.	.
LPIN3	64900	broad.mit.edu	36	20	39408036	39408036	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022896	exon2	c.C179T	p.S60L	.	.	.
CHD6	84181	broad.mit.edu	36	20	39467223	39467223	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032221	exon37	c.C7572T	p.G2524G	.	.	.
CHD6	84181	broad.mit.edu	36	20	39514928	39514928	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032221	exon21	c.C3189T	p.D1063D	.	.	.
SGK2	10110	broad.mit.edu	36	20	41629738	41629738	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170693	exon4	c.G106A	p.D36N	.	.	.
JPH2	57158	broad.mit.edu	36	20	42221893	42221893	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020433	exon2	c.C948T	p.G316G	.	.	.
HNF4A	3172	broad.mit.edu	36	20	42468144	42468144	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001030003	exon2	c.G82A	p.A28T	.	.	.
HNF4A	3172	broad.mit.edu	36	20	42491609	42491609	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001030003	exon10	c.G1219T	p.G407C	.	.	.
PABPC1L	80336	broad.mit.edu	36	20	42992608	42992608	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001124756	exon8	c.C1066T	p.R356C	.	.	.
WFDC6	140870	broad.mit.edu	36	20	43600119	43600119	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080827	exon2	c.C120T	p.C40C	.	.	.
MMP9	4318	broad.mit.edu	36	20	44073327	44073327	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004994	exon5	c.A788G	p.D263G	.	.	.
MMP9	4318	broad.mit.edu	36	20	44074508	44074508	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004994	exon8	c.G1210A	p.G404S	.	.	.
SLC2A10	81031	broad.mit.edu	36	20	44788090	44788090	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030777	exon2	c.C1008T	p.T336T	.	.	.
PREX1	57580	broad.mit.edu	36	20	46675849	46675849	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020820	exon40	c.C4961T	p.P1654L	.	.	.
PROKR2	128674	broad.mit.edu	36	20	5230914	5230914	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144773	exon2	c.G927A	p.K309K	.	.	.
BMP7	655	broad.mit.edu	36	20	55192248	55192248	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001719	exon4	c.C895T	p.R299C	.	.	.
CDH4	1002	broad.mit.edu	36	20	59861292	59861292	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001794	exon6	c.C820T	p.R274C	.	.	.
CDH4	1002	broad.mit.edu	36	20	59903373	59903373	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001794	exon8	c.T1063G	p.Y355D	.	.	.
CDH4	1002	broad.mit.edu	36	20	59936812	59936812	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001794	exon12	c.C1941T	p.Y647Y	.	.	.
ZNF512B	57473	broad.mit.edu	36	20	62069215	62069215	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020713	exon3	c.G227A	p.R76Q	.	.	.
PAK7	57144	broad.mit.edu	36	20	9494574	9494574	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_177990	exon5	c.G1448A	p.R483Q	.	.	.
ESF1	51575	broad.mit.edu	36	20	13711275	13711275	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016649	exon2	c.512delA	p.N171fs	.	.	.
CD93	22918	broad.mit.edu	36	20	23014469	23014469	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012072	exon1	c.361delG	p.E121fs	.	.	.
PTPRT	11122	broad.mit.edu	36	20	40853344	40853344	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133170	exon3	c.391delC	p.Q131fs	.	.	.
TECPR2	9895	broad.mit.edu	36	14	101961140	101961140	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014844	exon6	c.G710A	p.R237Q	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104476289	104476289	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138420	exon7	c.C16544T	p.S5515L	.	.	.
ARHGEF40	55701	broad.mit.edu	36	14	20618890	20618890	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018071	exon13	c.C2515T	p.R839W	.	.	.
LRP10	26020	broad.mit.edu	36	14	22416501	22416501	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014045	exon7	c.C2067T	p.D689D	.	.	.
MYH6	4624	broad.mit.edu	36	14	22921537	22921537	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002471	exon38	c.G5736A	p.A1912A	.	.	.
MYH6	4624	broad.mit.edu	36	14	22925045	22925045	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002471	exon34	c.C5095T	p.R1699W	.	.	.
MYH7	4625	broad.mit.edu	36	14	22955955	22955955	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000257	exon33	c.G4606A	p.E1536K	.	.	.
LRRC16B	90668	broad.mit.edu	36	14	23598379	23598379	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138360	exon21	c.A1687G	p.N563D	.	.	.
AKAP6	9472	broad.mit.edu	36	14	32217343	32217343	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004274	exon8	c.C2806T	p.Q936X	.	.	.
SRP54	6729	broad.mit.edu	36	14	34561940	34561940	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003136	exon14	c.G1230A	p.S410S	.	.	.
TRIM9	114088	broad.mit.edu	36	14	50630756	50630756	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052978	exon1	c.A652C	p.S218R	.	.	.
SAMD4A	23034	broad.mit.edu	36	14	54321078	54321078	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015589	exon11	c.C2115T	p.H705H	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63674287	63674287	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015180	exon79	c.C14676T	p.H4892H	.	.	.
PLEKHG3	26030	broad.mit.edu	36	14	64277946	64277946	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015549	exon14	c.G1790A	p.R597Q	.	.	.
SPTB	6710	broad.mit.edu	36	14	64285884	64285884	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001024858	exon35	c.C6880T	p.R2294C	.	.	.
ACTN1	87	broad.mit.edu	36	14	68426624	68426624	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130005	exon11	c.G1219A	p.E407K	.	.	.
SLC8A3	6547	broad.mit.edu	36	14	69703497	69703497	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033262	exon2	c.G1396A	p.V466M	.	.	.
NUMB	8650	broad.mit.edu	36	14	72823749	72823749	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005744	exon9	c.C477T	p.G159G	.	.	.
PGF	5228	broad.mit.edu	36	14	74485970	74485970	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002632	exon3	c.G158A	p.R53Q	.	.	.
ZC3H14	79882	broad.mit.edu	36	14	88110899	88110899	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001160104	exon7	c.G971A	p.R324Q	.	.	.
ASB2	51676	broad.mit.edu	36	14	93490576	93490576	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016150	exon2	c.G174A	p.A58A	.	.	.
PPP4R4	57718	broad.mit.edu	36	14	93782575	93782575	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_058237	exon14	c.C1557T	p.S519S	.	.	.
SERPINA12	145264	broad.mit.edu	36	14	94034008	94034008	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173850	exon3	c.C480T	p.A160A	.	.	.
KIF26A	26153	broad.mit.edu	36	14	103703079	103703079	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015656	exon5	c.1054delC	p.P352fs	.	.	.
INF2	64423	broad.mit.edu	36	14	104240790	104240790	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032714	exon4	c.621delC	p.G207fs	.	.	.
BRF1	2972	broad.mit.edu	36	14	104764055	104764055	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145685	exon4	c.264delC	p.P88fs	.	.	.
SIP1	8487	broad.mit.edu	36	14	38653393	38653393	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001009183	exon1	c.133delC	p.P45fs	.	.	.
ARID4A	5926	broad.mit.edu	36	14	57902651	57902651	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002892	exon22	c.3473delA	p.E1158fs	.	.	.
IL17RA	23765	broad.mit.edu	36	22	15970338	15970338	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014339	exon13	c.C2229T	p.D743D	.	.	.
MICAL3	57553	broad.mit.edu	36	22	16743979	16743979	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001136004	exon17	c.G2332A	p.G778S	.	.	.
ZNF74	7625	broad.mit.edu	36	22	19089894	19089894	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003426	exon5	c.G571A	p.V191I	.	.	.
BCR	613	broad.mit.edu	36	22	21956224	21956224	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021574	exon9	c.C2176T	p.R726C	.	.	.
CABIN1	23523	broad.mit.edu	36	22	22891508	22891508	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199281	exon31	c.C4921T	p.R1641X	.	.	.
TRIOBP	11078	broad.mit.edu	36	22	36439211	36439211	+	Silent	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039141	exon5	c.C303A	p.A101A	.	.	.
MICALL1	85377	broad.mit.edu	36	22	36638340	36638340	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033386	exon3	c.G232A	p.A78T	.	.	.
SOX10	6663	broad.mit.edu	36	22	36703988	36703988	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006941	exon3	c.C529T	p.R177W	.	.	.
CBX7	23492	broad.mit.edu	36	22	37860389	37860389	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175709	exon5	c.C561T	p.G187G	.	.	.
TNRC6B	23112	broad.mit.edu	36	22	38999412	38999412	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015088	exon6	c.C2844T	p.D948D	.	.	.
PMM1	5372	broad.mit.edu	36	22	40309989	40309989	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002676	exon5	c.C394T	p.R132W	.	.	.
TBC1D22A	25771	broad.mit.edu	36	22	45568250	45568250	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014346	exon3	c.G308A	p.R103H	.	.	.
ZBED4	9889	broad.mit.edu	36	22	48664441	48664441	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014838	exon2	c.C1127T	p.P376L	.	.	.
ZBED4	9889	broad.mit.edu	36	22	48666649	48666649	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014838	exon2	c.C3335T	p.P1112L	.	.	.
SUN2	25777	broad.mit.edu	36	22	37476959	37476961	+	In_Frame_Del	DEL	CTC	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015374	exon4	c.312_314del	p.104_105del	.	.	.
PRR5-ARHGAP8	553158	broad.mit.edu	36	22	43619843	43619843	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181334	exon11	c.993delC	p.I331fs	.	.	.
RIBC2	26150	broad.mit.edu	36	22	44192479	44192479	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015653	exon3	c.529delA	p.K177fs	.	.	.
DNMT1	1786	broad.mit.edu	36	19	10109650	10109650	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130823	exon36	c.G4151A	p.R1384Q	.	.	.
DNMT1	1786	broad.mit.edu	36	19	10152064	10152064	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130823	exon4	c.G407A	p.R136H	.	.	.
ICAM5	7087	broad.mit.edu	36	19	10265764	10265764	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003259	exon8	c.T1760C	p.V587A	.	.	.
SMARCA4	6597	broad.mit.edu	36	19	10975031	10975031	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003072	exon13	c.G1959A	p.P653P	.	.	.
DOCK6	57572	broad.mit.edu	36	19	11187115	11187115	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020812	exon32	c.C4054T	p.R1352C	.	.	.
C19orf39	126074	broad.mit.edu	36	19	11347276	11347276	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175871	exon2	c.C274A	p.L92I	.	.	.
CIRBP	1153	broad.mit.edu	36	19	1221937	1221937	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001280	exon2	c.C5T	p.A2V	.	.	.
ZNF44	51710	broad.mit.edu	36	19	12245634	12245634	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016264	exon4	c.T436C	p.C146R	.	.	.
ZNF564	163050	broad.mit.edu	36	19	12498528	12498528	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144976	exon4	c.G1394A	p.R465Q	.	.	.
RNASEH2A	10535	broad.mit.edu	36	19	12779306	12779306	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006397	exon4	c.G397A	p.V133M	.	.	.
MAST1	22983	broad.mit.edu	36	19	12839684	12839684	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014975	exon20	c.G2459A	p.R820H	.	.	.
MAST1	22983	broad.mit.edu	36	19	12841054	12841054	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014975	exon22	c.C2948T	p.A983V	.	.	.
IL27RA	9466	broad.mit.edu	36	19	14020807	14020807	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004843	exon9	c.G1156A	p.G386R	.	.	.
CD97	976	broad.mit.edu	36	19	14376305	14376305	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001025160	exon12	c.C1413T	p.N471N	.	.	.
OR7A17	26333	broad.mit.edu	36	19	14852800	14852800	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030901	exon1	c.T368C	p.F123S	.	.	.
NOTCH3	4854	broad.mit.edu	36	19	15150906	15150906	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000435	exon22	c.G3648A	p.A1216A	.	.	.
EPHX3	79852	broad.mit.edu	36	19	15199334	15199334	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024794	exon7	c.C997T	p.P333S	.	.	.
CYP4F3	4051	broad.mit.edu	36	19	15613323	15613323	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199209	exon2	c.G98A	p.R33H	.	.	.
TPM4	7171	broad.mit.edu	36	19	16053749	16053749	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145160	exon3	c.C267T	p.N89N	.	.	.
HSH2D	84941	broad.mit.edu	36	19	16129434	16129434	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032855	exon8	c.G889A	p.G297S	.	.	.
C19orf44	84167	broad.mit.edu	36	19	16473246	16473246	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032207	exon2	c.G643A	p.E215K	.	.	.
ZNF493	284443	broad.mit.edu	36	19	21399357	21399357	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175910	exon2	c.A1672G	p.K558E	.	.	.
ZNF675	171392	broad.mit.edu	36	19	23637800	23637800	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138330	exon2	c.G4T	p.G2X	.	.	.
LMNB2	84823	broad.mit.edu	36	19	2382784	2382784	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032737	exon10	c.C1647T	p.G549G	.	.	.
ZNF536	9745	broad.mit.edu	36	19	35626454	35626454	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014717	exon2	c.G145A	p.E49K	.	.	.
ZNF536	9745	broad.mit.edu	36	19	35627264	35627264	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014717	exon2	c.G955A	p.V319M	.	.	.
SLC7A9	11136	broad.mit.edu	36	19	38042610	38042610	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126335	exon8	c.C850T	p.L284L	.	.	.
ATCAY	85300	broad.mit.edu	36	19	3864846	3864846	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033064	exon9	c.C957T	p.C319C	.	.	.
SHC2	25759	broad.mit.edu	36	19	387639	387639	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012435	exon5	c.C765T	p.G255G	.	.	.
DAPK3	1613	broad.mit.edu	36	19	3912142	3912142	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001348	exon6	c.C647T	p.P216L	DAPK3,lung,NS,Substitution - Missense,-1	.	.
ZBTB7A	51341	broad.mit.edu	36	19	4005676	4005676	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015898	exon2	c.G555A	p.W185X	.	.	.
MAP2K2	5605	broad.mit.edu	36	19	4061646	4061646	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030662	exon3	c.A311G	p.H104R	.	.	.
ATP4A	495	broad.mit.edu	36	19	40742759	40742759	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000704	exon7	c.G844A	p.A282T	.	.	.
MLL4	9757	broad.mit.edu	36	19	40907809	40907809	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014727	exon10	c.G3509A	p.R1170H	.	.	.
ZNF461	92283	broad.mit.edu	36	19	41839226	41839226	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153257	exon4	c.A196G	p.M66V	.	.	.
SIPA1L3	23094	broad.mit.edu	36	19	43264335	43264335	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015073	exon3	c.G290A	p.S97N	.	.	.
YIF1B	90522	broad.mit.edu	36	19	43489957	43489957	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145462	exon7	c.G647A	p.G216D	.	.	.
FAM98C	147965	broad.mit.edu	36	19	43587901	43587901	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_174905	exon5	c.G633T	p.W211C	.	.	.
RYR1	6261	broad.mit.edu	36	19	43626729	43626729	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042723	exon6	c.C525T	p.S175S	.	.	.
SIRT2	22933	broad.mit.edu	36	19	44066170	44066170	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030593	exon8	c.T457G	p.F153V	.	.	.
PAF1	54623	broad.mit.edu	36	19	44569237	44569237	+	Silent	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019088	exon12	c.A1029G	p.S343S	.	.	.
FCGBP	8857	broad.mit.edu	36	19	45081602	45081602	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003890	exon18	c.G8420A	p.R2807Q	.	.	.
PRX	57716	broad.mit.edu	36	19	45592247	45592247	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181882	exon7	c.C3852T	p.S1284S	.	.	.
SNRPA	6626	broad.mit.edu	36	19	45955196	45955196	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004596	exon2	c.G193A	p.A65T	.	.	.
PAFAH1B3	5050	broad.mit.edu	36	19	47495990	47495990	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002573	exon4	c.G380A	p.R127Q	.	.	.
MEGF8	1954	broad.mit.edu	36	19	47539623	47539623	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001410	exon9	c.C1668T	p.D556D	.	.	.
ZNF233	353355	broad.mit.edu	36	19	49470300	49470300	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181756	exon5	c.G1647A	p.S549S	.	.	.
ZFP112	7771	broad.mit.edu	36	19	49524046	49524046	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013380	exon4	c.C2104A	p.L702I	.	.	.
ZNF285	26974	broad.mit.edu	36	19	49583827	49583827	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152354	exon4	c.C420T	p.S140S	.	.	.
PVRL2	5819	broad.mit.edu	36	19	50067162	50067162	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002856	exon3	c.G691A	p.A231T	.	.	.
RTN2	6253	broad.mit.edu	36	19	50690005	50690005	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206900	exon3	c.C178T	p.R60W	.	.	.
EML2	24139	broad.mit.edu	36	19	50808714	50808714	+	Silent	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193269	exon21	c.T2190C	p.H730H	.	.	.
NOVA2	4858	broad.mit.edu	36	19	51135051	51135051	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002516	exon4	c.C1389T	p.P463P	.	.	.
MEIS3	56917	broad.mit.edu	36	19	52602003	52602003	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020160	exon11	c.C1170T	p.I390I	.	.	.
PLA2G4C	8605	broad.mit.edu	36	19	53300489	53300489	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001159323	exon3	c.G33A	p.G11G	.	.	.
IZUMO1	284359	broad.mit.edu	36	19	53939575	53939575	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182575	exon4	c.T344C	p.L115S	.	.	.
PPP1R15A	23645	broad.mit.edu	36	19	54069043	54069043	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014330	exon2	c.C741T	p.S247S	.	.	.
TULP2	7288	broad.mit.edu	36	19	54083224	54083224	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003323	exon8	c.C743T	p.T248M	.	.	.
IRF3	3661	broad.mit.edu	36	19	54858507	54858507	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001197123	exon3	c.G137A	p.R46H	.	.	.
PNKP	11284	broad.mit.edu	36	19	55057647	55057647	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007254	exon10	c.C896T	p.P299L	.	.	.
SPIB	6689	broad.mit.edu	36	19	55618688	55618688	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003121	exon5	c.G354A	p.P118P	.	.	.
SYT3	84258	broad.mit.edu	36	19	55820360	55820360	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032298	exon7	c.C1578T	p.I526I	.	.	.
SHANK1	50944	broad.mit.edu	36	19	55867117	55867117	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016148	exon21	c.C2644T	p.P882S	.	.	.
SIGLEC10	89790	broad.mit.edu	36	19	56611740	56611740	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171157	exon3	c.G698A	p.R233H	.	.	.
ZNF528	84436	broad.mit.edu	36	19	57610857	57610857	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032423	exon7	c.C940T	p.R314X	.	.	.
ZNF468	90333	broad.mit.edu	36	19	58036574	58036574	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199132	exon5	c.G626A	p.R209H	.	.	.
ZNF321	399669	broad.mit.edu	36	19	58124437	58124437	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203307	exon2	c.C26T	p.A9V	.	.	.
ZNF665	79788	broad.mit.edu	36	19	58360567	58360567	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024733	exon4	c.C988T	p.R330C	.	.	.
NLRP12	91662	broad.mit.edu	36	19	59005723	59005723	+	Silent	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144687	exon3	c.T1002C	p.P334P	.	.	.
PRKCG	5582	broad.mit.edu	36	19	59093117	59093117	+	Silent	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002739	exon10	c.A1032G	p.G344G	.	.	.
TTYH1	57348	broad.mit.edu	36	19	59622275	59622275	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005367	exon2	c.C288T	p.V96V	.	.	.
CCDC106	29903	broad.mit.edu	36	19	60852391	60852391	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013301	exon3	c.G40A	p.D14N	.	.	.
NLRP4	147945	broad.mit.edu	36	19	61061735	61061735	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_134444	exon3	c.G1164A	p.P388P	.	.	.
GTF2F1	2962	broad.mit.edu	36	19	6331372	6331372	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002096	exon13	c.G1474A	p.V492M	.	.	.
ZNF8	7554	broad.mit.edu	36	19	63497805	63497805	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021089	exon4	c.C819T	p.T273T	.	.	.
TRIM28	10155	broad.mit.edu	36	19	63753137	63753137	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005762	exon15	c.C2116T	p.R706C	.	.	.
DENND1C	79958	broad.mit.edu	36	19	6418848	6418848	+	Silent	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024898	exon23	c.A2073G	p.E691E	.	.	.
