Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ANGPT1	284	hgsc.bcm.edu	37	8	108348486	108348486	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ASH1L	55870	hgsc.bcm.edu	37	1	155449218	155449218	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ASTN2	23245	hgsc.bcm.edu	37	9	119491277	119491277	+	Missense_Mutation	SNP	C	C	T	rs72765708	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATXN2	6311	hgsc.bcm.edu	37	12	111923629	111923629	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
B4GALT5	9334	hgsc.bcm.edu	37	20	48273175	48273175	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BRI3	25798	hgsc.bcm.edu	37	7	97911679	97911679	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C19orf51	352909	hgsc.bcm.edu	37	19	55670934	55670934	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CDH12	1010	hgsc.bcm.edu	37	5	21760751	21760751	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CLRN1	7401	hgsc.bcm.edu	37	3	150659493	150659493	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CUEDC2	79004	hgsc.bcm.edu	37	10	104184284	104184284	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAH	2184	hgsc.bcm.edu	37	15	80452758	80452758	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAT3	120114	hgsc.bcm.edu	37	11	92088147	92088147	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
INADL	10207	hgsc.bcm.edu	37	1	62288675	62288675	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KRT6B	3854	hgsc.bcm.edu	37	12	52842629	52842629	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LRP1	4035	hgsc.bcm.edu	37	12	57577934	57577934	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MTCP1NB	100272147	hgsc.bcm.edu	37	X	154290213	154290213	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MUC4	4585	hgsc.bcm.edu	37	3	195509886	195509886	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MUC4	4585	hgsc.bcm.edu	37	3	195512343	195512343	+	Silent	SNP	G	G	A	rs113457754	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MYH1	4619	hgsc.bcm.edu	37	17	10409332	10409332	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NRXN1	9378	hgsc.bcm.edu	37	2	50149352	50149352	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR7D4	125958	hgsc.bcm.edu	37	19	9325393	9325393	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PAPSS1	9061	hgsc.bcm.edu	37	4	108608293	108608293	+	Nonsense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PDE11A	50940	hgsc.bcm.edu	37	2	178936994	178936994	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PGLYRP3	114771	hgsc.bcm.edu	37	1	153271694	153271694	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PHTF2	57157	hgsc.bcm.edu	37	7	77469587	77469587	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PPP1R3F	89801	hgsc.bcm.edu	37	X	49143162	49143162	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PTEN	5728	hgsc.bcm.edu	37	10	89690804	89690804	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RBM11	54033	hgsc.bcm.edu	37	21	15592035	15592035	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RCC2	55920	hgsc.bcm.edu	37	1	17739593	17739593	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RELN	5649	hgsc.bcm.edu	37	7	103234215	103234215	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SIGLEC5	8778	hgsc.bcm.edu	37	19	52131256	52131257	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC16A9	220963	hgsc.bcm.edu	37	10	61443903	61443903	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC9A2	6549	hgsc.bcm.edu	37	2	103281704	103281704	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SNRNP27	11017	hgsc.bcm.edu	37	2	70122252	70122252	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
STAMBP	10617	hgsc.bcm.edu	37	2	74087228	74087228	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SYT5	6861	hgsc.bcm.edu	37	19	55686305	55686305	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TCF12	6938	hgsc.bcm.edu	37	15	57458628	57458628	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TMEM154	201799	hgsc.bcm.edu	37	4	153564272	153564272	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TRIM59	286827	hgsc.bcm.edu	37	3	160156326	160156326	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
UBR3	130507	hgsc.bcm.edu	37	2	170885902	170885902	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
YEATS2	55689	hgsc.bcm.edu	37	3	183493770	183493770	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AK-3436-01	TCGA-AK-3436-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
