Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ADAMTS2	9509	hgsc.bcm.edu	37	5	178559878	178559878	+	Silent	SNP	G	G	A	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ALKBH8	91801	hgsc.bcm.edu	37	11	107375723	107375723	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
AMAC1	146861	hgsc.bcm.edu	37	17	33520323	33520323	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ANKRD35	148741	hgsc.bcm.edu	37	1	145562502	145562504	+	In_Frame_Del	DEL	GGC	GGC	-	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	GGC	GGC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C1QL1	10882	hgsc.bcm.edu	37	17	43037729	43037729	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CHRNA7	1139	hgsc.bcm.edu	37	15	32449875	32449876	+	Frame_Shift_Del	DEL	TG	TG	-	rs67158670	unknown	TCGA-AK-3434-01	TCGA-AK-3434-01	TG	TG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CHRNA7	1139	hgsc.bcm.edu	37	15	32450704	32450704	+	Silent	SNP	G	G	A	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CNTNAP4	85445	hgsc.bcm.edu	37	16	76482716	76482716	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CRTAM	56253	hgsc.bcm.edu	37	11	122733210	122733210	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CSMD1	64478	hgsc.bcm.edu	37	8	2813241	2813241	+	Silent	SNP	G	G	A	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CXorf40B	541578	hgsc.bcm.edu	37	X	149100904	149100904	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DEFB105A	245908	hgsc.bcm.edu	37	8	7679549	7679549	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DEFB4A	1673	hgsc.bcm.edu	37	8	7754021	7754021	+	Silent	SNP	T	T	C	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DISP1	84976	hgsc.bcm.edu	37	1	223116653	223116653	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ECT2L	345930	hgsc.bcm.edu	37	6	139222225	139222225	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAIM2	23017	hgsc.bcm.edu	37	12	50284501	50284501	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM26E	254228	hgsc.bcm.edu	37	6	116833204	116833204	+	Silent	SNP	T	T	G	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM82A2	55177	hgsc.bcm.edu	37	15	41037298	41037298	+	Silent	SNP	C	C	T	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GOLGA3	2802	hgsc.bcm.edu	37	12	133393164	133393164	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GREB1L	80000	hgsc.bcm.edu	37	18	19088471	19088471	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GRIN2C	2905	hgsc.bcm.edu	37	17	72842988	72842988	+	Silent	SNP	G	G	A	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GUF1	60558	hgsc.bcm.edu	37	4	44700675	44700675	+	Silent	SNP	C	C	T	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ITGA6	3655	hgsc.bcm.edu	37	2	173349850	173349850	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KCNH4	23415	hgsc.bcm.edu	37	17	40327694	40327694	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIAA1486	57624	hgsc.bcm.edu	37	2	226273688	226273688	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIF2A	3796	hgsc.bcm.edu	37	5	61659522	61659522	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KLK10	5655	hgsc.bcm.edu	37	19	51519366	51519366	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LAMA2	3908	hgsc.bcm.edu	37	6	129796548	129796548	+	Splice_Site	SNP	T	T	C	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LCMT2	9836	hgsc.bcm.edu	37	15	43621583	43621583	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MAN2A1	4124	hgsc.bcm.edu	37	5	109049281	109049281	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MAT2A	4144	hgsc.bcm.edu	37	2	85768223	85768223	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MCPH1	79648	hgsc.bcm.edu	37	8	6312675	6312675	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MOCOS	55034	hgsc.bcm.edu	37	18	33848514	33848514	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MTERFD2	130916	hgsc.bcm.edu	37	2	242038907	242038907	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MUC2	4583	hgsc.bcm.edu	37	11	1092238	1092238	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MUC4	4585	hgsc.bcm.edu	37	3	195509374	195509374	+	Missense_Mutation	SNP	T	T	G	rs62282479	unknown	TCGA-AK-3434-01	TCGA-AK-3434-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NCOA1	8648	hgsc.bcm.edu	37	2	24933874	24933874	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NR2C2	7182	hgsc.bcm.edu	37	3	15076190	15076190	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NUDCD2	134492	hgsc.bcm.edu	37	5	162881024	162881024	+	Silent	SNP	G	G	T	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NUDT9	53343	hgsc.bcm.edu	37	4	88359433	88359433	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OTOF	9381	hgsc.bcm.edu	37	2	26687848	26687848	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PBRM1	55193	hgsc.bcm.edu	37	3	52610695	52610695	+	Nonsense_Mutation	SNP	G	G	A	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PDIA6	10130	hgsc.bcm.edu	37	2	10924442	10924442	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RBP4	5950	hgsc.bcm.edu	37	10	95353602	95353602	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SETD2	29072	hgsc.bcm.edu	37	3	47142951	47142951	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SFRS12IP1	285672	hgsc.bcm.edu	37	5	64020311	64020311	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SFRS18	25957	hgsc.bcm.edu	37	6	99860572	99860572	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SGSM3	27352	hgsc.bcm.edu	37	22	40803848	40803848	+	Splice_Site	SNP	G	G	C	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC4A3	6508	hgsc.bcm.edu	37	2	220497112	220497112	+	Silent	SNP	T	T	C	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SMPD2	6610	hgsc.bcm.edu	37	6	109764751	109764751	+	Silent	SNP	G	G	T	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SNRNP200	23020	hgsc.bcm.edu	37	2	96959208	96959208	+	Silent	SNP	A	A	G	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SREBF2	6721	hgsc.bcm.edu	37	22	42269953	42269953	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SYNE2	23224	hgsc.bcm.edu	37	14	64554560	64554560	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SYNJ1	8867	hgsc.bcm.edu	37	21	34053894	34053894	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TBC1D14	57533	hgsc.bcm.edu	37	4	7012491	7012491	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TCF20	6942	hgsc.bcm.edu	37	22	42609902	42609902	+	Silent	SNP	G	G	T	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TDRD6	221400	hgsc.bcm.edu	37	6	46659688	46659688	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TMEM33	55161	hgsc.bcm.edu	37	4	41941346	41941346	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TRIM2	23321	hgsc.bcm.edu	37	4	154197264	154197264	+	Silent	SNP	C	C	T	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TYR	7299	hgsc.bcm.edu	37	11	88911155	88911155	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
VTN	7448	hgsc.bcm.edu	37	17	26697201	26697201	+	Silent	SNP	G	G	T	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZHX2	22882	hgsc.bcm.edu	37	8	123964182	123964182	+	Silent	SNP	T	T	A	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZKSCAN2	342357	hgsc.bcm.edu	37	16	25264266	25264266	+	Splice_Site	SNP	C	C	T	novel	.	TCGA-AK-3434-01	TCGA-AK-3434-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