TUBB4	10382	broad.mit.edu	36	19	6446458	6446458	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006087	exon4	c.C1052T	p.T351M	.	.	.
MCOLN1	57192	broad.mit.edu	36	19	7497677	7497677	+	Silent	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020533	exon4	c.C436A	p.R146R	.	.	.
KIAA1543	57662	broad.mit.edu	36	19	7576119	7576119	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080429	exon2	c.G156A	p.V52V	.	.	.
CD209	30835	broad.mit.edu	36	19	7715880	7715880	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144894	exon3	c.G715A	p.A239T	.	.	.
FBN3	84467	broad.mit.edu	36	19	8087654	8087654	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032447	exon28	c.G3616A	p.V1206I	.	.	.
ZNF558	148156	broad.mit.edu	36	19	8792929	8792929	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144693	exon3	c.G174A	p.A58A	.	.	.
ZNF317	57693	broad.mit.edu	36	19	9127712	9127712	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001190791	exon2	c.C20T	p.T7I	.	.	.
OLFM2	93145	broad.mit.edu	36	19	9832411	9832411	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_058164	exon2	c.C123T	p.D41D	.	.	.
CNN2	1265	broad.mit.edu	36	19	987152	987152	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004368	exon5	c.C414T	p.S138S	.	.	.
ICAM4	3386	broad.mit.edu	36	19	10258719	10258719	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001544	exon1	c.31delT	p.F11fs	.	.	.
JAK3	3718	broad.mit.edu	36	19	17816112	17816112	+	Frame_Shift_Del	DEL	G	-	-	rs67296869	unknown	TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000215	exon2	c.115delC	p.Q39fs	.	.	.
GZMM	3004	broad.mit.edu	36	19	495110	495110	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005317	exon1	c.39delG	p.L13fs	.	.	.
APOC1	341	broad.mit.edu	36	19	50111353	50111354	+	Frame_Shift_Del	DEL	AC	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001645	exon3	c.125_126del	p.42_42del	.	.	.
CLPTM1	1209	broad.mit.edu	36	19	50181655	50181655	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001294	exon7	c.775delC	p.P259fs	.	.	.
MYH14	79784	broad.mit.edu	36	19	55450384	55450384	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145809	exon17	c.2041delG	p.G681fs	.	.	.
INSR	3643	broad.mit.edu	36	19	7068191	7068191	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000208	exon22	c.4025delG	p.G1342fs	.	.	.
MUC16	94025	broad.mit.edu	36	19	8917821	8917821	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024690	exon3	c.30625delA	p.T10209fs	.	.	.
VPS13B	157680	broad.mit.edu	36	8	100899858	100899858	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152564	exon46	c.C8365T	p.P2789S	.	.	.
UBR5	51366	broad.mit.edu	36	8	103360541	103360541	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015902	exon43	c.C6073T	p.R2025C	.	.	.
RP1L1	94137	broad.mit.edu	36	8	10507824	10507824	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178857	exon4	c.C1194T	p.G398G	.	.	.
PINX1	54984	broad.mit.edu	36	8	10660834	10660834	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017884	exon7	c.C474T	p.G158G	.	.	.
XKR6	286046	broad.mit.edu	36	8	10819618	10819618	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173683	exon2	c.C897T	p.S299S	.	.	.
TMEM74	157753	broad.mit.edu	36	8	109865963	109865963	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153015	exon2	c.G541A	p.A181T	.	.	.
CSMD3	114788	broad.mit.edu	36	8	114360102	114360102	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198123	exon3	c.G409T	p.G137X	.	.	.
TRPS1	7227	broad.mit.edu	36	8	116496221	116496221	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014112	exon7	c.C3091T	p.Q1031X	.	.	.
TNFRSF11B	4982	broad.mit.edu	36	8	120014565	120014565	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002546	exon2	c.C186T	p.C62C	.	.	.
DLC1	10395	broad.mit.edu	36	8	12988276	12988276	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182643	exon17	c.G4360A	p.A1454T	.	.	.
DLC1	10395	broad.mit.edu	36	8	13401631	13401631	+	Silent	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182643	exon2	c.A321G	p.L107L	.	.	.
TG	7038	broad.mit.edu	36	8	134064777	134064777	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003235	exon35	c.T6200A	p.I2067N	.	.	.
ST3GAL1	6482	broad.mit.edu	36	8	134541345	134541345	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173344	exon10	c.C867T	p.F289F	.	.	.
FAM135B	51059	broad.mit.edu	36	8	139449376	139449376	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015912	exon2	c.G33A	p.S11S	.	.	.
DENND3	22898	broad.mit.edu	36	8	142230928	142230928	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014957	exon7	c.G644A	p.R215Q	.	.	.
CYP11B1	1584	broad.mit.edu	36	8	143952814	143952814	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001026213	exon8	c.C1291A	p.L431I	.	.	.
SCRIB	23513	broad.mit.edu	36	8	144958009	144958009	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015356	exon23	c.G3210A	p.T1070T	.	.	.
CPSF1	29894	broad.mit.edu	36	8	145591318	145591318	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013291	exon28	c.G3157A	p.E1053K	.	.	.
MTUS1	57509	broad.mit.edu	36	8	17623558	17623558	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001931	exon1	c.G133A	p.V45M	.	.	.
MYOM2	9172	broad.mit.edu	36	8	2004978	2004978	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003970	exon8	c.C748T	p.R250W	.	.	.
PHYHIP	9796	broad.mit.edu	36	8	22135085	22135085	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014759	exon5	c.C719T	p.A240V	.	.	.
PIWIL2	55124	broad.mit.edu	36	8	22221509	22221509	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018068	exon14	c.G1664A	p.R555H	.	.	.
LOXL2	4017	broad.mit.edu	36	8	23247068	23247068	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002318	exon5	c.C757T	p.R253W	.	.	.
CDCA2	157313	broad.mit.edu	36	8	25420560	25420560	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152562	exon15	c.G2461A	p.V821I	.	.	.
CHRNA2	1135	broad.mit.edu	36	8	27380764	27380764	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000742	exon5	c.C348T	p.S116S	.	.	.
EXTL3	2137	broad.mit.edu	36	8	28629730	28629730	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001440	exon3	c.G235A	p.V79M	.	.	.
EXTL3	2137	broad.mit.edu	36	8	28630536	28630536	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001440	exon3	c.C1041T	p.G347G	.	.	.
TEX15	56154	broad.mit.edu	36	8	30820000	30820000	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031271	exon1	c.C6076T	p.Q2026X	.	.	.
FGFR1	2260	broad.mit.edu	36	8	38406412	38406412	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001174065	exon3	c.C303T	p.C101C	.	.	.
FGFR1	2260	broad.mit.edu	36	8	38406538	38406538	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001174065	exon3	c.C177T	p.D59D	.	.	.
MYST3	7994	broad.mit.edu	36	8	41953976	41953976	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099413	exon8	c.G1070A	p.R357Q	.	.	.
IKBKB	3551	broad.mit.edu	36	8	42285642	42285642	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001190722	exon8	c.G634A	p.A212T	.	.	.
DKK4	27121	broad.mit.edu	36	8	42350842	42350842	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014420	exon4	c.G608A	p.R203Q	.	.	.
SLC20A2	6575	broad.mit.edu	36	8	42413677	42413677	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006749	exon8	c.G1510A	p.G504S	.	.	.
PRKDC	5591	broad.mit.edu	36	8	48876089	48876089	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001081640	exon71	c.G9933A	p.T3311T	.	.	.
PRKDC	5591	broad.mit.edu	36	8	48963722	48963722	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001081640	exon34	c.G4322A	p.R1441H	.	.	.
ST18	9705	broad.mit.edu	36	8	53191515	53191515	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014682	exon25	c.G2876A	p.S959N	.	.	.
NSMAF	8439	broad.mit.edu	36	8	59684726	59684726	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003580	exon10	c.C678T	p.N226N	.	.	.
CYP7B1	9420	broad.mit.edu	36	8	65690990	65690990	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004820	exon3	c.A662G	p.D221G	.	.	.
MYBL1	4603	broad.mit.edu	36	8	67670506	67670506	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080416	exon6	c.C553T	p.R185X	.	.	.
SULF1	23213	broad.mit.edu	36	8	70702621	70702621	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128205	exon17	c.A2008G	p.R670G	.	.	.
NCOA2	10499	broad.mit.edu	36	8	71237550	71237550	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006540	exon9	c.C926T	p.A309V	.	.	.
KCNB2	9312	broad.mit.edu	36	8	74010870	74010870	+	Silent	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004770	exon3	c.A726G	p.A242A	.	.	.
STAU2	27067	broad.mit.edu	36	8	74690554	74690554	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164383	exon3	c.G72A	p.K24K	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77924455	77924455	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024721	exon8	c.G3798A	p.T1266T	.	.	.
HEY1	23462	broad.mit.edu	36	8	80840548	80840548	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012258	exon5	c.G345A	p.A115A	.	.	.
TSPYL5	85453	broad.mit.edu	36	8	98358549	98358549	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033512	exon1	c.C700T	p.R234X	.	.	.
MATN2	4147	broad.mit.edu	36	8	99012596	99012596	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030583	exon3	c.C382T	p.R128W	.	.	.
MATN2	4147	broad.mit.edu	36	8	99088947	99088947	+	Silent	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030583	exon10	c.C1515A	p.S505S	.	.	.
MATN2	4147	broad.mit.edu	36	8	99099511	99099511	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030583	exon12	c.C1810T	p.R604C	.	.	.
ADAM18	8749	broad.mit.edu	36	8	39613977	39613977	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014237	exon8	c.626delA	p.Q209fs	.	.	.
SLC25A24	29957	broad.mit.edu	36	1	108505347	108505347	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013386	exon4	c.C490A	p.R164S	.	.	.
AHCYL1	10768	broad.mit.edu	36	1	110357081	110357081	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006621	exon5	c.C517T	p.R173C	.	.	.
SLC16A1	6566	broad.mit.edu	36	1	113262027	113262027	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166496	exon4	c.G524A	p.R175K	.	.	.
VTCN1	79679	broad.mit.edu	36	1	117500867	117500867	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024626	exon3	c.C297T	p.G99G	.	.	.
ADAM30	11085	broad.mit.edu	36	1	120239880	120239880	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021794	exon1	c.C603T	p.H201H	.	.	.
NOTCH2	4853	broad.mit.edu	36	1	120269741	120269741	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024408	exon25	c.G4221A	p.S1407S	.	.	.
VPS13D	55187	broad.mit.edu	36	1	12243391	12243391	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018156	exon11	c.C1165T	p.R389C	.	.	.
AADACL4	343066	broad.mit.edu	36	1	12648750	12648750	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013630	exon4	c.G641A	p.R214Q	.	.	.
ATAD3B	83858	broad.mit.edu	36	1	1411029	1411029	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031921	exon9	c.G911A	p.S304N	.	.	.
POLR3C	10623	broad.mit.edu	36	1	144319962	144319962	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006468	exon3	c.C202T	p.H68Y	.	.	.
FMO5	2330	broad.mit.edu	36	1	145154009	145154009	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144830	exon2	c.T263G	p.V88G	.	.	.
GJA8	2703	broad.mit.edu	36	1	145846863	145846863	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005267	exon2	c.G157A	p.V53M	.	.	.
PLEKHO1	51177	broad.mit.edu	36	1	148397947	148397947	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016274	exon6	c.C835T	p.R279W	.	.	.
RPRD2	23248	broad.mit.edu	36	1	148699392	148699392	+	Silent	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015203	exon9	c.T1386C	p.S462S	.	.	.
CGN	57530	broad.mit.edu	36	1	149758487	149758487	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020770	exon2	c.C868A	p.L290M	.	.	.
TCHH	7062	broad.mit.edu	36	1	150349389	150349389	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007113	exon2	c.G2928T	p.E976D	.	.	.
KPRP	448834	broad.mit.edu	36	1	150999746	150999746	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001025231	exon2	c.G1058A	p.R353H	.	.	.
HCN3	57657	broad.mit.edu	36	1	153524745	153524745	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020897	exon8	c.G2192A	p.R731H	.	.	.
ASH1L	55870	broad.mit.edu	36	1	153757774	153757774	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018489	exon2	c.G161A	p.R54Q	.	.	.
TMEM79	84283	broad.mit.edu	36	1	154522251	154522251	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032323	exon2	c.G610A	p.V204M	.	.	.
PEAR1	375033	broad.mit.edu	36	1	155141792	155141792	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080471	exon4	c.C259T	p.R87C	.	.	.
ARHGEF11	9826	broad.mit.edu	36	1	155184791	155184791	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198236	exon23	c.G2049A	p.A683A	.	.	.
CDK11B	984	broad.mit.edu	36	1	1562688	1562688	+	Silent	SNP	A	G	G	rs61745144	unknown	TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033486	exon14	c.T1509C	p.Y503Y	.	.	.
MNDA	4332	broad.mit.edu	36	1	157078609	157078609	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002432	exon2	c.T42G	p.F14L	.	.	.
AGMAT	79814	broad.mit.edu	36	1	15773887	15773887	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024758	exon6	c.G937A	p.V313M	.	.	.
IGSF8	93185	broad.mit.edu	36	1	158329368	158329368	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052868	exon4	c.C1282T	p.R428W	.	.	.
ADAMTS4	9507	broad.mit.edu	36	1	159434952	159434952	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005099	exon1	c.G90A	p.P30P	.	.	.
UQCRHL	440567	broad.mit.edu	36	1	16006717	16006717	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001089591	exon1	c.C15T	p.D5D	.	.	.
SPEN	23013	broad.mit.edu	36	1	16133395	16133395	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015001	exon11	c.C8073T	p.N2691N	.	.	.
ZBTB17	7709	broad.mit.edu	36	1	16146124	16146124	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003443	exon4	c.C287T	p.A96V	.	.	.
RCSD1	92241	broad.mit.edu	36	1	165919771	165919771	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052862	exon2	c.C17T	p.A6V	.	.	.
NADK	65220	broad.mit.edu	36	1	1675463	1675463	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198995	exon8	c.G892A	p.A298T	.	.	.
BAT2L2	23215	broad.mit.edu	36	1	169768245	169768245	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015172	exon12	c.G1388A	p.R463H	.	.	.
RABGAP1L	9910	broad.mit.edu	36	1	172606788	172606788	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014857	exon12	c.G1514A	p.C505Y	.	.	.
PADI6	353238	broad.mit.edu	36	1	17587501	17587501	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207421	exon7	c.G718A	p.D240N	.	.	.
PADI6	353238	broad.mit.edu	36	1	17593139	17593139	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207421	exon10	c.G1157A	p.R386Q	.	.	.
RCC2	55920	broad.mit.edu	36	1	17621812	17621812	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001136204	exon4	c.C631T	p.R211W	.	.	.
TDRD5	163589	broad.mit.edu	36	1	177926640	177926640	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199085	exon18	c.G3047A	p.R1016Q	.	.	.
NPL	80896	broad.mit.edu	36	1	181050591	181050591	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030769	exon6	c.G339A	p.P113P	.	.	.
DHX9	1660	broad.mit.edu	36	1	181119051	181119051	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001357	exon25	c.C3069T	p.H1023H	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184310530	184310530	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031935	exon53	c.C8174T	p.A2725V	.	.	.
ASPM	259266	broad.mit.edu	36	1	195357675	195357675	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018136	exon16	c.G3863A	p.R1288H	.	.	.
PTPRC	5788	broad.mit.edu	36	1	196932487	196932487	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002838	exon4	c.A118G	p.S40G	.	.	.
PTPRC	5788	broad.mit.edu	36	1	196952547	196952547	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080921	exon10	c.C916T	p.R306C	.	.	.
MYBPH	4608	broad.mit.edu	36	1	201410258	201410258	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004997	exon3	c.G431A	p.R144H	.	.	.
TMCC2	9911	broad.mit.edu	36	1	203477450	203477450	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014858	exon2	c.C402T	p.Y134Y	.	.	.
PIGR	5284	broad.mit.edu	36	1	205173102	205173102	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002644	exon7	c.G1738A	p.A580T	.	.	.
DDOST	1650	broad.mit.edu	36	1	20853778	20853778	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005216	exon6	c.C612T	p.A204A	.	.	.
ANGEL2	90806	broad.mit.edu	36	1	211253079	211253079	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144567	exon2	c.T364C	p.S122P	.	.	.
EIF4G3	8672	broad.mit.edu	36	1	21141357	21141357	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003760	exon9	c.C709T	p.L237L	.	.	.
EIF4G3	8672	broad.mit.edu	36	1	21172122	21172122	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003760	exon6	c.C383T	p.T128M	.	.	.
TGFB2	7042	broad.mit.edu	36	1	216603367	216603367	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135599	exon2	c.C415T	p.L139F	.	.	.
RAB3GAP2	25782	broad.mit.edu	36	1	218431241	218431241	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012414	exon14	c.G1279A	p.D427N	.	.	.
MARK1	4139	broad.mit.edu	36	1	218892021	218892021	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018650	exon15	c.C1642T	p.R548X	.	.	.
HSPG2	3339	broad.mit.edu	36	1	22079514	22079514	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005529	exon16	c.C2124T	p.S708S	.	.	.
GALNT2	2590	broad.mit.edu	36	1	228481752	228481752	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004481	exon16	c.C1641T	p.S547S	.	.	.
PGBD5	79605	broad.mit.edu	36	1	228539556	228539556	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024554	exon4	c.C789T	p.N263N	.	.	.
KIAA1804	84451	broad.mit.edu	36	1	231556243	231556243	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032435	exon3	c.G1054A	p.V352M	.	.	.
KIAA1804	84451	broad.mit.edu	36	1	231564530	231564530	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032435	exon5	c.G1420A	p.V474M	.	.	.
TARBP1	6894	broad.mit.edu	36	1	232632032	232632032	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005646	exon16	c.C2624T	p.S875L	.	.	.
RBM34	23029	broad.mit.edu	36	1	233361680	233361680	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015014	exon11	c.C1264T	p.R422C	.	.	.
CEP170	9859	broad.mit.edu	36	1	241428997	241428997	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042405	exon7	c.G619C	p.A207P	.	.	.
KIF26B	55083	broad.mit.edu	36	1	243597247	243597247	+	Silent	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018012	exon3	c.C954A	p.T318T	.	.	.
KIF26B	55083	broad.mit.edu	36	1	243914171	243914171	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018012	exon11	c.G2272A	p.A758T	.	.	.
OR2L13	284521	broad.mit.edu	36	1	246329670	246329670	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175911	exon3	c.G370A	p.A124T	.	.	.
OR2T27	403239	broad.mit.edu	36	1	246880778	246880778	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001824	exon1	c.G31A	p.D11N	.	.	.
UBXN11	91544	broad.mit.edu	36	1	26484959	26484959	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001077262	exon5	c.G356A	p.R119Q	.	.	.
SESN2	83667	broad.mit.edu	36	1	28478238	28478238	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031459	exon9	c.C1255T	p.R419W	.	.	.
PTPRU	10076	broad.mit.edu	36	1	29481803	29481803	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005704	exon12	c.C1897T	p.R633W	.	.	.
MATN1	4146	broad.mit.edu	36	1	30961522	30961522	+	Missense_Mutation	SNP	C	T	T	rs34069015	unknown	TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002379	exon5	c.G1028A	p.R343Q	.	.	.
PUM1	9698	broad.mit.edu	36	1	31199200	31199200	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001020658	exon15	c.C2539T	p.R847W	.	.	.
KHDRBS1	10657	broad.mit.edu	36	1	32280722	32280722	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006559	exon9	c.C1242T	p.D414D	.	.	.
MEGF6	1953	broad.mit.edu	36	1	3508950	3508950	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001409	exon2	c.C206T	p.T69M	.	.	.
GRIK3	2899	broad.mit.edu	36	1	37118832	37118832	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000831	exon3	c.C540T	p.D180D	.	.	.
KIAA0562	9731	broad.mit.edu	36	1	3743055	3743055	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014704	exon10	c.C1181T	p.A394V	.	.	.
MACF1	23499	broad.mit.edu	36	1	39625585	39625585	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012090	exon54	c.G8298A	p.R2766R	.	.	.
MACF1	23499	broad.mit.edu	36	1	39723921	39723921	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012090	exon95	c.C16161T	p.S5387S	.	.	.
