Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCG4	64137	hgsc.bcm.edu	37	11	119031335	119031335	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
AFAP1L2	84632	hgsc.bcm.edu	37	10	116082996	116082996	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
AFF4	27125	hgsc.bcm.edu	37	5	132270528	132270528	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
APC	324	hgsc.bcm.edu	37	5	112175908	112175908	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BAP1	8314	hgsc.bcm.edu	37	3	52442521	52442521	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C7orf23	79161	hgsc.bcm.edu	37	7	86826037	86826037	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CAND1	55832	hgsc.bcm.edu	37	12	67700071	67700071	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CAPZA2	830	hgsc.bcm.edu	37	7	116556165	116556165	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CARD11	84433	hgsc.bcm.edu	37	7	2954892	2954892	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CC2D2A	57545	hgsc.bcm.edu	37	4	15513048	15513048	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CCDC108	255101	hgsc.bcm.edu	37	2	219900064	219900064	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CLEC9A	283420	hgsc.bcm.edu	37	12	10217396	10217396	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CTNND2	1501	hgsc.bcm.edu	37	5	11018139	11018139	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CYP4A11	1579	hgsc.bcm.edu	37	1	47402390	47402390	+	Nonsense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DDC	1644	hgsc.bcm.edu	37	7	50611748	50611748	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DNAJA4	55466	hgsc.bcm.edu	37	15	78562926	78562926	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DYRK2	8445	hgsc.bcm.edu	37	12	68052356	68052356	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ERCC1	2067	hgsc.bcm.edu	37	19	45916986	45916986	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EVI5	7813	hgsc.bcm.edu	37	1	93089777	93089777	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAM183A	440585	hgsc.bcm.edu	37	1	43616487	43616487	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HAUS3	79441	hgsc.bcm.edu	37	4	2233809	2233809	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
IGF2R	3482	hgsc.bcm.edu	37	6	160468352	160468352	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
IPO5	3843	hgsc.bcm.edu	37	13	98671935	98671935	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ITGA6	3655	hgsc.bcm.edu	37	2	173352130	173352130	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KARS	3735	hgsc.bcm.edu	37	16	75678248	75678248	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KCNT2	343450	hgsc.bcm.edu	37	1	196250087	196250087	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIAA0564	23078	hgsc.bcm.edu	37	13	42263606	42263606	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIF20B	9585	hgsc.bcm.edu	37	10	91469205	91469205	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIF21B	23046	hgsc.bcm.edu	37	1	200960791	200960791	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KRTAP10-6	386674	hgsc.bcm.edu	37	21	46011619	46011619	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LRRC8D	55144	hgsc.bcm.edu	37	1	90400298	90400298	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MED14	9282	hgsc.bcm.edu	37	X	40568603	40568603	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MME	4311	hgsc.bcm.edu	37	3	154856020	154856020	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MME	4311	hgsc.bcm.edu	37	3	154856021	154856021	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MTMR12	54545	hgsc.bcm.edu	37	5	32242165	32242165	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MUC2	4583	hgsc.bcm.edu	37	11	1097746	1097746	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NAT1	9	hgsc.bcm.edu	37	8	18079815	18079815	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NEK10	152110	hgsc.bcm.edu	37	3	27332981	27332982	+	Frame_Shift_Ins	INS	-	-	AA	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR1F1	4992	hgsc.bcm.edu	37	16	3254418	3254418	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR8B12	219858	hgsc.bcm.edu	37	11	124413242	124413242	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PEAR1	375033	hgsc.bcm.edu	37	1	156880111	156880111	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PIAS1	8554	hgsc.bcm.edu	37	15	68445966	68445966	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PKD1	5310	hgsc.bcm.edu	37	16	2158399	2158399	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PKD1	5310	hgsc.bcm.edu	37	16	2158400	2158400	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PTPRG	5793	hgsc.bcm.edu	37	3	62258667	62258667	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
QARS	5859	hgsc.bcm.edu	37	3	49137480	49137480	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RALGAPA2	57186	hgsc.bcm.edu	37	20	20493446	20493446	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RAP1GDS1	5910	hgsc.bcm.edu	37	4	99325731	99325731	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RBM23	55147	hgsc.bcm.edu	37	14	23371499	23371499	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RINL	126432	hgsc.bcm.edu	37	19	39362295	39362295	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RNF213	57674	hgsc.bcm.edu	37	17	78337077	78337077	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RNF213	57674	hgsc.bcm.edu	37	17	78337081	78337081	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SCN11A	11280	hgsc.bcm.edu	37	3	38966945	38966945	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SCP2	6342	hgsc.bcm.edu	37	1	53516318	53516318	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SPC25	57405	hgsc.bcm.edu	37	2	169745777	169745777	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SPHKAP	80309	hgsc.bcm.edu	37	2	228883640	228883640	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SRSF11	9295	hgsc.bcm.edu	37	1	70694139	70694139	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
STX2	2054	hgsc.bcm.edu	37	12	131311785	131311785	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SYTL5	94122	hgsc.bcm.edu	37	X	37984722	37984722	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TSGA10	80705	hgsc.bcm.edu	37	2	99725301	99725301	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TSPAN32	10077	hgsc.bcm.edu	37	11	2329985	2329985	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TTN	7273	hgsc.bcm.edu	37	2	179582267	179582267	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
UGT1A7	54577	hgsc.bcm.edu	37	2	234591142	234591142	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ULK2	9706	hgsc.bcm.edu	37	17	19680892	19680892	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
URB2	9816	hgsc.bcm.edu	37	1	229773365	229773365	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
XIRP2	129446	hgsc.bcm.edu	37	2	167760143	167760143	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZMYM1	79830	hgsc.bcm.edu	37	1	35578967	35578967	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF224	7767	hgsc.bcm.edu	37	19	44610924	44610924	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF235	9310	hgsc.bcm.edu	37	19	44792129	44792129	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF641	121274	hgsc.bcm.edu	37	12	48737147	48737147	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AK-3451-01	TCGA-AK-3451-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
