Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA4	24	broad.mit.edu	37	1	94467504	94467504	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ABCA7	10347	broad.mit.edu	37	19	1062196	1062196	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ADAMTS18	170692	broad.mit.edu	37	16	77327137	77327137	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ARID1B	57492	broad.mit.edu	37	6	157256650	157256650	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ATRX	546	broad.mit.edu	37	X	76938444	76938444	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
B3GNT3	10331	broad.mit.edu	37	19	17922535	17922535	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CACNA1H	8912	broad.mit.edu	37	16	1248758	1248758	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CACNG4	27092	broad.mit.edu	37	17	65026648	65026648	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DSP	1832	broad.mit.edu	37	6	7568820	7568820	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EHBP1L1	254102	broad.mit.edu	37	11	65350682	65350682	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ETV3L	440695	broad.mit.edu	37	1	157062456	157062456	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FARP2	9855	broad.mit.edu	37	2	242429390	242429390	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FSTL4	23105	broad.mit.edu	37	5	132561349	132561349	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
G6PC3	92579	broad.mit.edu	37	17	42152400	42152400	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HAO2	51179	broad.mit.edu	37	1	119929268	119929268	+	Silent	SNP	G	A	A	rs35295280	byFrequency	TCGA-AK-3447-01	TCGA-AK-3447-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HIVEP3	59269	broad.mit.edu	37	1	42048988	42048988	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IMPG2	50939	broad.mit.edu	37	3	100961671	100961671	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ITGA6	3655	broad.mit.edu	37	2	173355800	173355800	+	Missense_Mutation	SNP	G	A	A	rs61737182	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ITGAE	3682	broad.mit.edu	37	17	3649145	3649145	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ITIH4	3700	broad.mit.edu	37	3	52859904	52859904	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIAA0232	9778	broad.mit.edu	37	4	6882679	6882679	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LIAS	11019	broad.mit.edu	37	4	39469185	39469185	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170002321	170002321	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRRC33	375387	broad.mit.edu	37	3	196388145	196388145	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRRC50	123872	broad.mit.edu	37	16	84203706	84203706	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MED27	9442	broad.mit.edu	37	9	134889767	134889767	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
METTL11A	28989	broad.mit.edu	37	9	132396435	132396435	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MNAT1	4331	broad.mit.edu	37	14	61262989	61262989	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MUT	4594	broad.mit.edu	37	6	49426975	49426975	+	Missense_Mutation	SNP	T	C	C	rs115923556	by1000genomes	TCGA-AK-3447-01	TCGA-AK-3447-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NAA15	80155	broad.mit.edu	37	4	140281033	140281033	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NMRAL1	57407	broad.mit.edu	37	16	4511943	4511943	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NTNG2	84628	broad.mit.edu	37	9	135073688	135073688	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PA2G4	5036	broad.mit.edu	37	12	56504194	56504194	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCDHAC2	56134	broad.mit.edu	37	5	140348049	140348049	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PKD1	5310	broad.mit.edu	37	16	2168164	2168164	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PLA2G4E	123745	broad.mit.edu	37	15	42298192	42298192	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PPP1R10	5514	broad.mit.edu	37	6	30571561	30571561	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PSG9	5678	broad.mit.edu	37	19	43772016	43772016	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RNF133	168433	broad.mit.edu	37	7	122338071	122338071	+	Missense_Mutation	SNP	A	G	G	rs113127267	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RSL1D1	26156	broad.mit.edu	37	16	11935588	11935588	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SNRNP25	79622	broad.mit.edu	37	16	106598	106598	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SUV420H1	51111	broad.mit.edu	37	11	67925970	67925970	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SYNGAP1	8831	broad.mit.edu	37	6	33406300	33406300	+	Silent	SNP	T	C	C	rs72887798	by1000genomes	TCGA-AK-3447-01	TCGA-AK-3447-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
THBS2	7058	broad.mit.edu	37	6	169648775	169648775	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TP53BP2	7159	broad.mit.edu	37	1	223972001	223972001	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TTC16	158248	broad.mit.edu	37	9	130488637	130488637	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TTLL1	25809	broad.mit.edu	37	22	43447837	43447837	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VNN1	8876	broad.mit.edu	37	6	133014269	133014269	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31621532	31621532	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AK-3447-01	TCGA-AK-3447-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