CTPS	1503	broad.mit.edu	36	1	41247805	41247805	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001905	exon17	c.C1648T	p.R550W	.	.	.
KIAA0467	23334	broad.mit.edu	36	1	43665878	43665878	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015284	exon11	c.C992T	p.A331V	.	.	.
KIAA0467	23334	broad.mit.edu	36	1	43681864	43681864	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015284	exon47	c.C5938T	p.R1980C	.	.	.
PTCH2	8643	broad.mit.edu	36	1	45066800	45066800	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166292	exon12	c.G1555A	p.V519I	.	.	.
MUTYH	4595	broad.mit.edu	36	1	45571053	45571053	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001048173	exon7	c.G461A	p.R154H	.	.	.
LRRC41	10489	broad.mit.edu	36	1	46517757	46517757	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006369	exon8	c.C2137T	p.R713C	.	.	.
SLC5A9	200010	broad.mit.edu	36	1	48467192	48467192	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135181	exon3	c.C318T	p.A106A	.	.	.
CC2D1B	200014	broad.mit.edu	36	1	52598692	52598692	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032449	exon6	c.G595A	p.G199S	.	.	.
PRPF38A	84950	broad.mit.edu	36	1	52650880	52650880	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032864	exon5	c.A605G	p.E202G	.	.	.
MRPL37	51253	broad.mit.edu	36	1	54454451	54454451	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016491	exon6	c.C1040T	p.T347M	.	.	.
C1orf168	199920	broad.mit.edu	36	1	57030450	57030450	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004303	exon2	c.C624T	p.N208N	.	.	.
CHD5	26038	broad.mit.edu	36	1	6106637	6106637	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015557	exon31	c.G4657A	p.A1553T	.	.	.
CHD5	26038	broad.mit.edu	36	1	6124896	6124896	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015557	exon15	c.C2315T	p.A772V	.	.	.
JAK1	3716	broad.mit.edu	36	1	65093829	65093829	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002227	exon11	c.G1599A	p.T533T	.	.	.
PHF13	148479	broad.mit.edu	36	1	6602512	6602512	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153812	exon3	c.C204T	p.D68D	.	.	.
DNAJC11	55735	broad.mit.edu	36	1	6622597	6622597	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018198	exon11	c.C1205T	p.A402V	.	.	.
SERBP1	26135	broad.mit.edu	36	1	67663436	67663436	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018067	exon3	c.C523T	p.R175C	.	.	.
LHX8	431707	broad.mit.edu	36	1	75399148	75399148	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001933	exon10	c.C1051A	p.L351M	.	.	.
LPAR3	23566	broad.mit.edu	36	1	85104279	85104279	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012152	exon2	c.C113T	p.T38M	.	.	.
SYDE2	84144	broad.mit.edu	36	1	85428907	85428907	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032184	exon2	c.C862T	p.R288C	.	.	.
HS2ST1	9653	broad.mit.edu	36	1	87311231	87311231	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134492	exon2	c.C151T	p.R51X	.	.	.
SLC2A7	155184	broad.mit.edu	36	1	8986128	8986128	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207420	exon12	c.G1357A	p.G453R	.	.	.
GLMN	11146	broad.mit.edu	36	1	92507921	92507921	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_053274	exon9	c.C924T	p.S308S	.	.	.
RPAP2	79871	broad.mit.edu	36	1	92574560	92574560	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024813	exon10	c.T1607A	p.V536D	.	.	.
BCAR3	8412	broad.mit.edu	36	1	93912902	93912902	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003567	exon2	c.C173A	p.P58H	.	.	.
ABCD3	5825	broad.mit.edu	36	1	94716441	94716441	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002858	exon8	c.G666A	p.T222T	.	.	.
PIK3CD	5293	broad.mit.edu	36	1	9693158	9693158	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005026	exon3	c.G58A	p.V20I	.	.	.
CLSTN1	22883	broad.mit.edu	36	1	9718154	9718154	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014944	exon12	c.C1811A	p.P604H	.	.	.
SYCP1	6847	broad.mit.edu	36	1	115338925	115338925	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003176	exon31	c.2787delA	p.P929fs	.	.	.
FAM189B	10712	broad.mit.edu	36	1	153488202	153488202	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198264	exon3	c.452delC	p.P151fs	.	.	.
ASH1L	55870	broad.mit.edu	36	1	153675188	153675190	+	In_Frame_Del	DEL	ATG	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018489	exon5	c.5380_5382del	p.1794_1794del	.	.	.
KIAA0907	22889	broad.mit.edu	36	1	154153046	154153047	+	Frame_Shift_Del	DEL	CT	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014949	exon12	c.1546_1547del	p.516_516del	.	.	.
UBR4	23352	broad.mit.edu	36	1	19409242	19409242	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020765	exon1	c.88delG	p.E30fs	.	.	.
PLEKHA6	22874	broad.mit.edu	36	1	202500758	202500758	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014935	exon6	c.316delC	p.L106fs	.	.	.
PLXNA2	5362	broad.mit.edu	36	1	206382410	206382410	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025179	exon4	c.1393delC	p.H465fs	.	.	.
TCEB3	6924	broad.mit.edu	36	1	23950609	23950611	+	In_Frame_Del	DEL	GAA	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003198	exon4	c.1005_1007del	p.335_336del	.	.	.
AHDC1	27245	broad.mit.edu	36	1	27749456	27749456	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001029882	exon6	c.1758delA	p.K586fs	.	.	.
SDC3	9672	broad.mit.edu	36	1	31122429	31122429	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014654	exon3	c.427delC	p.L143fs	.	.	.
CSF3R	1441	broad.mit.edu	36	1	36708008	36708008	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172313	exon11	c.1306delC	p.H436fs	.	.	.
DNAJC11	55735	broad.mit.edu	36	1	6628606	6628607	+	Frame_Shift_Del	DEL	CA	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018198	exon8	c.723_724del	p.241_242del	.	.	.
BIRC3	330	broad.mit.edu	36	11	101711925	101711925	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182962	exon8	c.G1343A	p.R448Q	.	.	.
BIRC3	330	broad.mit.edu	36	11	101712045	101712045	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182962	exon8	c.C1463T	p.T488M	.	.	.
MMP7	4316	broad.mit.edu	36	11	101903801	101903801	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002423	exon2	c.G232A	p.V78I	.	.	.
CUL5	8065	broad.mit.edu	36	11	107430851	107430851	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003478	exon7	c.C739T	p.R247C	.	.	.
KDELC2	143888	broad.mit.edu	36	11	107867050	107867050	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153705	exon2	c.G257A	p.R86Q	.	.	.
LAYN	143903	broad.mit.edu	36	11	110933493	110933493	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178834	exon6	c.G676A	p.A226T	.	.	.
USP28	57646	broad.mit.edu	36	11	113184291	113184291	+	Missense_Mutation	SNP	T	C	C	rs36042945	unknown	TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020886	exon18	c.A2243G	p.Q748R	.	.	.
SIDT2	51092	broad.mit.edu	36	11	116563574	116563574	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040455	exon12	c.G1108A	p.D370N	.	.	.
UBE4A	9354	broad.mit.edu	36	11	117757317	117757317	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004788	exon12	c.A1899T	p.E633D	.	.	.
MLL	4297	broad.mit.edu	36	11	117878900	117878900	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005933	exon27	c.G7074A	p.S2358S	.	.	.
BCL9L	283149	broad.mit.edu	36	11	118284521	118284521	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182557	exon2	c.G80A	p.R27H	.	.	.
PDZD3	79849	broad.mit.edu	36	11	118564457	118564457	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001168468	exon8	c.G1046A	p.R349H	.	.	.
THY1	7070	broad.mit.edu	36	11	118796266	118796266	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006288	exon3	c.G78A	p.T26T	.	.	.
PVRL1	5818	broad.mit.edu	36	11	119041178	119041178	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002855	exon6	c.G1043A	p.R348H	.	.	.
C11orf63	79864	broad.mit.edu	36	11	122300885	122300885	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024806	exon4	c.T935A	p.I312N	.	.	.
MUC5B	727897	broad.mit.edu	36	11	1230195	1230195	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002458	exon32	c.C14910T	p.Y4970Y	.	.	.
SIAE	54414	broad.mit.edu	36	11	124022496	124022496	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170601	exon7	c.G941A	p.R314H	.	.	.
SLC37A2	219855	broad.mit.edu	36	11	124457435	124457435	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145290	exon10	c.A971G	p.N324S	.	.	.
SRPR	6734	broad.mit.edu	36	11	125642415	125642415	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177842	exon3	c.C307T	p.R103C	.	.	.
ARHGAP32	9743	broad.mit.edu	36	11	128345679	128345679	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014715	exon13	c.C3550T	p.R1184C	.	.	.
PRDM10	56980	broad.mit.edu	36	11	129292238	129292238	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020228	exon16	c.C2331T	p.C777C	.	.	.
BTBD10	84280	broad.mit.edu	36	11	13423168	13423168	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032320	exon2	c.G80A	p.R27H	.	.	.
MRGPRX2	117194	broad.mit.edu	36	11	19033551	19033551	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_054030	exon2	c.G975A	p.S325S	.	.	.
OSBPL5	114879	broad.mit.edu	36	11	3080067	3080067	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145638	exon11	c.C1143T	p.N381N	.	.	.
PAX6	5080	broad.mit.edu	36	11	31779685	31779685	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127612	exon6	c.C357T	p.S119S	.	.	.
WT1	7490	broad.mit.edu	36	11	32406732	32406732	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198551	exon2	c.C20T	p.T7M	.	.	.
ZNF195	7748	broad.mit.edu	36	11	3337330	3337330	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007152	exon4	c.C1268T	p.T423M	.	.	.
LDLRAD3	143458	broad.mit.edu	36	11	36014285	36014285	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_174902	exon2	c.T103C	p.F35L	.	.	.
PRR5L	79899	broad.mit.edu	36	11	36440627	36440627	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024841	exon10	c.C872T	p.T291M	.	.	.
PGAP2	27315	broad.mit.edu	36	11	3801743	3801743	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014489	exon4	c.C403T	p.R135C	.	.	.
LRRC4C	57689	broad.mit.edu	36	11	40092666	40092666	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020929	exon2	c.C1753A	p.L585M	.	.	.
DGKZ	8525	broad.mit.edu	36	11	46349652	46349652	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003646	exon8	c.G682A	p.E228K	.	.	.
MYBPC3	4607	broad.mit.edu	36	11	47329537	47329537	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000256	exon2	c.C121T	p.R41C	.	.	.
OR51S1	119692	broad.mit.edu	36	11	4826704	4826704	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004758	exon1	c.C311T	p.A104V	.	.	.
OR51G2	81282	broad.mit.edu	36	11	4892959	4892959	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005238	exon1	c.T511G	p.F171V	.	.	.
UBQLN3	50613	broad.mit.edu	36	11	5487060	5487060	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017481	exon2	c.G305A	p.C102Y	.	.	.
OR5M10	390167	broad.mit.edu	36	11	56101236	56101236	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004741	exon1	c.G538A	p.A180T	.	.	.
OR6Q1	219952	broad.mit.edu	36	11	57555830	57555830	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005186	exon1	c.T830A	p.V277E	.	.	.
MS4A14	84689	broad.mit.edu	36	11	59939505	59939505	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032597	exon5	c.C488T	p.S163L	.	.	.
DDB1	1642	broad.mit.edu	36	11	60826738	60826738	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001923	exon24	c.G3004A	p.E1002K	.	.	.
DAK	26007	broad.mit.edu	36	11	60868271	60868271	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015533	exon13	c.G1190A	p.R397Q	.	.	.
CPSF7	79869	broad.mit.edu	36	11	60945479	60945479	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001136040	exon3	c.C232T	p.R78C	.	.	.
C11orf9	745	broad.mit.edu	36	11	61295650	61295650	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013279	exon6	c.C816T	p.T272T	.	.	.
FADS3	3995	broad.mit.edu	36	11	61400220	61400220	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021727	exon10	c.G1099A	p.V367M	.	.	.
INTS5	80789	broad.mit.edu	36	11	62171450	62171450	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030628	exon2	c.G2678A	p.R893H	.	.	.
SLC22A6	9356	broad.mit.edu	36	11	62505079	62505079	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004790	exon6	c.C991T	p.R331C	.	.	.
SLC22A10	387775	broad.mit.edu	36	11	62821732	62821732	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039752	exon4	c.G787A	p.V263M	.	.	.
FLRT1	23769	broad.mit.edu	36	11	63640432	63640432	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013280	exon2	c.C117T	p.Y39Y	.	.	.
ATG2A	23130	broad.mit.edu	36	11	64435189	64435189	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015104	exon10	c.T1363C	p.F455L	.	.	.
FAM89B	23625	broad.mit.edu	36	11	65097561	65097561	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098785	exon2	c.C443T	p.A148V	.	.	.
CNIH2	254263	broad.mit.edu	36	11	65806782	65806782	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182553	exon3	c.C153T	p.R51R	.	.	.
NPAS4	266743	broad.mit.edu	36	11	65945339	65945339	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178864	exon1	c.C113T	p.S38F	.	.	.
DCHS1	8642	broad.mit.edu	36	11	6601310	6601310	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003737	exon21	c.G8173A	p.V2725M	.	.	.
BBS1	582	broad.mit.edu	36	11	66054946	66054946	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024649	exon15	c.G1479T	p.Q493H	.	.	.
CTSF	8722	broad.mit.edu	36	11	66088674	66088674	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003793	exon11	c.C1252T	p.R418C	.	.	.
SPTBN2	6712	broad.mit.edu	36	11	66215555	66215555	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006946	exon26	c.G5341A	p.E1781K	.	.	.
SPTBN2	6712	broad.mit.edu	36	11	66223042	66223042	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006946	exon18	c.C3864T	p.H1288H	.	.	.
PC	5091	broad.mit.edu	36	11	66373876	66373876	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040716	exon21	c.C2929T	p.R977W	.	.	.
PC	5091	broad.mit.edu	36	11	66376826	66376826	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040716	exon14	c.C1571A	p.P524H	.	.	.
PC	5091	broad.mit.edu	36	11	66395495	66395495	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040716	exon6	c.C354T	p.Y118Y	.	.	.
ANKRD13D	338692	broad.mit.edu	36	11	66815688	66815688	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207354	exon5	c.C436T	p.R146C	.	.	.
SSH3	54961	broad.mit.edu	36	11	66833551	66833551	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017857	exon11	c.C1169A	p.P390Q	.	.	.
CHKA	1119	broad.mit.edu	36	11	67598865	67598865	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_212469	exon3	c.G471T	p.E157D	.	.	.
C11orf24	53838	broad.mit.edu	36	11	67786637	67786637	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022338	exon4	c.G402A	p.T134T	.	.	.
LRP5	4041	broad.mit.edu	36	11	67947733	67947733	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002335	exon14	c.G3228A	p.A1076A	.	.	.
OR10A2	341276	broad.mit.edu	36	11	6848194	6848194	+	Silent	SNP	C	T	T	rs61737577	unknown	TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004460	exon1	c.C633T	p.A211A	.	.	.
ORAOV1	220064	broad.mit.edu	36	11	69191528	69191528	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153451	exon5	c.G354A	p.S118S	.	.	.
ANO1	55107	broad.mit.edu	36	11	69694792	69694792	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018043	exon22	c.C2349T	p.I783I	.	.	.
IL18BP	10068	broad.mit.edu	36	11	71389934	71389934	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039660	exon4	c.T275C	p.F92S	.	.	.
ARHGEF17	9828	broad.mit.edu	36	11	72750810	72750810	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014786	exon13	c.C4572T	p.Y1524Y	.	.	.
C2CD3	26005	broad.mit.edu	36	11	73528345	73528345	+	Silent	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015531	exon4	c.T660C	p.I220I	.	.	.
OMP	4975	broad.mit.edu	36	11	76491844	76491844	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006189	exon1	c.C311A	p.A104D	.	.	.
MYO7A	4647	broad.mit.edu	36	11	76590209	76590209	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000260	exon36	c.G4921A	p.E1641K	.	.	.
NARS2	79731	broad.mit.edu	36	11	77825494	77825494	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024678	exon14	c.G1304A	p.R435H	.	.	.
NARS2	79731	broad.mit.edu	36	11	77881842	77881842	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024678	exon7	c.A737T	p.N246I	.	.	.
SESN3	143686	broad.mit.edu	36	11	94558252	94558252	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144665	exon5	c.C578T	p.A193V	.	.	.
VWA5A	4013	broad.mit.edu	36	11	123510904	123510904	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014622	exon11	c.1312delG	p.G438fs	.	.	.
CCDC15	80071	broad.mit.edu	36	11	124350259	124350259	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025004	exon5	c.574delA	p.K192fs	.	.	.
PKNOX2	63876	broad.mit.edu	36	11	124743004	124743004	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022062	exon5	c.140delC	p.A47fs	.	.	.
SPI1	6688	broad.mit.edu	36	11	47338013	47338013	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003120	exon3	c.297delC	p.P99fs	.	.	.
DNHD1	144132	broad.mit.edu	36	11	6548067	6548067	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144666	exon41	c.12970delG	p.G4324fs	.	.	.
CREBZF	58487	broad.mit.edu	36	11	85052890	85052892	+	In_Frame_Del	DEL	CTT	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039618	exon1	c.676_678del	p.226_226del	.	.	.
AIM1	202	broad.mit.edu	36	6	107075455	107075455	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001624	exon2	c.G2455A	p.V819I	.	.	.
C6orf203	51250	broad.mit.edu	36	6	107467736	107467736	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142470	exon3	c.C94T	p.R32X	.	.	.
FOXO3	2309	broad.mit.edu	36	6	109091478	109091478	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001455	exon2	c.G749A	p.R250Q	.	.	.
FOXO3	2309	broad.mit.edu	36	6	109092371	109092371	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001455	exon2	c.C1642T	p.R548C	.	.	.
HEY2	23493	broad.mit.edu	36	6	126122028	126122028	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012259	exon5	c.C401T	p.A134V	.	.	.
HEY2	23493	broad.mit.edu	36	6	126122475	126122475	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012259	exon5	c.C848T	p.A283V	.	.	.
RSPO3	84870	broad.mit.edu	36	6	127511650	127511650	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032784	exon2	c.C262T	p.R88X	.	.	.
PTPRK	5796	broad.mit.edu	36	6	128430448	128430448	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002844	exon12	c.A2066T	p.D689V	.	.	.
LAMA2	3908	broad.mit.edu	36	6	129764092	129764092	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001079823	exon38	c.C5476T	p.R1826X	.	.	.
LAMA2	3908	broad.mit.edu	36	6	129854877	129854877	+	Silent	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001079823	exon56	c.T8025C	p.P2675P	.	.	.
MYB	4602	broad.mit.edu	36	6	135560094	135560094	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001161656	exon10	c.C1497T	p.D499D	.	.	.
AHI1	54806	broad.mit.edu	36	6	135686098	135686098	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017651	exon24	c.G3223A	p.G1075R	.	.	.
GPR126	57211	broad.mit.edu	36	6	142746668	142746668	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198569	exon6	c.G1217T	p.R406M	.	.	.
HIVEP2	3097	broad.mit.edu	36	6	143132688	143132688	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006734	exon5	c.G4881A	p.T1627T	.	.	.
HIVEP2	3097	broad.mit.edu	36	6	143137054	143137054	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006734	exon5	c.A515G	p.Q172R	.	.	.
STX11	8676	broad.mit.edu	36	6	144549936	144549936	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003764	exon2	c.G479A	p.R160H	.	.	.
KATNA1	11104	broad.mit.edu	36	6	149964564	149964564	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007044	exon6	c.C747T	p.G249G	.	.	.
RAET1G	353091	broad.mit.edu	36	6	150282578	150282578	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001788	exon2	c.G153A	p.A51A	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152574391	152574391	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015293	exon39	c.G6092A	p.R2031H	.	.	.
TIAM2	26230	broad.mit.edu	36	6	155492328	155492328	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012454	exon3	c.G279A	p.T93T	.	.	.
TAGAP	117289	broad.mit.edu	36	6	159376912	159376912	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_054114	exon10	c.C2131T	p.R711X	.	.	.
TAGAP	117289	broad.mit.edu	36	6	159377687	159377687	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_054114	exon10	c.G1356A	p.P452P	.	.	.
IGF2R	3482	broad.mit.edu	36	6	160414295	160414295	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000876	exon34	c.T4751C	p.V1584A	.	.	.
MAP3K4	4216	broad.mit.edu	36	6	161389958	161389958	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006724	exon3	c.C664T	p.R222C	.	.	.
AGPAT4	56895	broad.mit.edu	36	6	161507287	161507287	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020133	exon3	c.C331T	p.R111C	.	.	.
GMPR	2766	broad.mit.edu	36	6	16394016	16394016	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006877	exon7	c.C668T	p.T223M	.	.	.
ATXN1	6310	broad.mit.edu	36	6	16435038	16435038	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000332	exon8	c.G1483A	p.G495S	.	.	.
ATXN1	6310	broad.mit.edu	36	6	16435441	16435441	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000332	exon8	c.C1080T	p.H360H	.	.	.
FRMD1	79981	broad.mit.edu	36	6	168205351	168205351	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001122841	exon8	c.C826T	p.R276W	.	.	.
DLL1	28514	broad.mit.edu	36	6	170439420	170439420	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005618	exon4	c.C502T	p.R168C	.	.	.
FAM120B	84498	broad.mit.edu	36	6	170509279	170509279	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032448	exon6	c.C2231T	p.A744V	.	.	.
KIF13A	63971	broad.mit.edu	36	6	17942249	17942249	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022113	exon12	c.C1188T	p.L396L	.	.	.
BTN3A1	11119	broad.mit.edu	36	6	26517822	26517822	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145009	exon5	c.C798T	p.A266A	.	.	.
NQO2	4835	broad.mit.edu	36	6	2957825	2957825	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000904	exon4	c.A221G	p.E74G	.	.	.
TUBB	203068	broad.mit.edu	36	6	30799430	30799430	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178014	exon4	c.C612T	p.N204N	.	.	.
TUBB2A	7280	broad.mit.edu	36	6	3099185	3099185	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001069	exon4	c.G1249A	p.D417N	.	.	.
EHMT2	10919	broad.mit.edu	36	6	31962554	31962554	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025256	exon16	c.C2116T	p.R706C	.	.	.
SLC39A7	7922	broad.mit.edu	36	6	33279302	33279302	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006979	exon7	c.C1144T	p.R382C	.	.	.
ITPR3	3710	broad.mit.edu	36	6	33765082	33765082	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002224	exon50	c.C6784T	p.R2262C	.	.	.
PACSIN1	29993	broad.mit.edu	36	6	34604535	34604535	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020804	exon4	c.C359T	p.A120V	.	.	.
SRPK1	6732	broad.mit.edu	36	6	35945451	35945451	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003137	exon11	c.C1197A	p.S399R	.	.	.
FAM50B	26240	broad.mit.edu	36	6	3795706	3795706	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012135	exon2	c.G662A	p.R221H	.	.	.
PGC	5225	broad.mit.edu	36	6	41820164	41820164	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166424	exon3	c.G277A	p.G93S	.	.	.
GUCA1B	2979	broad.mit.edu	36	6	42260620	42260620	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002098	exon4	c.C514T	p.R172W	.	.	.
CUL9	23113	broad.mit.edu	36	6	43292130	43292130	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015089	exon31	c.G6193A	p.V2065I	.	.	.
CLIC5	53405	broad.mit.edu	36	6	45978820	45978820	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016929	exon6	c.C739T	p.R247C	.	.	.
TDRD6	221400	broad.mit.edu	36	6	46765723	46765723	+	Silent	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010870	exon1	c.T1899C	p.I633I	.	.	.
BAI3	577	broad.mit.edu	36	6	69722717	69722717	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001704	exon7	c.C1276A	p.Q426K	.	.	.
C6orf221	154288	broad.mit.edu	36	6	74130163	74130163	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017361	exon3	c.G513A	p.P171P	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75932127	75932127	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004370	exon14	c.C2799T	p.R933R	.	.	.
FILIP1	27145	broad.mit.edu	36	6	76079038	76079038	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015687	exon5	c.G3230A	p.R1077Q	.	.	.
MYO6	4646	broad.mit.edu	36	6	76653368	76653368	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004999	exon25	c.C2595T	p.P865P	.	.	.
PHIP	55023	broad.mit.edu	36	6	79763939	79763939	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017934	exon19	c.C2112T	p.N704N	.	.	.
TPBG	7162	broad.mit.edu	36	6	83132000	83132000	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166392	exon2	c.G603A	p.A201A	.	.	.
C6orf165	154313	broad.mit.edu	36	6	88227470	88227470	+	Silent	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031743	exon12	c.T1506C	p.A502A	.	.	.
BACH2	60468	broad.mit.edu	36	6	90775170	90775170	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021813	exon6	c.G115A	p.V39M	.	.	.
FUT9	10690	broad.mit.edu	36	6	96758228	96758228	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006581	exon3	c.G476A	p.R159H	.	.	.
PACRG	135138	broad.mit.edu	36	6	163069268	163069269	+	Frame_Shift_Del	DEL	AA	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080378	exon2	c.11_12del	p.4_4del	.	.	.
DLL1	28514	broad.mit.edu	36	6	170434754	170434754	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005618	exon9	c.1538delG	p.G513fs	.	.	.
BAT5	7920	broad.mit.edu	36	6	31762997	31762997	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177515	exon18	c.1549delC	p.Q517fs	.	.	.
HLA-DQB1	3119	broad.mit.edu	36	6	32737848	32737848	+	Frame_Shift_Del	DEL	G	-	-	rs9273971	unknown	TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002123	exon3	c.535delC	p.L179fs	.	.	.
KCTD20	222658	broad.mit.edu	36	6	36560554	36560554	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173562	exon7	c.942delA	p.L314fs	.	.	.
RIMS1	22999	broad.mit.edu	36	6	73057141	73057141	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014989	exon25	c.3593delC	p.A1198fs	.	.	.
TUSC5	286753	broad.mit.edu	36	17	1145649	1145649	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172367	exon2	c.G502A	p.V168M	.	.	.
YWHAE	7531	broad.mit.edu	36	17	1211216	1211216	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006761	exon4	c.G498A	p.T166T	.	.	.
ARHGAP44	9912	broad.mit.edu	36	17	12828694	12828694	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014859	exon20	c.G2061A	p.P687P	.	.	.
RPH3AL	9501	broad.mit.edu	36	17	169336	169336	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001190413	exon4	c.C226T	p.L76L	.	.	.
COPS3	8533	broad.mit.edu	36	17	17106122	17106122	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003653	exon7	c.G645A	p.A215A	.	.	.
MYO15A	51168	broad.mit.edu	36	17	18022840	18022840	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016239	exon65	c.C10524T	p.H3508H	.	.	.
PRPSAP2	5636	broad.mit.edu	36	17	18711321	18711321	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002767	exon4	c.C121T	p.R41W	.	.	.
EPN2	22905	broad.mit.edu	36	17	19172655	19172655	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014964	exon8	c.C1186T	p.P396S	.	.	.
MNT	4335	broad.mit.edu	36	17	2237016	2237016	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020310	exon6	c.C1678T	p.Q560X	.	.	.
METT10D	79066	broad.mit.edu	36	17	2270875	2270875	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024086	exon9	c.T962C	p.M321T	.	.	.
METT10D	79066	broad.mit.edu	36	17	2327910	2327910	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024086	exon3	c.G148A	p.E50K	.	.	.
VTN	7448	broad.mit.edu	36	17	23719021	23719021	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000638	exon7	c.G1166A	p.R389H	.	.	.
PROCA1	147011	broad.mit.edu	36	17	24054974	24054974	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152465	exon4	c.C740A	p.P247H	.	.	.
NEK8	284086	broad.mit.edu	36	17	24086090	24086090	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178170	exon3	c.G427A	p.V143I	.	.	.
C17orf63	55731	broad.mit.edu	36	17	24109601	24109601	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001077498	exon3	c.C1502T	p.A501V	.	.	.
C17orf97	400566	broad.mit.edu	36	17	263462	263462	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013672	exon2	c.G512A	p.R171H	.	.	.
LRRC37B	114659	broad.mit.edu	36	17	27372762	27372762	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052888	exon1	c.C484T	p.R162W	.	.	.
RFFL	117584	broad.mit.edu	36	17	30377684	30377684	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017368	exon2	c.T2C	p.M1T	.	.	.
NLE1	54475	broad.mit.edu	36	17	30484479	30484479	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001014445	exon10	c.G490A	p.A164T	.	.	.
ACACA	31	broad.mit.edu	36	17	32683955	32683955	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198834	exon15	c.G1947A	p.W649X	.	.	.
SRCIN1	80725	broad.mit.edu	36	17	33961803	33961803	+	Missense_Mutation	SNP	C	T	T	rs7222929	by-cluster,by-frequency,by-hapmap	TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025248	exon14	c.G2572A	p.V858M	.	.	.
FBXO47	494188	broad.mit.edu	36	17	34371682	34371682	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008777	exon3	c.C326T	p.A109V	.	.	.
CDK12	51755	broad.mit.edu	36	17	34927293	34927293	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016507	exon10	c.C2921T	p.P974L	.	.	.
KRT26	353288	broad.mit.edu	36	17	36176341	36176341	+	Silent	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181539	exon8	c.A1359G	p.K453K	.	.	.
KRTAP3-2	83897	broad.mit.edu	36	17	36409611	36409611	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031959	exon1	c.C21T	p.R7R	.	.	.
KRT38	8687	broad.mit.edu	36	17	36850332	36850332	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006771	exon1	c.G368A	p.R123H	.	.	.
KRT19	3880	broad.mit.edu	36	17	36934729	36934729	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002276	exon3	c.C552T	p.N184N	.	.	.
NT5C3L	115024	broad.mit.edu	36	17	37237329	37237329	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052935	exon8	c.T643C	p.Y215H	.	.	.
CNTNAP1	8506	broad.mit.edu	36	17	38097045	38097045	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003632	exon15	c.C2334T	p.C778C	.	.	.
ZZEF1	23140	broad.mit.edu	36	17	3864441	3864441	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015113	exon50	c.C8263T	p.R2755X	.	.	.
CD300LG	146894	broad.mit.edu	36	17	39290026	39290026	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001168323	exon5	c.C759T	p.N253N	.	.	.
ITGA2B	3674	broad.mit.edu	36	17	39813328	39813328	+	De_novo_Start_OutOfFrame	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000419	exon15	c.C1496A	p.P499H	.	.	.
EFTUD2	9343	broad.mit.edu	36	17	40319630	40319630	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004247	exon3	c.C120T	p.D40D	.	.	.
HEXIM2	124790	broad.mit.edu	36	17	40602205	40602205	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144608	exon4	c.G107A	p.R36H	.	.	.
IMP5	162540	broad.mit.edu	36	17	41279149	41279149	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175882	exon1	c.G1097A	p.R366H	.	.	.
MYBBP1A	10514	broad.mit.edu	36	17	4389651	4389651	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014520	exon26	c.C3795T	p.P1265P	.	.	.
HOXB5	3215	broad.mit.edu	36	17	44025753	44025753	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002147	exon1	c.C291T	p.P97P	.	.	.
HOXB6	3216	broad.mit.edu	36	17	44028910	44028910	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018952	exon4	c.C539T	p.A180V	.	.	.
HOXB7	3217	broad.mit.edu	36	17	44040368	44040368	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004502	exon2	c.G489A	p.T163T	.	.	.
HOXB9	3219	broad.mit.edu	36	17	44058218	44058218	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024017	exon1	c.T413C	p.L138S	.	.	.
LRRC59	55379	broad.mit.edu	36	17	45815469	45815469	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018509	exon7	c.T803A	p.V268E	.	.	.
SPATA20	64847	broad.mit.edu	36	17	45982593	45982593	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022827	exon9	c.G1019A	p.R340H	.	.	.
WFIKKN2	124857	broad.mit.edu	36	17	46272619	46272619	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175575	exon2	c.C971T	p.P324L	.	.	.
CUEDC1	404093	broad.mit.edu	36	17	53305156	53305156	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017949	exon5	c.G651A	p.G217G	.	.	.
EPX	8288	broad.mit.edu	36	17	53626142	53626142	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000502	exon4	c.G415A	p.E139K	.	.	.
MPO	4353	broad.mit.edu	36	17	53704218	53704218	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000250	exon11	c.G1827A	p.P609P	.	.	.
SEPT4	5414	broad.mit.edu	36	17	53958075	53958075	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080416	exon4	c.G461A	p.R154Q	.	.	.
MED13	9969	broad.mit.edu	36	17	57397149	57397149	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005121	exon20	c.G4844T	p.S1615I	.	.	.
MED13	9969	broad.mit.edu	36	17	57416954	57416954	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005121	exon14	c.T2531C	p.I844T	.	.	.
SCN4A	6329	broad.mit.edu	36	17	59403457	59403457	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000334	exon2	c.G379A	p.V127M	.	.	.
GNA13	10672	broad.mit.edu	36	17	60441035	60441035	+	Silent	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006572	exon4	c.T936C	p.F312F	.	.	.
AXIN2	8313	broad.mit.edu	36	17	60976225	60976225	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004655	exon3	c.C831T	p.S277S	.	.	.
ABCA9	10350	broad.mit.edu	36	17	64493978	64493978	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080283	exon32	c.T4130C	p.L1377P	.	.	.
KIAA0753	9851	broad.mit.edu	36	17	6454198	6454198	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014804	exon9	c.C1552T	p.R518C	.	.	.
TEKT1	83659	broad.mit.edu	36	17	6644843	6644843	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_053285	exon7	c.C996T	p.V332V	.	.	.
C17orf80	55028	broad.mit.edu	36	17	68743468	68743468	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001100622	exon3	c.C252T	p.D84D	.	.	.
CD300E	342510	broad.mit.edu	36	17	70121699	70121699	+	Nonsense_Mutation	SNP	G	A	A	rs61748965	unknown	TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181449	exon3	c.C457T	p.R153X	.	.	.
RAB37	326624	broad.mit.edu	36	17	70237099	70237099	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175738	exon2	c.C182T	p.T61M	.	.	.
USH1G	124590	broad.mit.edu	36	17	70428227	70428227	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173477	exon2	c.C299T	p.T100M	.	.	.
SRP68	6730	broad.mit.edu	36	17	71571764	71571764	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014230	exon4	c.G449A	p.R150Q	.	.	.
FOXJ1	2302	broad.mit.edu	36	17	71647742	71647742	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001454	exon2	c.C330T	p.D110D	.	.	.
ST6GALNAC1	55808	broad.mit.edu	36	17	72151293	72151293	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018414	exon1	c.G23A	p.C8Y	.	.	.
MXRA7	439921	broad.mit.edu	36	17	72185323	72185323	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008528	exon4	c.C557T	p.T186M	.	.	.
NLGN2	57555	broad.mit.edu	36	17	7259838	7259838	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020795	exon6	c.G1322A	p.R441Q	.	.	.
AFMID	125061	broad.mit.edu	36	17	73712367	73712367	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010982	exon5	c.C344T	p.T115M	.	.	.
ENGASE	64772	broad.mit.edu	36	17	74587939	74587939	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042573	exon5	c.C621T	p.A207A	.	.	.
TP53	7157	broad.mit.edu	36	17	7520038	7520038	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126114	exon4	c.C374T	p.T125M	.	.	.
CBX2	84733	broad.mit.edu	36	17	75372333	75372333	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005189	exon5	c.C496T	p.R166X	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7577215	7577215	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020877	exon4	c.C485T	p.T162M	.	.	.
RPTOR	57521	broad.mit.edu	36	17	76473416	76473416	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020761	exon17	c.C1856T	p.A619V	.	.	.
RPTOR	57521	broad.mit.edu	36	17	76549805	76549805	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020761	exon31	c.C3622T	p.R1208W	.	.	.
ZNF750	79755	broad.mit.edu	36	17	78381365	78381365	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024702	exon3	c.C2114T	p.A705V	.	.	.
TBCD	6904	broad.mit.edu	36	17	78480408	78480408	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005993	exon31	c.C2824T	p.R942X	.	.	.
GUCY2D	3000	broad.mit.edu	36	17	7856331	7856331	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000180	exon9	c.G1894A	p.A632T	.	.	.
GUCY2D	3000	broad.mit.edu	36	17	7857940	7857940	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000180	exon12	c.C2281T	p.R761W	.	.	.
TIMM22	29928	broad.mit.edu	36	17	847253	847253	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013337	exon1	c.C121T	p.L41F	.	.	.
GLP2R	9340	broad.mit.edu	36	17	9733661	9733661	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004246	exon13	c.C1576T	p.R526W	.	.	.
PRPF8	10594	broad.mit.edu	36	17	1531673	1531674	+	Frame_Shift_Del	DEL	AG	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006445	exon6	c.714_715del	p.238_239del	.	.	.
TMPRSS15	5651	broad.mit.edu	36	21	18692484	18692484	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002772	exon2	c.C179T	p.A60V	.	.	.
TIAM1	7074	broad.mit.edu	36	21	31459247	31459247	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003253	exon17	c.G2894A	p.S965N	.	.	.
C2CD2	25966	broad.mit.edu	36	21	42200953	42200953	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199050	exon8	c.C563T	p.A188V	.	.	.
CRYAA	1409	broad.mit.edu	36	21	43465252	43465252	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000394	exon3	c.C315T	p.D105D	.	.	.
TRAPPC10	7109	broad.mit.edu	36	21	44308046	44308046	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003274	exon7	c.C990T	p.R330R	.	.	.
UNKL	64718	broad.mit.edu	36	16	1393206	1393206	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001037125	exon3	c.G428A	p.G143D	.	.	.
CLCN7	1186	broad.mit.edu	36	16	1445229	1445229	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001114331	exon11	c.G933A	p.T311T	.	.	.
IFT140	9742	broad.mit.edu	36	16	1508242	1508242	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014714	exon30	c.C4158T	p.Y1386Y	.	.	.
IFT140	9742	broad.mit.edu	36	16	1513849	1513849	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014714	exon25	c.C3251T	p.A1084V	.	.	.
ABCC6	368	broad.mit.edu	36	16	16156316	16156316	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171	exon28	c.C3956T	p.A1319V	.	.	.
ABCC6	368	broad.mit.edu	36	16	16199467	16199467	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171	exon10	c.T1250C	p.V417A	.	.	.
MAPK8IP3	23162	broad.mit.edu	36	16	1752464	1752464	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040439	exon13	c.C1630T	p.R544W	.	.	.
SMG1	23049	broad.mit.edu	36	16	18777033	18777033	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015092	exon29	c.G4194A	p.R1398R	.	.	.
GPRC5B	51704	broad.mit.edu	36	16	19780772	19780772	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016235	exon3	c.A1055G	p.N352S	.	.	.
TSC2	7249	broad.mit.edu	36	16	2040433	2040433	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001114382	exon3	c.G170A	p.R57H	.	.	.
OTOA	146183	broad.mit.edu	36	16	21645383	21645383	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144672	exon18	c.T1919C	p.V640A	.	.	.
VWA3A	146177	broad.mit.edu	36	16	22071339	22071339	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173615	exon31	c.G3288A	p.A1096A	.	.	.
POLR3E	55718	broad.mit.edu	36	16	22244651	22244651	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018119	exon18	c.G1417A	p.A473T	.	.	.
ABCA3	21	broad.mit.edu	36	16	2287506	2287506	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001089	exon17	c.C2088T	p.D696D	.	.	.
USP31	57478	broad.mit.edu	36	16	22992671	22992671	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020718	exon14	c.G2208A	p.W736X	.	.	.
IL21R	50615	broad.mit.edu	36	16	27367566	27367566	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181079	exon10	c.G1144A	p.G382S	.	.	.
KIAA0556	23247	broad.mit.edu	36	16	27627670	27627670	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015202	exon13	c.G1533A	p.S511S	.	.	.
XPO6	23214	broad.mit.edu	36	16	28017420	28017420	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015171	exon24	c.C3318T	p.N1106N	.	.	.
LAT	27040	broad.mit.edu	36	16	28905250	28905250	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001014989	exon6	c.C400T	p.R134W	.	.	.
SEZ6L2	26470	broad.mit.edu	36	16	29804510	29804510	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001114100	exon6	c.G928A	p.D310N	.	.	.
TAOK2	9344	broad.mit.edu	36	16	29900516	29900516	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004783	exon9	c.C689T	p.A230V	.	.	.
ZNF768	79724	broad.mit.edu	36	16	30444660	30444660	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024671	exon2	c.C302T	p.A101V	.	.	.
ZNF668	79759	broad.mit.edu	36	16	30980820	30980820	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172669	exon4	c.C999T	p.C333C	.	.	.
BCKDK	10295	broad.mit.edu	36	16	31028388	31028388	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001122957	exon3	c.G251A	p.G84D	.	.	.
PRSS36	146547	broad.mit.edu	36	16	31059148	31059148	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173502	exon14	c.C2257T	p.L753L	.	.	.
ITGAM	3684	broad.mit.edu	36	16	31216410	31216410	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000632	exon13	c.C1431T	p.I477I	.	.	.
TMEM8A	58986	broad.mit.edu	36	16	366266	366266	+	Silent	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021259	exon6	c.G1095T	p.S365S	.	.	.
CREBBP	1387	broad.mit.edu	36	16	3718019	3718019	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004380	exon31	c.C7030T	p.R2344W	.	.	.
CREBBP	1387	broad.mit.edu	36	16	3760704	3760704	+	Silent	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004380	exon14	c.T2748C	p.P916P	.	.	.
CREBBP	1387	broad.mit.edu	36	16	3768112	3768112	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004380	exon10	c.C2014T	p.R672C	.	.	.
DNAJA3	9093	broad.mit.edu	36	16	4432300	4432300	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135110	exon5	c.G661A	p.A221T	.	.	.
ITFG1	81533	broad.mit.edu	36	16	45753968	45753968	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030790	exon15	c.G1562A	p.R521H	.	.	.
ZNF423	23090	broad.mit.edu	36	16	48228653	48228653	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015069	exon5	c.C1911T	p.C637C	.	.	.
IRX6	79190	broad.mit.edu	36	16	53920318	53920318	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024335	exon5	c.C927T	p.C309C	.	.	.
CES5A	221223	broad.mit.edu	36	16	54441181	54441181	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143685	exon11	c.G1279A	p.G427S	.	.	.
CETP	1071	broad.mit.edu	36	16	55560881	55560881	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000078	exon3	c.G316A	p.V106M	.	.	.
GPR114	221188	broad.mit.edu	36	16	56159416	56159416	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153837	exon9	c.C969T	p.Y323Y	.	.	.
GOT2	2806	broad.mit.edu	36	16	57309652	57309652	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002080	exon6	c.G651A	p.T217T	.	.	.
KCTD19	146212	broad.mit.edu	36	16	65890810	65890810	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001100915	exon6	c.C943T	p.R315X	.	.	.
PARD6A	50855	broad.mit.edu	36	16	66253551	66253551	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001037281	exon3	c.G538A	p.V180M	.	.	.
PARD6A	50855	broad.mit.edu	36	16	66253723	66253723	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001037281	exon3	c.A710C	p.N237T	.	.	.
EDC4	23644	broad.mit.edu	36	16	66468702	66468702	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014329	exon5	c.G533A	p.S178N	.	.	.
ESRP2	80004	broad.mit.edu	36	16	66823250	66823250	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024939	exon10	c.C1255T	p.R419X	.	.	.
HAS3	3038	broad.mit.edu	36	16	67709820	67709820	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138612	exon4	c.C800T	p.T267M	.	.	.
PDPR	55066	broad.mit.edu	36	16	68720188	68720188	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017990	exon5	c.G362A	p.G121D	.	.	.
FUK	197258	broad.mit.edu	36	16	69070618	69070618	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145059	exon23	c.G2964A	p.S988S	.	.	.
CALB2	794	broad.mit.edu	36	16	69981225	69981225	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001740	exon11	c.C772T	p.R258C	.	.	.
ZNF23	7571	broad.mit.edu	36	16	70040122	70040122	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145911	exon6	c.G1307A	p.R436Q	.	.	.
MARVELD3	91862	broad.mit.edu	36	16	70232384	70232384	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017967	exon3	c.G1186A	p.G396R	.	.	.
HPR	3250	broad.mit.edu	36	16	70667766	70667766	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020995	exon5	c.C332T	p.A111V	.	.	.
DHX38	9785	broad.mit.edu	36	16	70695015	70695015	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014003	exon13	c.G1651A	p.V551M	.	.	.
DHX38	9785	broad.mit.edu	36	16	70695942	70695942	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014003	exon15	c.G2067A	p.A689A	.	.	.
ZFHX3	463	broad.mit.edu	36	16	71551087	71551087	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006885	exon2	c.C459T	p.G153G	.	.	.
ADAMTS18	170692	broad.mit.edu	36	16	75958881	75958881	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199355	exon4	c.C736T	p.R246X	.	.	.
CLEC3A	10143	broad.mit.edu	36	16	76622013	76622013	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005752	exon3	c.C368T	p.P123L	.	.	.
WWOX	51741	broad.mit.edu	36	16	76706517	76706517	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130791	exon4	c.A374G	p.K125R	.	.	.
WWOX	51741	broad.mit.edu	36	16	76978308	76978308	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016373	exon6	c.C567T	p.S189S	.	.	.
CMIP	80790	broad.mit.edu	36	16	80261267	80261267	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030629	exon8	c.G563A	p.R188Q	.	.	.
MBTPS1	8720	broad.mit.edu	36	16	82682850	82682850	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003791	exon7	c.G951A	p.P317P	.	.	.
KCNG4	93107	broad.mit.edu	36	16	82813957	82813957	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172347	exon3	c.G927A	p.S309S	.	.	.
KIAA1609	57707	broad.mit.edu	36	16	83086937	83086937	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020947	exon3	c.G237A	p.A79A	.	.	.
ZCCHC14	23174	broad.mit.edu	36	16	86002773	86002773	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015144	exon12	c.A2644T	p.T882S	.	.	.
ZC3H18	124245	broad.mit.edu	36	16	87217903	87217903	+	Silent	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144604	exon11	c.A1830G	p.P610P	.	.	.
ANKRD11	29123	broad.mit.edu	36	16	87874988	87874988	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013275	exon9	c.C5463T	p.Y1821Y	.	.	.
DBNDD1	79007	broad.mit.edu	36	16	88603316	88603316	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024043	exon2	c.C115T	p.P39S	.	.	.
COG7	91949	broad.mit.edu	36	16	23343715	23343715	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153603	exon7	c.865delG	p.A289fs	.	.	.
AQP8	343	broad.mit.edu	36	16	25140376	25140376	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001169	exon3	c.358delG	p.G120fs	.	.	.
SLC5A2	6524	broad.mit.edu	36	16	31403649	31403652	+	Frame_Shift_Del	DEL	CTCT	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003041	exon3	c.207_210del	p.69_70del	.	.	.
IRX3	79191	broad.mit.edu	36	16	52876588	52876588	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024336	exon2	c.706delG	p.E236fs	.	.	.
ZNF469	84627	broad.mit.edu	36	16	87022007	87022007	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127464	exon1	c.628delC	p.P210fs	.	.	.
ZC3H18	124245	broad.mit.edu	36	16	87221960	87221960	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144604	exon15	c.2401delC	p.P801fs	.	.	.
CEP192	55125	broad.mit.edu	36	18	13085600	13085600	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032142	exon35	c.G6353A	p.R2118H	.	.	.
CDH2	1000	broad.mit.edu	36	18	23819019	23819019	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001792	exon13	c.G2152A	p.A718T	.	.	.
ATP5A1	498	broad.mit.edu	36	18	41921339	41921339	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004046	exon7	c.A917G	p.H306R	.	.	.
TCF4	6925	broad.mit.edu	36	18	51405275	51405275	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001083962	exon2	c.C71T	p.A24V	.	.	.
NEDD4L	23327	broad.mit.edu	36	18	54208876	54208876	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015277	exon28	c.G2614A	p.A872T	.	.	.
CDH19	28513	broad.mit.edu	36	18	62386780	62386780	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021153	exon3	c.T343G	p.L115V	.	.	.
FBXO15	201456	broad.mit.edu	36	18	69891927	69891927	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152676	exon10	c.G1054A	p.V352I	.	.	.
PTPRM	5797	broad.mit.edu	36	18	7764263	7764263	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002845	exon2	c.C190T	p.P64S	.	.	.
PTPRM	5797	broad.mit.edu	36	18	8103645	8103645	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002845	exon12	c.C2018T	p.A673V	.	.	.
RALBP1	10928	broad.mit.edu	36	18	9503167	9503167	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006788	exon2	c.T124C	p.Y42H	.	.	.
FHOD3	80206	broad.mit.edu	36	18	32459514	32459514	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025135	exon10	c.1000delC	p.P334fs	.	.	.
ANKRD12	23253	broad.mit.edu	36	18	9245261	9245261	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015208	exon9	c.1996delA	p.K666fs	.	.	.
ABI3BP	25890	broad.mit.edu	36	3	102052257	102052257	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015429	exon14	c.C1237T	p.R413C	.	.	.
TATDN2	9797	broad.mit.edu	36	3	10287487	10287487	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014760	exon4	c.C1621T	p.R541C	.	.	.
CEP97	79598	broad.mit.edu	36	3	102964056	102964056	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024548	exon10	c.T1855A	p.F619I	.	.	.
WDR52	55779	broad.mit.edu	36	3	114598165	114598165	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164496	exon14	c.C1669T	p.R557W	.	.	.
KIAA1407	57577	broad.mit.edu	36	3	115207456	115207456	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020817	exon10	c.G1457T	p.S486I	.	.	.
ZBTB20	26137	broad.mit.edu	36	3	115552610	115552610	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164343	exon11	c.C786T	p.D262D	.	.	.
CASR	846	broad.mit.edu	36	3	123463736	123463736	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000388	exon4	c.G1164A	p.S388S	.	.	.
ADCY5	111	broad.mit.edu	36	3	124521352	124521352	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_183357	exon10	c.C2115T	p.N705N	.	.	.
SLC41A3	54946	broad.mit.edu	36	3	127214219	127214219	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008485	exon9	c.G1034A	p.S345N	.	.	.
TMEM40	55287	broad.mit.edu	36	3	12760415	12760415	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018306	exon4	c.C285T	p.H95H	.	.	.
CCDC37	348807	broad.mit.edu	36	3	127620245	127620245	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182628	exon7	c.C588T	p.D196D	.	.	.
CAND2	23066	broad.mit.edu	36	3	12820082	12820082	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001162499	exon2	c.G164A	p.R55Q	.	.	.
PLXND1	23129	broad.mit.edu	36	3	130764467	130764467	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015103	exon27	c.G4678A	p.V1560M	.	.	.
CPNE4	131034	broad.mit.edu	36	3	132744222	132744222	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130808	exon15	c.G1408A	p.V470M	.	.	.
DNAJC13	23317	broad.mit.edu	36	3	133654843	133654843	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015268	exon7	c.G549A	p.A183A	.	.	.
C3orf36	80111	broad.mit.edu	36	3	135129997	135129997	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025041	exon1	c.T341G	p.L114R	.	.	.
PLS1	5357	broad.mit.edu	36	3	143872641	143872641	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002670	exon4	c.G351A	p.Q117Q	.	.	.
GRIP2	80852	broad.mit.edu	36	3	14511476	14511476	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080423	exon24	c.G3139A	p.G1047S	.	.	.
TM4SF4	7104	broad.mit.edu	36	3	150699237	150699237	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004617	exon4	c.G440A	p.R147Q	.	.	.
P2RY12	64805	broad.mit.edu	36	3	152538777	152538777	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022788	exon3	c.G547A	p.G183S	.	.	.
P2RY1	5028	broad.mit.edu	36	3	154037139	154037139	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002563	exon1	c.C878A	p.P293Q	.	.	.
DHX36	170506	broad.mit.edu	36	3	155510183	155510183	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001114397	exon5	c.G766A	p.A256T	.	.	.
TNIK	23043	broad.mit.edu	36	3	172326499	172326499	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001161565	exon15	c.C1657T	p.R553C	.	.	.
FNDC3B	64778	broad.mit.edu	36	3	173451949	173451949	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135095	exon6	c.C714T	p.S238S	.	.	.
PIK3CA	5290	broad.mit.edu	36	3	180430773	180430773	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006218	exon20	c.C2851T	p.R951C	.	.	.
MCF2L2	23101	broad.mit.edu	36	3	184579888	184579888	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015078	exon3	c.C166T	p.R56X	.	.	.
DVL3	1857	broad.mit.edu	36	3	185365060	185365060	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004423	exon4	c.G440A	p.R147H	.	.	.
CLCN2	1181	broad.mit.edu	36	3	185557924	185557924	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004366	exon8	c.G818A	p.R273Q	.	.	.
BCL6	604	broad.mit.edu	36	3	188928964	188928964	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130845	exon6	c.C1418T	p.P473L	.	.	.
C3orf59	151963	broad.mit.edu	36	3	193999420	193999420	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178496	exon2	c.G925A	p.A309T	.	.	.
HRASLS	57110	broad.mit.edu	36	3	194463518	194463518	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020386	exon3	c.C205T	p.Q69X	.	.	.
LRRC15	131578	broad.mit.edu	36	3	195561658	195561658	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130830	exon2	c.C1410T	p.N470N	.	.	.
NGLY1	55768	broad.mit.edu	36	3	25736045	25736045	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145294	exon12	c.C1749T	p.V583V	.	.	.
MLH1	4292	broad.mit.edu	36	3	37045328	37045328	+	Nonsense_Mutation	SNP	C	T	T	rs63749795	unknown	TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000249	exon13	c.C1459T	p.R487X	.	.	.
ACAA1	30	broad.mit.edu	36	3	38143135	38143135	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130410	exon7	c.G588A	p.T196T	.	.	.
MYRIP	25924	broad.mit.edu	36	3	40060630	40060630	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015460	exon3	c.C196T	p.R66C	.	.	.
TRAK1	22906	broad.mit.edu	36	3	42226397	42226397	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042646	exon14	c.G1879A	p.D627N	.	.	.
ABHD5	51099	broad.mit.edu	36	3	43719004	43719004	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016006	exon3	c.G427T	p.G143X	.	.	.
LARS2	23395	broad.mit.edu	36	3	45475315	45475315	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015340	exon8	c.G683A	p.R228H	.	.	.
XCR1	2829	broad.mit.edu	36	3	46037779	46037779	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001024644	exon2	c.G665A	p.R222H	.	.	.
NBEAL2	23218	broad.mit.edu	36	3	47017870	47017870	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015175	exon29	c.C4582T	p.R1528C	.	.	.
PLXNB1	5364	broad.mit.edu	36	3	48438570	48438570	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002673	exon6	c.T1468C	p.S490P	.	.	.
P4HTM	54681	broad.mit.edu	36	3	49015002	49015002	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_177938	exon4	c.C693T	p.Y231Y	.	.	.
NICN1	84276	broad.mit.edu	36	3	49438817	49438817	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032316	exon2	c.C181A	p.R61S	.	.	.
MST1R	4486	broad.mit.edu	36	3	49908243	49908243	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002447	exon12	c.G2871A	p.T957T	.	.	.
CACNA2D2	9254	broad.mit.edu	36	3	50391560	50391560	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006030	exon12	c.C1227T	p.D409D	.	.	.
RBM15B	29890	broad.mit.edu	36	3	51405491	51405491	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013286	exon1	c.C1621T	p.R541X	.	.	.
GPR62	118442	broad.mit.edu	36	3	51964819	51964819	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080865	exon1	c.C111T	p.V37V	.	.	.
ALAS1	211	broad.mit.edu	36	3	52217258	52217258	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000688	exon9	c.C1285T	p.R429W	.	.	.
GLYCTK	132158	broad.mit.edu	36	3	52301875	52301875	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145262	exon5	c.G1265A	p.R422Q	.	.	.
DNAH1	25981	broad.mit.edu	36	3	52382094	52382094	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015512	exon44	c.G6970A	p.D2324N	.	.	.
STAB1	23166	broad.mit.edu	36	3	52513547	52513547	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015136	exon11	c.C1181T	p.A394V	.	.	.
STAB1	23166	broad.mit.edu	36	3	52515273	52515273	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015136	exon17	c.G1797A	p.A599A	.	.	.
STAB1	23166	broad.mit.edu	36	3	52532300	52532300	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015136	exon64	c.C7043T	p.A2348V	.	.	.
ITIH1	3697	broad.mit.edu	36	3	52796057	52796057	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166434	exon12	c.C1364T	p.S455L	.	.	.
ITIH3	3699	broad.mit.edu	36	3	52810162	52810162	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002217	exon11	c.G1343T	p.R448L	.	.	.
CACNA1D	776	broad.mit.edu	36	3	53820230	53820230	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128839	exon46	c.G6171A	p.V2057V	.	.	.
CHDH	55349	broad.mit.edu	36	3	53831661	53831661	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018397	exon4	c.G752A	p.R251H	.	.	.
MAGI1	9223	broad.mit.edu	36	3	65317625	65317625	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001033057	exon23	c.C3857T	p.S1286L	.	.	.
MAGI1	9223	broad.mit.edu	36	3	65351861	65351861	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015520	exon14	c.C2412T	p.N804N	.	.	.
MITF	4286	broad.mit.edu	36	3	70097046	70097046	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198158	exon9	c.G1199A	p.R400Q	.	.	.
GXYLT2	727936	broad.mit.edu	36	3	73099416	73099416	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080393	exon6	c.G1005A	p.W335X	.	.	.
EBLN2	55096	broad.mit.edu	36	3	73194112	73194112	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018029	exon1	c.G190A	p.A64T	.	.	.
PDZRN3	23024	broad.mit.edu	36	3	73515518	73515518	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015009	exon10	c.G2889A	p.A963A	.	.	.
ROBO2	6092	broad.mit.edu	36	3	77230125	77230125	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128929	exon1	c.T273A	p.C91X	.	.	.
ROBO1	6091	broad.mit.edu	36	3	78746564	78746564	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002941	exon28	c.C4359T	p.A1453A	.	.	.
DHX36	170506	broad.mit.edu	36	3	155524859	155524859	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001114397	exon1	c.41delG	p.G14fs	.	.	.
MCF2L2	23101	broad.mit.edu	36	3	184477358	184477358	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015078	exon15	c.1858delC	p.R620fs	.	.	.
ETV5	2119	broad.mit.edu	36	3	187280495	187280495	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004454	exon7	c.455delC	p.P152fs	.	.	.
MYBPC1	4604	broad.mit.edu	36	12	100560403	100560403	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002465	exon11	c.C741T	p.Y247Y	.	.	.
STAB2	55576	broad.mit.edu	36	12	102607862	102607862	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017564	exon29	c.T3154A	p.S1052T	.	.	.
RFX4	5992	broad.mit.edu	36	12	105519236	105519236	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002920	exon1	c.C52T	p.R18X	.	.	.
CRY1	1407	broad.mit.edu	36	12	106010785	106010785	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004075	exon1	c.G85A	p.D29N	.	.	.
WSCD2	9671	broad.mit.edu	36	12	107128097	107128097	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014653	exon4	c.C567T	p.N189N	.	.	.
SSH1	54434	broad.mit.edu	36	12	107706387	107706387	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018984	exon15	c.G2656A	p.A886T	.	.	.
DAO	1610	broad.mit.edu	36	12	107817325	107817325	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001917	exon10	c.G857A	p.R286H	.	.	.
FOXN4	121643	broad.mit.edu	36	12	108203879	108203879	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_213596	exon9	c.C1010T	p.A337V	.	.	.
IFT81	28981	broad.mit.edu	36	12	109085123	109085123	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143779	exon11	c.G1058A	p.R353H	.	.	.
HVCN1	84329	broad.mit.edu	36	12	109577484	109577484	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032369	exon5	c.C349T	p.L117F	.	.	.
TAS2R14	50840	broad.mit.edu	36	12	10982764	10982764	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023922	exon1	c.G310A	p.G104S	.	.	.
NOS1	4842	broad.mit.edu	36	12	116200261	116200261	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000620	exon9	c.C1550T	p.P517L	.	.	.
NOS1	4842	broad.mit.edu	36	12	116208338	116208338	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000620	exon6	c.G1244A	p.R415Q	.	.	.
CIT	11113	broad.mit.edu	36	12	118634797	118634797	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007174	exon35	c.G4540A	p.A1514T	.	.	.
CIT	11113	broad.mit.edu	36	12	118656397	118656397	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007174	exon25	c.G3179A	p.R1060Q	.	.	.
SNRNP35	11066	broad.mit.edu	36	12	122516452	122516452	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022717	exon2	c.C412T	p.R138W	.	.	.
TMED2	10959	broad.mit.edu	36	12	122635267	122635267	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006815	exon1	c.G131A	p.G44D	.	.	.
DDX55	57696	broad.mit.edu	36	12	122659265	122659265	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020936	exon6	c.C487T	p.R163X	.	.	.
NCOR2	9612	broad.mit.edu	36	12	123406021	123406021	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006312	exon26	c.G3312A	p.P1104P	.	.	.
NCOR2	9612	broad.mit.edu	36	12	123453046	123453046	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006312	exon16	c.G1497A	p.Q499Q	.	.	.
AACS	65985	broad.mit.edu	36	12	124187262	124187262	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023928	exon17	c.G1780A	p.A594T	.	.	.
TMEM132D	121256	broad.mit.edu	36	12	128750800	128750800	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133448	exon2	c.G476A	p.R159H	.	.	.
PGAM5	192111	broad.mit.edu	36	12	131801612	131801612	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001170544	exon2	c.C287A	p.A96D	.	.	.
STRAP	11171	broad.mit.edu	36	12	15934841	15934841	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007178	exon4	c.G374A	p.R125H	.	.	.
ABCC9	10060	broad.mit.edu	36	12	21886528	21886528	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020297	exon27	c.C3460T	p.R1154W	.	.	.
KRAS	3845	broad.mit.edu	36	12	25269829	25269829	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004985	exon4	c.G436A	p.A146T	KRAS,large_intestine,NS,Substitution - Missense,0	.	.
TULP3	7289	broad.mit.edu	36	12	2910529	2910529	+	De_novo_Start_InFrame	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001160408	exon6	c.C558T	p.D186D	.	.	.
DDX11	1663	broad.mit.edu	36	12	31134273	31134273	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004399	exon9	c.G1067A	p.R356H	.	.	.
PKP2	5318	broad.mit.edu	36	12	32895023	32895023	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004572	exon5	c.G1322A	p.R441Q	.	.	.
PRMT8	56341	broad.mit.edu	36	12	3562572	3562572	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019854	exon8	c.G916A	p.A306T	.	.	.
LRRK2	120892	broad.mit.edu	36	12	38994152	38994152	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198578	exon32	c.C4648T	p.R1550W	LRRK2,ovary,NS,Substitution - Missense,-1	.	.
FAM113B	91523	broad.mit.edu	36	12	45916039	45916039	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138371	exon2	c.G926A	p.R309H	.	.	.
OR8S1	341568	broad.mit.edu	36	12	47208060	47208060	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005203	exon2	c.C987T	p.P329P	.	.	.
FKBP11	51303	broad.mit.edu	36	12	47602125	47602125	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016594	exon6	c.T515A	p.I172N	.	.	.
PRPH	5630	broad.mit.edu	36	12	47976284	47976284	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006262	exon2	c.G602A	p.R201H	.	.	.
PRPF40B	25766	broad.mit.edu	36	12	48315231	48315231	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031698	exon12	c.C1018T	p.R340W	.	.	.
FMNL3	91010	broad.mit.edu	36	12	48330841	48330841	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175736	exon17	c.G1885A	p.A629T	.	.	.
KRT74	121391	broad.mit.edu	36	12	51252715	51252715	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175053	exon2	c.C475T	p.R159C	.	.	.
CBX5	23468	broad.mit.edu	36	12	52937617	52937617	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127322	exon2	c.C85T	p.R29C	.	.	.
OR10P1	121130	broad.mit.edu	36	12	54317834	54317834	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206899	exon1	c.G892A	p.V298M	.	.	.
ERBB3	2065	broad.mit.edu	36	12	54765121	54765121	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005915	exon3	c.G310A	p.V104M	ERBB3,ovary,NS,Substitution - Missense,0	.	.
INHBE	83729	broad.mit.edu	36	12	56136855	56136855	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031479	exon2	c.C1010T	p.T337M	.	.	.
ARHGAP9	64333	broad.mit.edu	36	12	56155959	56155959	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080156	exon8	c.A683C	p.E228A	.	.	.
ARHGEF25	115557	broad.mit.edu	36	12	56296066	56296066	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001111270	exon14	c.C1536T	p.N512N	.	.	.
B4GALNT1	2583	broad.mit.edu	36	12	56309194	56309194	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001478	exon7	c.C715T	p.R239W	.	.	.
AGAP2	116986	broad.mit.edu	36	12	56407462	56407462	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014770	exon16	c.G1960A	p.V654M	.	.	.
CDK4	1019	broad.mit.edu	36	12	56429288	56429288	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000075	exon7	c.C763T	p.R255C	.	.	.
VWF	7450	broad.mit.edu	36	12	5973334	5973334	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000552	exon37	c.C6553T	p.R2185W	.	.	.
MON2	23041	broad.mit.edu	36	12	61174025	61174025	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015026	exon3	c.C239T	p.P80L	.	.	.
GNS	2799	broad.mit.edu	36	12	63401702	63401702	+	Silent	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002076	exon12	c.C1359A	p.A453A	.	.	.
CHD4	1108	broad.mit.edu	36	12	6566874	6566874	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001273	exon25	c.C3816T	p.G1272G	.	.	.
MLF2	8079	broad.mit.edu	36	12	6728331	6728331	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005439	exon8	c.G638A	p.R213Q	.	.	.
ZFC3H1	196441	broad.mit.edu	36	12	70294745	70294745	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144982	exon30	c.A5363G	p.Y1788C	.	.	.
C1S	716	broad.mit.edu	36	12	7044654	7044654	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201442	exon9	c.G1038T	p.K346N	.	.	.
CD163L1	283316	broad.mit.edu	36	12	7418575	7418575	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_174941	exon13	c.G3139T	p.G1047W	.	.	.
NAV3	89795	broad.mit.edu	36	12	77034689	77034689	+	Silent	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014903	exon13	c.T2643C	p.D881D	.	.	.
SLC2A14	144195	broad.mit.edu	36	12	7861711	7861711	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153449	exon11	c.C1327T	p.L443F	.	.	.
MYF5	4617	broad.mit.edu	36	12	79635251	79635251	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005593	exon1	c.G278A	p.R93Q	.	.	.
FOXJ2	55810	broad.mit.edu	36	12	8092017	8092017	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018416	exon7	c.G1090A	p.A364T	.	.	.
C3AR1	719	broad.mit.edu	36	12	8103071	8103071	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004054	exon2	c.C978T	p.D326D	.	.	.
NTN4	59277	broad.mit.edu	36	12	94583839	94583839	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021229	exon9	c.A1628G	p.E543G	.	.	.
HAL	3034	broad.mit.edu	36	12	94895869	94895869	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002108	exon18	c.C1638T	p.I546I	.	.	.
TAS2R50	259296	broad.mit.edu	36	12	11030699	11030699	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_176890	exon1	c.28delT	p.S10fs	.	.	.
LHX5	64211	broad.mit.edu	36	12	112385528	112385528	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022363	exon5	c.1059delC	p.P353fs	.	.	.
MLL2	8085	broad.mit.edu	36	12	47720759	47720759	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003482	exon31	c.7061delC	p.P2354fs	.	.	.
GABRB3	2562	broad.mit.edu	36	15	24363883	24363883	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021912	exon7	c.C773T	p.T258M	.	.	.
MTMR10	54893	broad.mit.edu	36	15	29021065	29021065	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017762	exon16	c.G2234A	p.G745E	.	.	.
TRPM1	4308	broad.mit.edu	36	15	29117540	29117540	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002420	exon18	c.C2372T	p.T791M	.	.	.
RYR3	6263	broad.mit.edu	36	15	31723895	31723895	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001036	exon28	c.C3648T	p.C1216C	.	.	.
PGBD4	161779	broad.mit.edu	36	15	32182044	32182044	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152595	exon1	c.G20A	p.R7H	.	.	.
BAHD1	22893	broad.mit.edu	36	15	38538632	38538632	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014952	exon2	c.C677A	p.P226H	.	.	.
DLL4	54567	broad.mit.edu	36	15	39016347	39016347	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019074	exon9	c.C1870T	p.R624W	.	.	.
SPTBN5	51332	broad.mit.edu	36	15	39934370	39934370	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016642	exon56	c.C9415T	p.R3139W	.	.	.
CAPN3	825	broad.mit.edu	36	15	40476329	40476329	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_212465	exon13	c.C894T	p.A298A	.	.	.
ELL3	80237	broad.mit.edu	36	15	41855573	41855573	+	De_novo_Start_OutOfFrame	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025165	exon3	c.G237T	p.E79D	.	.	.
DTWD1	56986	broad.mit.edu	36	15	47704810	47704810	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144955	exon2	c.C154T	p.Q52X	.	.	.
ATP8B4	79895	broad.mit.edu	36	15	48059184	48059184	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024837	exon12	c.C956T	p.S319F	.	.	.
HDC	3067	broad.mit.edu	36	15	48322493	48322493	+	Silent	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002112	exon12	c.T1245C	p.G415G	.	.	.
DMXL2	23312	broad.mit.edu	36	15	49582303	49582303	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015263	exon17	c.C2984A	p.P995H	.	.	.
UNC13C	440279	broad.mit.edu	36	15	52093730	52093730	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080534	exon1	c.G1338A	p.W446X	.	.	.
TCF12	6938	broad.mit.edu	36	15	55352611	55352611	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207037	exon19	c.C1837T	p.R613C	.	.	.
GCOM1	145781	broad.mit.edu	36	15	55701129	55701129	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152451	exon4	c.G350A	p.R117Q	.	.	.
GCNT3	9245	broad.mit.edu	36	15	57698237	57698237	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004751	exon3	c.G508T	p.E170X	.	.	.
VPS13C	54832	broad.mit.edu	36	15	59942967	59942967	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017684	exon80	c.C10787A	p.P3596H	.	.	.
SNX1	6642	broad.mit.edu	36	15	62197371	62197371	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003099	exon3	c.G274A	p.A92T	.	.	.
SPG21	51324	broad.mit.edu	36	15	63048670	63048670	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127889	exon7	c.G644A	p.R215Q	.	.	.
DPP8	54878	broad.mit.edu	36	15	63558298	63558298	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017743	exon11	c.C1429T	p.R477X	.	.	.
C15orf44	81556	broad.mit.edu	36	15	63686694	63686694	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030800	exon2	c.G78A	p.Q26Q	.	.	.
KIF23	9493	broad.mit.edu	36	15	67505744	67505744	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004856	exon9	c.G863A	p.R288H	.	.	.
THSD4	79875	broad.mit.edu	36	15	69856705	69856705	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024817	exon17	c.G2995A	p.A999T	.	.	.
NR2E3	10002	broad.mit.edu	36	15	69891363	69891363	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014249	exon4	c.C364T	p.R122C	.	.	.
HCN4	10021	broad.mit.edu	36	15	71409109	71409109	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005477	exon4	c.G1448A	p.R483Q	.	.	.
ISLR2	57611	broad.mit.edu	36	15	72214189	72214189	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020851	exon3	c.G2041A	p.A681T	.	.	.
CYP1A1	1543	broad.mit.edu	36	15	72801753	72801753	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000499	exon2	c.T739C	p.S247P	.	.	.
SIN3A	25942	broad.mit.edu	36	15	73489272	73489272	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145358	exon8	c.C1275T	p.C425C	.	.	.
FAH	2184	broad.mit.edu	36	15	78260460	78260460	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000137	exon13	c.A1084G	p.M362V	.	.	.
BTBD1	53339	broad.mit.edu	36	15	81501514	81501514	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025238	exon4	c.C832T	p.P278S	.	.	.
AGBL1	123624	broad.mit.edu	36	15	84741649	84741649	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152336	exon17	c.G2285A	p.S762N	.	.	.
RLBP1	6017	broad.mit.edu	36	15	87561486	87561486	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000326	exon5	c.C215T	p.A72V	.	.	.
RHCG	51458	broad.mit.edu	36	15	87822162	87822162	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016321	exon6	c.C885T	p.T295T	.	.	.
ZNF710	374655	broad.mit.edu	36	15	88412714	88412714	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198526	exon2	c.C1341T	p.R447R	.	.	.
IGF1R	3480	broad.mit.edu	36	15	97277493	97277493	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000875	exon10	c.C2066T	p.T689I	.	.	.
LRRC28	123355	broad.mit.edu	36	15	97645635	97645635	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144598	exon5	c.G341A	p.R114H	.	.	.
LRRK1	79705	broad.mit.edu	36	15	99414741	99414741	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024652	exon28	c.C4490T	p.A1497V	.	.	.
B2M	567	broad.mit.edu	36	15	42791073	42791074	+	Frame_Shift_Del	DEL	CT	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004048	exon1	c.37_38del	p.13_13del	.	.	.
B2M	567	broad.mit.edu	36	15	42795045	42795045	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004048	exon2	c.200delA	p.E67fs	.	.	.
DUOX1	53905	broad.mit.edu	36	15	43220792	43220794	+	In_Frame_Del	DEL	AAG	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017434	exon15	c.1576_1578del	p.526_526del	.	.	.
NGRN	51335	broad.mit.edu	36	15	88610022	88610022	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001033088	exon1	c.74delG	p.R25fs	.	.	.
MTTP	4547	broad.mit.edu	36	4	100731451	100731451	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000253	exon6	c.G538A	p.A180T	.	.	.
MANBA	4126	broad.mit.edu	36	4	103863095	103863095	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005908	exon4	c.C528T	p.C176C	.	.	.
ANK2	287	broad.mit.edu	36	4	114494636	114494636	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001148	exon38	c.C5413T	p.P1805S	.	.	.
ANKRD50	57182	broad.mit.edu	36	4	125810361	125810361	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001167882	exon3	c.G2984A	p.R995Q	.	.	.
SLC25A31	83447	broad.mit.edu	36	4	128871198	128871198	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031291	exon1	c.C48T	p.D16D	.	.	.
MFSD8	256471	broad.mit.edu	36	4	129061308	129061308	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152778	exon13	c.C1484T	p.T495I	.	.	.
UCP1	7350	broad.mit.edu	36	4	141702973	141702973	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021833	exon5	c.C633T	p.D211D	.	.	.
TBC1D9	23158	broad.mit.edu	36	4	141763284	141763284	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015130	exon21	c.G3316A	p.V1106M	.	.	.
OTUD4	54726	broad.mit.edu	36	4	146312312	146312312	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001102653	exon3	c.G59C	p.G20A	.	.	.
CC2D2A	57545	broad.mit.edu	36	4	15126657	15126657	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080522	exon11	c.G949A	p.G317R	.	.	.
FBXW7	55294	broad.mit.edu	36	4	153468835	153468835	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018315	exon8	c.C1153T	p.R385C	FBXW7,large_intestine,NS,Substitution - Missense,+1	.	.
LRAT	9227	broad.mit.edu	36	4	155889672	155889672	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004744	exon3	c.G627A	p.T209T	.	.	.
TKTL2	84076	broad.mit.edu	36	4	164612592	164612592	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032136	exon1	c.G1745T	p.R582M	.	.	.
CBR4	84869	broad.mit.edu	36	4	170164528	170164528	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032783	exon3	c.C353T	p.A118V	.	.	.
GALNTL6	442117	broad.mit.edu	36	4	173971367	173971367	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001034845	exon7	c.G841T	p.G281X	.	.	.
CCDC110	256309	broad.mit.edu	36	4	186619299	186619299	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152775	exon5	c.G246A	p.S82S	.	.	.
TRIML2	205860	broad.mit.edu	36	4	189257183	189257183	+	De_novo_Start_OutOfFrame	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173553	exon4	c.G471T	p.K157N	.	.	.
WHSC2	7469	broad.mit.edu	36	4	1957879	1957879	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005663	exon5	c.C716T	p.A239V	.	.	.
GPR125	166647	broad.mit.edu	36	4	22053494	22053494	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145290	exon7	c.C797T	p.A266V	.	.	.
SH3BP2	6452	broad.mit.edu	36	4	2796219	2796219	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145856	exon4	c.G492A	p.T164T	.	.	.
KLHL5	51088	broad.mit.edu	36	4	38774888	38774888	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015990	exon6	c.C1433T	p.T478I	.	.	.
PHOX2B	8929	broad.mit.edu	36	4	41444281	41444281	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003924	exon2	c.G271A	p.G91S	.	.	.
FIP1L1	81608	broad.mit.edu	36	4	54003597	54003597	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030917	exon14	c.G1195A	p.A399T	.	.	.
KDR	3791	broad.mit.edu	36	4	55659679	55659679	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002253	exon16	c.C2315T	p.A772V	.	.	.
EPHA5	2044	broad.mit.edu	36	4	66043705	66043705	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004439	exon4	c.C1062T	p.C354C	.	.	.
ZNF595	152687	broad.mit.edu	36	4	77034	77034	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182524	exon4	c.G1639A	p.G547S	.	.	.
GK2	2712	broad.mit.edu	36	4	80548173	80548173	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033214	exon1	c.C206T	p.A69V	.	.	.
ANTXR2	118429	broad.mit.edu	36	4	81211775	81211775	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145794	exon2	c.G210A	p.A70A	.	.	.
FGF5	2250	broad.mit.edu	36	4	81407267	81407267	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033143	exon1	c.G265A	p.G89S	.	.	.
ACOX3	8310	broad.mit.edu	36	4	8468529	8468529	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003501	exon3	c.G242A	p.R81Q	.	.	.
CPZ	8532	broad.mit.edu	36	4	8659481	8659481	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003652	exon5	c.C991T	p.R331C	.	.	.
AFF1	4299	broad.mit.edu	36	4	88255436	88255436	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166693	exon12	c.G2427T	p.R809S	.	.	.
HERC6	55008	broad.mit.edu	36	4	89553259	89553259	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017912	exon12	c.C1375T	p.R459C	.	.	.
DRD5	1816	broad.mit.edu	36	4	9393244	9393244	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000798	exon1	c.T493C	p.W165R	.	.	.
CRMP1	1400	broad.mit.edu	36	4	5874422	5874422	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001313	exon14	c.1685delC	p.P562fs	.	.	.
NXF5	55998	broad.mit.edu	36	X	100983170	100983170	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032946	exon6	c.G257A	p.S86N	.	.	.
CLCN4	1183	broad.mit.edu	36	X	10148908	10148908	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001830	exon12	c.C2183T	p.T728M	.	.	.
TEX13A	56157	broad.mit.edu	36	X	104351374	104351374	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031274	exon2	c.C364T	p.R122C	.	.	.
CHRDL1	91851	broad.mit.edu	36	X	109851303	109851303	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143981	exon5	c.G413A	p.R138Q	.	.	.
FRMPD4	9758	broad.mit.edu	36	X	12644356	12644356	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014728	exon15	c.G1857T	p.E619D	.	.	.
SAGE1	55511	broad.mit.edu	36	X	134817646	134817646	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018666	exon10	c.C1139T	p.A380V	.	.	.
MAP7D3	79649	broad.mit.edu	36	X	135141997	135141997	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001173517	exon7	c.G680A	p.R227H	.	.	.
GLRA2	2742	broad.mit.edu	36	X	14535183	14535183	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001118885	exon7	c.C587T	p.T196M	.	.	.
FANCB	2187	broad.mit.edu	36	X	14792671	14792671	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018113	exon3	c.G883T	p.G295X	.	.	.
MAMLD1	10046	broad.mit.edu	36	X	149389430	149389430	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177466	exon2	c.G852A	p.A284A	.	.	.
MAGEA12	4111	broad.mit.edu	36	X	151650671	151650671	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005367	exon2	c.C786T	p.P262P	.	.	.
BGN	633	broad.mit.edu	36	X	152424540	152424540	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001711	exon4	c.T377A	p.I126N	.	.	.
NHS	4810	broad.mit.edu	36	X	17654937	17654937	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001136024	exon7	c.G2259A	p.S753S	.	.	.
ZNF645	158506	broad.mit.edu	36	X	22201878	22201878	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152577	exon1	c.G849A	p.A283A	.	.	.
MXRA5	25878	broad.mit.edu	36	X	3245154	3245154	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015419	exon6	c.G6568A	p.A2190T	.	.	.
MXRA5	25878	broad.mit.edu	36	X	3245540	3245540	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015419	exon6	c.C6182T	p.P2061L	.	.	.
MXRA5	25878	broad.mit.edu	36	X	3251421	3251421	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015419	exon5	c.C2305T	p.R769X	.	.	.
KCND1	3750	broad.mit.edu	36	X	48711417	48711417	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004979	exon1	c.C206T	p.S69L	.	.	.
PRICKLE3	4007	broad.mit.edu	36	X	48919280	48919280	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006150	exon9	c.C1534T	p.R512C	.	.	.
DGKK	139189	broad.mit.edu	36	X	50160856	50160856	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013742	exon8	c.C1330T	p.R444W	.	.	.
IQSEC2	23096	broad.mit.edu	36	X	53300630	53300630	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001111125	exon4	c.C1208A	p.P403H	.	.	.
ZXDB	158586	broad.mit.edu	36	X	57636331	57636331	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007157	exon1	c.G1125A	p.T375T	.	.	.
MSN	4478	broad.mit.edu	36	X	64866277	64866277	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002444	exon4	c.G445A	p.G149R	.	.	.
KIAA2022	340533	broad.mit.edu	36	X	73876796	73876796	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008537	exon3	c.G4321A	p.G1441R	.	.	.
AMOT	154796	broad.mit.edu	36	X	111952295	111952295	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001113490	exon1	c.716delC	p.P239fs	.	.	.
GABRQ	55879	broad.mit.edu	36	X	151571718	151571718	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018558	exon9	c.1217delC	p.A406fs	.	.	.
CASK	8573	broad.mit.edu	36	X	41313928	41313928	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126054	exon16	c.1519delA	p.M507X	.	.	.
FAM123B	139285	broad.mit.edu	36	X	63329373	63329373	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152424	exon2	c.519delT	p.F173fs	.	.	.
ODC1	4953	broad.mit.edu	36	2	10499711	10499711	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002539	exon9	c.C791T	p.P264L	.	.	.
TGFBRAP1	9392	broad.mit.edu	36	2	105263609	105263609	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004257	exon6	c.C1125T	p.S375S	.	.	.
EDAR	10913	broad.mit.edu	36	2	108895613	108895613	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022336	exon6	c.G482A	p.G161D	.	.	.
SH3RF3	344558	broad.mit.edu	36	2	109432088	109432088	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099289	exon8	c.G1859A	p.R620Q	.	.	.
BUB1	699	broad.mit.edu	36	2	111123305	111123305	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004336	exon19	c.G2325A	p.K775K	.	.	.
FBLN7	129804	broad.mit.edu	36	2	112661397	112661397	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153214	exon8	c.G1163A	p.R388H	.	.	.
WDR33	55339	broad.mit.edu	36	2	128237160	128237160	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018383	exon7	c.G670A	p.G224S	.	.	.
UGGT1	56886	broad.mit.edu	36	2	128619892	128619892	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020120	exon18	c.G1897A	p.V633I	.	.	.
GPR39	2863	broad.mit.edu	36	2	132891770	132891770	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001508	exon1	c.G685A	p.V229M	.	.	.
ZRANB3	84083	broad.mit.edu	36	2	135701988	135701988	+	Silent	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032143	exon14	c.C2022A	p.T674T	.	.	.
LCT	3938	broad.mit.edu	36	2	136291755	136291755	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002299	exon6	c.G1333A	p.G445S	.	.	.
THSD7B	80731	broad.mit.edu	36	2	138129696	138129696	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080427	exon21	c.C4013T	p.A1338V	.	.	.
MBD5	55777	broad.mit.edu	36	2	148964528	148964528	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018328	exon12	c.C4158T	p.G1386G	.	.	.
CACNB4	785	broad.mit.edu	36	2	152435331	152435331	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145798	exon8	c.G659A	p.R220H	.	.	.
PXDN	7837	broad.mit.edu	36	2	1646500	1646500	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012293	exon12	c.C1451T	p.S484L	.	.	.
SCN2A	6326	broad.mit.edu	36	2	165860622	165860622	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040143	exon1	c.C43T	p.R15C	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167814870	167814870	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199144	exon7	c.C8056T	p.Q2686X	.	.	.
SPC25	57405	broad.mit.edu	36	2	169454264	169454264	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020675	exon2	c.C12T	p.D4D	.	.	.
UBR3	130507	broad.mit.edu	36	2	170645394	170645394	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172070	exon38	c.G5503T	p.G1835C	.	.	.
AGPS	8540	broad.mit.edu	36	2	178066160	178066160	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003659	exon12	c.G1272A	p.K424K	.	.	.
TTC30B	150737	broad.mit.edu	36	2	178124567	178124567	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152517	exon1	c.C1171T	p.R391W	.	.	.
RBM45	129831	broad.mit.edu	36	2	178685641	178685641	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152945	exon1	c.T122G	p.L41R	.	.	.
NEUROD1	4760	broad.mit.edu	36	2	182251180	182251180	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002500	exon2	c.C653A	p.P218H	.	.	.
FRZB	2487	broad.mit.edu	36	2	183415513	183415513	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001463	exon3	c.G530A	p.R177H	.	.	.
MYT1L	23040	broad.mit.edu	36	2	1893034	1893034	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015025	exon13	c.C1796T	p.S599L	.	.	.
COL5A2	1290	broad.mit.edu	36	2	189631492	189631492	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000393	exon33	c.C2137T	p.R713X	.	.	.
MYO1B	4430	broad.mit.edu	36	2	191923157	191923157	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012223	exon7	c.G523T	p.D175Y	.	.	.
DNAH7	56171	broad.mit.edu	36	2	196437623	196437623	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018897	exon41	c.G7001A	p.R2334H	.	.	.
WDR35	57539	broad.mit.edu	36	2	20032808	20032808	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001006657	exon9	c.G922A	p.A308T	.	.	.
APOB	338	broad.mit.edu	36	2	21109738	21109738	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000384	exon9	c.G1062T	p.E354D	.	.	.
ERBB4	2066	broad.mit.edu	36	2	212697789	212697789	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005235	exon2	c.G167A	p.C56Y	.	.	.
SPAG16	79582	broad.mit.edu	36	2	213883083	213883083	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001025436	exon4	c.T335G	p.F112C	.	.	.
XRCC5	7520	broad.mit.edu	36	2	216734954	216734954	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021141	exon16	c.G1772A	p.S591N	.	.	.
MARCH4	57574	broad.mit.edu	36	2	216942797	216942797	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020814	exon1	c.C432T	p.T144T	.	.	.
GPBAR1	151306	broad.mit.edu	36	2	218835699	218835699	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001077191	exon2	c.C7T	p.P3S	.	.	.
ATG9A	79065	broad.mit.edu	36	2	219796709	219796709	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024085	exon9	c.C1441A	p.L481M	.	.	.
PAX3	5077	broad.mit.edu	36	2	222870060	222870060	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000438	exon2	c.C202T	p.R68W	.	.	.
IRS1	3667	broad.mit.edu	36	2	227370999	227370999	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005544	exon1	c.G700A	p.G234R	.	.	.
MFF	56947	broad.mit.edu	36	2	227905491	227905491	+	Silent	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020194	exon5	c.A372G	p.E124E	.	.	.
DNER	92737	broad.mit.edu	36	2	229980235	229980235	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139072	exon10	c.C1680T	p.S560S	.	.	.
NCL	4691	broad.mit.edu	36	2	232028986	232028986	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005381	exon12	c.G1811A	p.R604Q	.	.	.
EFHD1	80303	broad.mit.edu	36	2	233245347	233245347	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025202	exon3	c.G535A	p.D179N	.	.	.
GIGYF2	26058	broad.mit.edu	36	2	233406023	233406023	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001103148	exon21	c.G2724A	p.Q908Q	.	.	.
INPP5D	3635	broad.mit.edu	36	2	233736485	233736485	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005541	exon7	c.C826T	p.R276C	.	.	.
C2orf44	80304	broad.mit.edu	36	2	24114877	24114877	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025203	exon2	c.C992T	p.T331M	.	.	.
ADCY3	109	broad.mit.edu	36	2	24994869	24994869	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004036	exon1	c.G492A	p.A164A	.	.	.
DNMT3A	1788	broad.mit.edu	36	2	25351327	25351327	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175629	exon6	c.G626A	p.R209H	.	.	.
CAD	790	broad.mit.edu	36	2	27298611	27298611	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004341	exon4	c.C398A	p.S133Y	.	.	.
CAPN13	92291	broad.mit.edu	36	2	30812889	30812889	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144575	exon18	c.G1706A	p.R569H	.	.	.
EHD3	30845	broad.mit.edu	36	2	31342964	31342964	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014600	exon6	c.G1498A	p.E500K	.	.	.
CDC42EP3	10602	broad.mit.edu	36	2	37726722	37726722	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006449	exon2	c.G513A	p.S171S	.	.	.
NRXN1	9378	broad.mit.edu	36	2	50578288	50578288	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135659	exon15	c.C2686T	p.R896W	.	.	.
PSME4	23198	broad.mit.edu	36	2	54012520	54012520	+	Silent	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014614	exon10	c.T1272C	p.L424L	.	.	.
PAPOLG	64895	broad.mit.edu	36	2	60840885	60840885	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022894	exon2	c.G130A	p.A44T	.	.	.
AFTPH	54812	broad.mit.edu	36	2	64672631	64672631	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017657	exon9	c.G2688A	p.T896T	.	.	.
SERTAD2	9792	broad.mit.edu	36	2	64716812	64716812	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014755	exon2	c.C698T	p.T233M	.	.	.
SLC1A4	6509	broad.mit.edu	36	2	65097276	65097276	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003038	exon5	c.C999T	p.L333L	.	.	.
ANTXR1	84168	broad.mit.edu	36	2	69153675	69153675	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_053034	exon6	c.G430A	p.V144I	.	.	.
SNRNP27	11017	broad.mit.edu	36	2	69975833	69975833	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006857	exon2	c.G138A	p.P46P	.	.	.
ADD2	119	broad.mit.edu	36	2	70776967	70776967	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001185054	exon5	c.G392A	p.R131Q	.	.	.
CLEC4F	165530	broad.mit.edu	36	2	70889927	70889927	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173535	exon7	c.G1754T	p.W585L	.	.	.
TET3	200424	broad.mit.edu	36	2	74182451	74182451	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144993	exon9	c.G4623A	p.T1541T	.	.	.
CTNNA2	1496	broad.mit.edu	36	2	80654908	80654908	+	Silent	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004389	exon13	c.T1854C	p.Y618Y	.	.	.
GGCX	2677	broad.mit.edu	36	2	85633945	85633945	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000821	exon8	c.G1076A	p.R359H	.	.	.
POLR1A	25885	broad.mit.edu	36	2	86155723	86155723	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015425	exon12	c.G1552A	p.V518M	.	.	.
IMMT	10989	broad.mit.edu	36	2	86242705	86242705	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001100169	exon8	c.C798T	p.G266G	.	.	.
SNRNP200	23020	broad.mit.edu	36	2	96316293	96316293	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014014	exon28	c.G3689T	p.S1230I	.	.	.
ACTR1B	10120	broad.mit.edu	36	2	97641863	97641863	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005735	exon5	c.G351A	p.P117P	.	.	.
DNER	92737	broad.mit.edu	36	2	230164674	230164674	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139072	exon2	c.451delC	p.R151fs	.	.	.
COLEC11	78989	broad.mit.edu	36	2	3669287	3669287	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199235	exon8	c.511delG	p.G171fs	.	.	.
SMEK2	57223	broad.mit.edu	36	2	55679190	55679190	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001122964	exon4	c.787delA	p.I263fs	.	.	.
CLEC4F	165530	broad.mit.edu	36	2	70896867	70896867	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173535	exon4	c.1154delA	p.N385fs	.	.	.
DYSF	8291	broad.mit.edu	36	2	71651259	71651259	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130982	exon30	c.3150delC	p.I1050fs	.	.	.
RNF103	7844	broad.mit.edu	36	2	86703323	86703325	+	In_Frame_Del	DEL	CTT	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198952	exon1	c.196_198del	p.66_66del	.	.	.
GABBR2	9568	broad.mit.edu	36	9	100256085	100256085	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005458	exon7	c.C1235T	p.T412M	.	.	.
GABBR2	9568	broad.mit.edu	36	9	100344127	100344127	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005458	exon3	c.C479T	p.T160M	.	.	.
ANKS6	203286	broad.mit.edu	36	9	100592463	100592463	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173551	exon2	c.G606A	p.G202G	.	.	.
TGFBR1	7046	broad.mit.edu	36	9	100934770	100934770	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004612	exon3	c.C502T	p.R168C	.	.	.
TEX10	54881	broad.mit.edu	36	9	102142406	102142406	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017746	exon5	c.G1204A	p.V402I	.	.	.
MURC	347273	broad.mit.edu	36	9	102380302	102380302	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018116	exon1	c.C56T	p.S19L	.	.	.
GRIN3A	116443	broad.mit.edu	36	9	103415592	103415592	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133445	exon6	c.G2653A	p.A885T	.	.	.
OR13C3	138803	broad.mit.edu	36	9	106338373	106338373	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001961	exon1	c.C543T	p.S181S	.	.	.
ABCA1	19	broad.mit.edu	36	9	106621742	106621742	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005502	exon22	c.G3187A	p.V1063M	.	.	.
SVEP1	79987	broad.mit.edu	36	9	112291819	112291819	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153366	exon9	c.C1862T	p.A621V	.	.	.
MUSK	4593	broad.mit.edu	36	9	112536390	112536390	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166280	exon7	c.G697A	p.V233I	.	.	.
ALAD	210	broad.mit.edu	36	9	115191874	115191874	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000031	exon8	c.G626A	p.R209Q	.	.	.
PAPPA	5069	broad.mit.edu	36	9	118029640	118029640	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002581	exon6	c.C2221T	p.R741C	.	.	.
ASTN2	23245	broad.mit.edu	36	9	118453649	118453649	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198186	exon2	c.C354T	p.I118I	.	.	.
OR5C1	392391	broad.mit.edu	36	9	124591737	124591737	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001923	exon1	c.C705T	p.V235V	.	.	.
DENND1A	57706	broad.mit.edu	36	9	125183610	125183610	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020946	exon22	c.C2952T	p.D984D	.	.	.
OLFML2A	169611	broad.mit.edu	36	9	126589192	126589192	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182487	exon2	c.C208T	p.R70C	.	.	.
SLC2A8	29988	broad.mit.edu	36	9	129207027	129207027	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014580	exon8	c.G1086T	p.Q362H	.	.	.
STXBP1	6812	broad.mit.edu	36	9	129467424	129467424	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003165	exon8	c.T656C	p.M219T	.	.	.
NAIF1	203245	broad.mit.edu	36	9	129865739	129865739	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_197956	exon2	c.G773A	p.R258H	.	.	.
TRUB2	26995	broad.mit.edu	36	9	130123807	130123807	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015679	exon2	c.G133A	p.A45T	.	.	.
LRRC8A	56262	broad.mit.edu	36	9	130718308	130718308	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019594	exon4	c.C2270T	p.T757M	.	.	.
DOLK	22845	broad.mit.edu	36	9	130747977	130747977	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014908	exon1	c.C1427T	p.T476I	.	.	.
BAT2L1	84726	broad.mit.edu	36	9	133348012	133348012	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013318	exon21	c.C5270T	p.A1757V	.	.	.
VAV2	7410	broad.mit.edu	36	9	135632353	135632353	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134398	exon23	c.G1944T	p.K648N	.	.	.
OBP2A	29991	broad.mit.edu	36	9	137578462	137578462	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014582	exon2	c.C90T	p.Y30Y	.	.	.
TRAF2	7186	broad.mit.edu	36	9	138938183	138938183	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021138	exon10	c.C1197T	p.D399D	.	.	.
FBXW5	54461	broad.mit.edu	36	9	138957163	138957163	+	Silent	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018998	exon4	c.C405A	p.P135P	.	.	.
NFIB	4781	broad.mit.edu	36	9	14297164	14297164	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001190738	exon2	c.G464A	p.R155H	.	.	.
KCNV2	169522	broad.mit.edu	36	9	2708017	2708017	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133497	exon1	c.C278T	p.P93L	.	.	.
TLN1	7094	broad.mit.edu	36	9	35696487	35696487	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006289	exon39	c.C5150T	p.A1717V	.	.	.
TMEM8B	51754	broad.mit.edu	36	9	35837067	35837067	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016446	exon11	c.G894A	p.T298T	.	.	.
FBXO10	26267	broad.mit.edu	36	9	37527831	37527831	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012166	exon3	c.A695G	p.H232R	.	.	.
FRMPD1	22844	broad.mit.edu	36	9	37730286	37730286	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014907	exon15	c.C1761T	p.S587S	.	.	.
GLIS3	169792	broad.mit.edu	36	9	3819457	3819457	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152629	exon9	c.C2044T	p.H682Y	.	.	.
ALDH1B1	219	broad.mit.edu	36	9	38386925	38386925	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000692	exon2	c.C1180T	p.R394C	.	.	.
SLC1A1	6505	broad.mit.edu	36	9	4551493	4551493	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004170	exon3	c.C277T	p.R93C	.	.	.
SLC1A1	6505	broad.mit.edu	36	9	4573132	4573132	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004170	exon11	c.G1288A	p.A430T	.	.	.
RLN2	6019	broad.mit.edu	36	9	5294494	5294494	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_134441	exon1	c.G87C	p.E29D	.	.	.
PRKACG	5568	broad.mit.edu	36	9	70818726	70818726	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002732	exon1	c.G103A	p.A35T	.	.	.
FAM189A2	9413	broad.mit.edu	36	9	71193151	71193151	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004816	exon10	c.G1114A	p.E372K	.	.	.
TRPM6	140803	broad.mit.edu	36	9	76567350	76567350	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177310	exon26	c.C4042T	p.R1348X	.	.	.
TRPM6	140803	broad.mit.edu	36	9	76587525	76587525	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177310	exon22	c.G2969A	p.R990H	.	.	.
TRPM6	140803	broad.mit.edu	36	9	76638771	76638771	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177310	exon6	c.G617A	p.G206D	.	.	.
PCSK5	5125	broad.mit.edu	36	9	77979794	77979794	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001190482	exon14	c.C1829T	p.P610L	.	.	.
PRUNE2	158471	broad.mit.edu	36	9	78460193	78460193	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015225	exon10	c.C8322T	p.G2774G	.	.	.
OMD	4958	broad.mit.edu	36	9	94217379	94217379	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005014	exon3	c.G1142T	p.R381M	.	.	.
NCBP1	4686	broad.mit.edu	36	9	99450130	99450130	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002486	exon8	c.C701T	p.A234V	.	.	.
OR13F1	138805	broad.mit.edu	36	9	106307268	106307268	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004485	exon1	c.904delA	p.K302fs	.	.	.
PHF19	26147	broad.mit.edu	36	9	122671899	122671901	+	In_Frame_Del	DEL	GGA	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001009936	exon5	c.508_510del	p.170_170del	.	.	.
C9orf98	158067	broad.mit.edu	36	9	134743428	134743428	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152572	exon1	c.36delC	p.P12fs	.	.	.
KCNT1	57582	broad.mit.edu	36	9	137802640	137802642	+	In_Frame_Del	DEL	AGG	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020822	exon18	c.1886_1888del	p.629_630del	.	.	.
C9orf11	54586	broad.mit.edu	36	9	27287005	27287005	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001161585	exon1	c.49delA	p.S17fs	.	.	.
NALCN	259232	broad.mit.edu	36	13	100534094	100534094	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052867	exon31	c.C3552T	p.I1184I	.	.	.
ITGBL1	9358	broad.mit.edu	36	13	101164834	101164834	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004791	exon10	c.A1325T	p.Y442F	.	.	.
FAM155A	728215	broad.mit.edu	36	13	106661001	106661001	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080396	exon2	c.G1019T	p.R340M	.	.	.
ANKRD10	55608	broad.mit.edu	36	13	110365096	110365096	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017664	exon1	c.C187T	p.H63Y	.	.	.
PROZ	8858	broad.mit.edu	36	13	112874164	112874164	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003891	exon8	c.C947T	p.T316M	.	.	.
FAM123A	219287	broad.mit.edu	36	13	24642736	24642736	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152704	exon1	c.G1022A	p.R341Q	.	.	.
WASF3	10810	broad.mit.edu	36	13	26153349	26153349	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006646	exon8	c.C875T	p.S292L	.	.	.
PAN3	255967	broad.mit.edu	36	13	27728471	27728471	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175854	exon7	c.A1043G	p.K348R	.	.	.
USPL1	10208	broad.mit.edu	36	13	30130744	30130744	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005800	exon9	c.G2530A	p.A844T	.	.	.
DCLK1	9201	broad.mit.edu	36	13	35584075	35584075	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004734	exon3	c.C654T	p.T218T	.	.	.
SOHLH2	54937	broad.mit.edu	36	13	35646974	35646974	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017826	exon7	c.G674A	p.R225H	.	.	.
SPERT	220082	broad.mit.edu	36	13	45185515	45185515	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152719	exon3	c.G354A	p.P118P	.	.	.
ZC3H13	23091	broad.mit.edu	36	13	45457478	45457478	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015070	exon10	c.C1675T	p.R559X	.	.	.
SETDB2	83852	broad.mit.edu	36	13	48953136	48953136	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001160308	exon7	c.C1039T	p.R347X	.	.	.
PCDH20	64881	broad.mit.edu	36	13	60885547	60885547	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022843	exon2	c.C686T	p.A229V	.	.	.
PCDH9	5101	broad.mit.edu	36	13	66698907	66698907	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020403	exon2	c.C1667T	p.A556V	.	.	.
DIS3	22894	broad.mit.edu	36	13	72233612	72233612	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128226	exon19	c.T2470C	p.F824L	.	.	.
DZIP1	22873	broad.mit.edu	36	13	95037831	95037831	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014934	exon19	c.C2124T	p.S708S	.	.	.
RNF113B	140432	broad.mit.edu	36	13	97626977	97626977	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178861	exon1	c.C515T	p.A172V	.	.	.
COL4A2	1284	broad.mit.edu	36	13	109923482	109923482	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001846	exon29	c.2409delC	p.G803fs	.	.	.
UTP14C	9724	broad.mit.edu	36	13	51491174	51491174	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004127	exon2	c.169delA	p.K57fs	.	.	.
FAM178A	55719	broad.mit.edu	36	10	102666704	102666704	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018121	exon3	c.G572A	p.G191D	.	.	.
FAM178A	55719	broad.mit.edu	36	10	102673854	102673854	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018121	exon5	c.A1106T	p.H369L	.	.	.
SEMA4G	57715	broad.mit.edu	36	10	102729888	102729888	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017893	exon10	c.G1148A	p.R383H	.	.	.
PDZD7	79955	broad.mit.edu	36	10	102772082	102772082	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001195263	exon5	c.C593A	p.P198H	.	.	.
LDB1	8861	broad.mit.edu	36	10	103859231	103859231	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001113407	exon9	c.G756A	p.M252I	.	.	.
COL17A1	1308	broad.mit.edu	36	10	105784071	105784071	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000494	exon52	c.C3778T	p.R1260C	.	.	.
COL17A1	1308	broad.mit.edu	36	10	105789250	105789250	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000494	exon43	c.C2839A	p.L947I	.	.	.
C10orf79	80217	broad.mit.edu	36	10	105893238	105893238	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025145	exon32	c.T4094G	p.L1365W	.	.	.
ADRB1	153	broad.mit.edu	36	10	115794519	115794519	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000684	exon1	c.C638A	p.P213H	.	.	.
VWA2	340706	broad.mit.edu	36	10	116035700	116035700	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198496	exon11	c.G1010T	p.S337I	.	.	.
GFRA1	2674	broad.mit.edu	36	10	117815101	117815101	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145453	exon9	c.G1209A	p.S403S	.	.	.
FAM45A	404636	broad.mit.edu	36	10	120867140	120867140	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207009	exon4	c.G452A	p.R151Q	.	.	.
DHTKD1	55526	broad.mit.edu	36	10	12171137	12171137	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018706	exon5	c.G864A	p.S288S	.	.	.
BTBD16	118663	broad.mit.edu	36	10	124084431	124084431	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144587	exon14	c.T1210C	p.F404L	.	.	.
CPXM2	119587	broad.mit.edu	36	10	125591993	125591993	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198148	exon4	c.C515T	p.A172V	.	.	.
MKI67	4288	broad.mit.edu	36	10	129794377	129794377	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145966	exon12	c.C4637T	p.T1546M	.	.	.
MGMT	4255	broad.mit.edu	36	10	131224593	131224593	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002412	exon2	c.C180T	p.H60H	.	.	.
GLRX3	10539	broad.mit.edu	36	10	131849248	131849248	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199868	exon4	c.T475C	p.C159R	.	.	.
PPP2R2D	55844	broad.mit.edu	36	10	133607508	133607508	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018461	exon4	c.G426A	p.T142T	.	.	.
JAKMIP3	282973	broad.mit.edu	36	10	133781048	133781048	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105521	exon2	c.G613A	p.E205K	.	.	.
JAKMIP3	282973	broad.mit.edu	36	10	133796937	133796937	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105521	exon3	c.G765T	p.E255D	.	.	.
LRRC27	80313	broad.mit.edu	36	10	134001121	134001121	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143758	exon3	c.G273A	p.P91P	.	.	.
DCLRE1C	64421	broad.mit.edu	36	10	15004990	15004990	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001033855	exon12	c.G1057A	p.E353K	.	.	.
CUBN	8029	broad.mit.edu	36	10	17015168	17015168	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001081	exon40	c.C6048T	p.T2016T	.	.	.
TRDMT1	1787	broad.mit.edu	36	10	17231109	17231109	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004412	exon11	c.G1112A	p.R371H	.	.	.
NEBL	10529	broad.mit.edu	36	10	21164516	21164516	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006393	exon14	c.G1381T	p.G461X	.	.	.
PTCHD3	374308	broad.mit.edu	36	10	27743124	27743124	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001034842	exon1	c.C62T	p.P21L	.	.	.
SVIL	6840	broad.mit.edu	36	10	29822307	29822307	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003174	exon19	c.G2583A	p.T861T	.	.	.
KIAA1462	57608	broad.mit.edu	36	10	30358183	30358183	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020848	exon3	c.G900A	p.S300S	.	.	.
PFKP	5214	broad.mit.edu	36	10	3145602	3145602	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002627	exon13	c.C1263T	p.P421P	.	.	.
ZEB1	6935	broad.mit.edu	36	10	31855867	31855867	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001174093	exon8	c.C2984T	p.A995V	.	.	.
CCNY	219771	broad.mit.edu	36	10	35812407	35812407	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145012	exon2	c.C224T	p.T75M	.	.	.
ZNF33A	7581	broad.mit.edu	36	10	38345883	38345883	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006954	exon3	c.G88A	p.D30N	.	.	.
RASGEF1A	221002	broad.mit.edu	36	10	43015131	43015131	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145313	exon7	c.G848A	p.R283Q	.	.	.
RBP3	5949	broad.mit.edu	36	10	48005879	48005879	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002900	exon2	c.C3219T	p.H1073H	.	.	.
MAPK8	5599	broad.mit.edu	36	10	49279725	49279725	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002750	exon1	c.C16T	p.R6C	.	.	.
ARHGAP22	58504	broad.mit.edu	36	10	49329116	49329116	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021226	exon9	c.G1062A	p.P354P	.	.	.
ARID5B	84159	broad.mit.edu	36	10	63522167	63522167	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032199	exon10	c.A2939G	p.H980R	.	.	.
EGR2	1959	broad.mit.edu	36	10	64243434	64243434	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000399	exon2	c.C970T	p.R324C	.	.	.
CCAR1	55749	broad.mit.edu	36	10	70195685	70195685	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018237	exon17	c.G2141A	p.R714H	.	.	.
DDX50	79009	broad.mit.edu	36	10	70376234	70376234	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024045	exon15	c.C2056T	p.R686X	.	.	.
ADAMTS14	140766	broad.mit.edu	36	10	72187812	72187812	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080722	exon20	c.G3026T	p.R1009M	.	.	.
ADAMTS14	140766	broad.mit.edu	36	10	72190421	72190421	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080722	exon22	c.C3478A	p.P1160T	.	.	.
CDH23	64072	broad.mit.edu	36	10	73161949	73161949	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022124	exon31	c.C3915T	p.N1305N	.	.	.
MYOZ1	58529	broad.mit.edu	36	10	75063760	75063760	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021245	exon5	c.C572A	p.A191D	.	.	.
POLR3A	11128	broad.mit.edu	36	10	79411249	79411249	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007055	exon29	c.C3834T	p.H1278H	.	.	.
TAF3	83860	broad.mit.edu	36	10	8046798	8046798	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031923	exon3	c.C1319T	p.A440V	.	.	.
LRIT1	26103	broad.mit.edu	36	10	85982417	85982417	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015613	exon4	c.C1118T	p.A373V	.	.	.
RGR	5995	broad.mit.edu	36	10	85998676	85998676	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001012720	exon3	c.G255A	p.S85S	.	.	.
FAM35A	54537	broad.mit.edu	36	10	88901810	88901810	+	Missense_Mutation	SNP	C	A	A	rs3129516	unknown	TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019054	exon3	c.C719A	p.T240K	.	.	.
CPEB3	22849	broad.mit.edu	36	10	93990085	93990085	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014912	exon2	c.G3A	p.M1I	.	.	.
EXOC6	54536	broad.mit.edu	36	10	94665500	94665500	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013848	exon7	c.G654A	p.Q218Q	.	.	.
SORBS1	10580	broad.mit.edu	36	10	97086441	97086441	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001034954	exon28	c.G3466A	p.V1156M	.	.	.
ADAM12	8038	broad.mit.edu	36	10	127714805	127714805	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003474	exon21	c.2438delA	p.Q813fs	.	.	.
C10orf90	118611	broad.mit.edu	36	10	128183226	128183226	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004298	exon3	c.533delC	p.P178fs	.	.	.
EBF3	253738	broad.mit.edu	36	10	131556115	131556115	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005463	exon9	c.806delG	p.G269fs	.	.	.
ANKRD30A	91074	broad.mit.edu	36	10	37470730	37470730	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052997	exon7	c.731delA	p.E244fs	.	.	.
KIF20B	9585	broad.mit.edu	36	10	91504301	91504301	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016195	exon26	c.4274delA	p.E1425fs	.	.	.
EFNA5	1946	broad.mit.edu	36	5	106790901	106790901	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001962	exon2	c.C334T	p.L112L	.	.	.
PJA2	9867	broad.mit.edu	36	5	108742565	108742565	+	Silent	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014819	exon4	c.T522C	p.H174H	.	.	.
WDR36	134430	broad.mit.edu	36	5	110467932	110467932	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139281	exon8	c.C1056T	p.G352G	.	.	.
APC	324	broad.mit.edu	36	5	112156090	112156090	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127510	exon8	c.C694T	p.R232X	APC,large_intestine,NS,Substitution - Nonsense,0	.	.
APC	324	broad.mit.edu	36	5	112203538	112203538	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.C4294T	p.R1432X	APC,large_intestine,rectum,Substitution - Nonsense,0	.	.
DCP2	167227	broad.mit.edu	36	5	112365050	112365050	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152624	exon6	c.C683T	p.A228V	.	.	.
CTNND2	1501	broad.mit.edu	36	5	11399700	11399700	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001332	exon9	c.G1412A	p.R471H	.	.	.
AP3S1	1176	broad.mit.edu	36	5	115233625	115233625	+	Silent	SNP	A	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001284	exon3	c.A174T	p.G58G	.	.	.
ALDH7A1	501	broad.mit.edu	36	5	125939033	125939033	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001182	exon7	c.C673T	p.L225F	.	.	.
FBN2	2201	broad.mit.edu	36	5	127699586	127699586	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001999	exon28	c.C3717T	p.G1239G	.	.	.
RAPGEF6	51735	broad.mit.edu	36	5	130810142	130810142	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164387	exon24	c.C3393T	p.L1131L	.	.	.
TRPC7	57113	broad.mit.edu	36	5	135720531	135720531	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020389	exon2	c.C444T	p.D148D	.	.	.
CDC25C	995	broad.mit.edu	36	5	137650790	137650790	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001790	exon11	c.C993T	p.R331R	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13770543	13770543	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001369	exon73	c.C12586A	p.Q4196K	.	.	.
EGR1	1958	broad.mit.edu	36	5	137831160	137831160	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001964	exon2	c.C1123T	p.R375C	.	.	.
PCDHA2	56146	broad.mit.edu	36	5	140156663	140156663	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018905	exon1	c.C1930T	p.R644X	.	.	.
PCDHA3	56145	broad.mit.edu	36	5	140162074	140162074	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031497	exon1	c.G1108A	p.A370T	.	.	.
PCDHA5	56143	broad.mit.edu	36	5	140182011	140182011	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018908	exon1	c.C467T	p.A156V	.	.	.
PCDHB6	56130	broad.mit.edu	36	5	140511546	140511546	+	Silent	SNP	C	T	T	rs17844572	unknown	TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018939	exon1	c.C1524T	p.N508N	.	.	.
PCDHGB3	56102	broad.mit.edu	36	5	140731706	140731706	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018924	exon1	c.G1561A	p.D521N	.	.	.
ARAP3	64411	broad.mit.edu	36	5	141014044	141014044	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022481	exon33	c.G4292T	p.W1431L	.	.	.
ARAP3	64411	broad.mit.edu	36	5	141040174	141040174	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022481	exon2	c.G64A	p.A22T	.	.	.
SPRY4	81848	broad.mit.edu	36	5	141674132	141674132	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030964	exon3	c.C795T	p.S265S	.	.	.
RBM27	54439	broad.mit.edu	36	5	145589597	145589597	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018989	exon5	c.C520T	p.R174X	.	.	.
SLC6A3	6531	broad.mit.edu	36	5	1496096	1496096	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001044	exon2	c.G217A	p.V73I	.	.	.
SYNPO	11346	broad.mit.edu	36	5	150009911	150009911	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166208	exon3	c.C2613T	p.P871P	.	.	.
MYOZ3	91977	broad.mit.edu	36	5	150030349	150030349	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001122853	exon3	c.C172T	p.R58C	.	.	.
GPX3	2878	broad.mit.edu	36	5	150387769	150387769	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002084	exon5	c.G566T	p.G189V	.	.	.
NMUR2	56923	broad.mit.edu	36	5	151764366	151764366	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020167	exon1	c.G502A	p.G168S	.	.	.
GRIA1	2890	broad.mit.edu	36	5	153162221	153162221	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001114183	exon15	c.G2498A	p.R833H	.	.	.
GEMIN5	25929	broad.mit.edu	36	5	154291311	154291311	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015465	exon5	c.C681T	p.N227N	.	.	.
FAM71B	153745	broad.mit.edu	36	5	156522401	156522401	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130899	exon2	c.T1453C	p.Y485H	.	.	.
MYO10	4651	broad.mit.edu	36	5	16734496	16734496	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012334	exon32	c.G4306A	p.A1436T	.	.	.
SLIT3	6586	broad.mit.edu	36	5	168043659	168043659	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003062	exon32	c.C3576T	p.N1192N	.	.	.
MYO10	4651	broad.mit.edu	36	5	16819264	16819264	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012334	exon11	c.G1104T	p.Q368H	.	.	.
DOCK2	1794	broad.mit.edu	36	5	169416315	169416315	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004946	exon43	c.C4345T	p.R1449C	.	.	.
GABRP	2568	broad.mit.edu	36	5	170154814	170154814	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014211	exon5	c.C265T	p.R89X	.	.	.
CDHR2	54825	broad.mit.edu	36	5	175948769	175948769	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171976	exon22	c.C2988T	p.D996D	.	.	.
HK3	3101	broad.mit.edu	36	5	176248031	176248031	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002115	exon10	c.C1212T	p.A404A	.	.	.
LMAN2	10960	broad.mit.edu	36	5	176693958	176693958	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006816	exon7	c.G843A	p.T281T	.	.	.
GRM6	2916	broad.mit.edu	36	5	178351649	178351649	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000843	exon2	c.C546T	p.S182S	.	.	.
ADAMTS2	9509	broad.mit.edu	36	5	178473712	178473712	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014244	exon22	c.G3398A	p.R1133Q	.	.	.
MGAT4B	11282	broad.mit.edu	36	5	179161703	179161703	+	Silent	SNP	T	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_054013	exon1	c.A15C	p.A5A	.	.	.
C5orf45	51149	broad.mit.edu	36	5	179197450	179197450	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017987	exon5	c.C414T	p.S138S	.	.	.
CDH18	1016	broad.mit.edu	36	5	19509546	19509546	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004934	exon13	c.A1919G	p.K640R	.	.	.
PLEKHG4B	153478	broad.mit.edu	36	5	209250	209250	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052909	exon8	c.T1205G	p.L402R	.	.	.
PRDM9	56979	broad.mit.edu	36	5	23544957	23544957	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020227	exon2	c.C58T	p.R20W	.	.	.
DROSHA	29102	broad.mit.edu	36	5	31500163	31500163	+	Silent	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013235	exon19	c.A2511G	p.E837E	.	.	.
PDZD2	23037	broad.mit.edu	36	5	32096867	32096867	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178140	exon13	c.G2321A	p.R774H	.	.	.
PDZD2	23037	broad.mit.edu	36	5	32109869	32109869	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178140	exon17	c.C2900T	p.A967V	.	.	.
BRIX1	55299	broad.mit.edu	36	5	34959045	34959045	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018321	exon8	c.C612T	p.H204H	.	.	.
HEATR7B2	133558	broad.mit.edu	36	5	41036205	41036205	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173489	exon39	c.C4356T	p.C1452C	.	.	.
HCN1	348980	broad.mit.edu	36	5	45298225	45298225	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021072	exon8	c.C2228T	p.P743L	.	.	.
MAST4	375449	broad.mit.edu	36	5	66497168	66497168	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015183	exon28	c.G5838A	p.P1946P	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71525796	71525796	+	Silent	SNP	C	T	T	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005909	exon5	c.C858T	p.G286G	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71528709	71528709	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005909	exon5	c.G3771A	p.P1257P	.	.	.
BTF3	689	broad.mit.edu	36	5	72834680	72834680	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001207	exon4	c.G367A	p.E123K	.	.	.
THBS4	7060	broad.mit.edu	36	5	79390299	79390299	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003248	exon5	c.G662A	p.R221Q	.	.	.
ANKRD34B	340120	broad.mit.edu	36	5	79890863	79890863	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004441	exon5	c.C732T	p.H244H	.	.	.
SEMA5A	9037	broad.mit.edu	36	5	9107218	9107218	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003966	exon19	c.C2670T	p.C890C	.	.	.
POU5F2	134187	broad.mit.edu	36	5	93102341	93102341	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153216	exon1	c.T685C	p.F229L	.	.	.
SPATA9	83890	broad.mit.edu	36	5	95025453	95025453	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031952	exon4	c.C434T	p.T145I	.	.	.
PCSK1	5122	broad.mit.edu	36	5	95754620	95754620	+	Silent	SNP	G	A	A	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177875	exon14	c.C1962T	p.Y654Y	.	.	.
TAF9	6880	broad.mit.edu	36	5	68697046	68697046	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003187	exon3	c.275delT	p.L92fs	.	.	.
FAR1	84188	broad.mit.edu	36	11	13689933	13689933	+	Splice_Site	SNP	T	C	C	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
TAZ	6901	broad.mit.edu	36	X	153301668	153301668	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AG-A02N-01	TCGA-AG-A02N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
