Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AARS2	57505	hgsc.bcm.edu	37	6	44274036	44274036	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ABCD4	5826	hgsc.bcm.edu	37	14	74763075	74763075	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ANK3	288	hgsc.bcm.edu	37	10	61831542	61831542	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
APC	324	hgsc.bcm.edu	37	5	112162833	112162833	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ARID1A	8289	hgsc.bcm.edu	37	1	27059238	27059238	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATP8A1	10396	hgsc.bcm.edu	37	4	42509034	42509034	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BAI3	577	hgsc.bcm.edu	37	6	70040461	70040461	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C21orf56	84221	hgsc.bcm.edu	37	21	47588323	47588323	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CEP164	22897	hgsc.bcm.edu	37	11	117263760	117263760	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
COBLL1	22837	hgsc.bcm.edu	37	2	165561493	165561493	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
COL27A1	85301	hgsc.bcm.edu	37	9	117026664	117026664	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CRIPAK	285464	hgsc.bcm.edu	37	4	1389054	1389055	+	Frame_Shift_Ins	INS	-	-	CA	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CTSK	1513	hgsc.bcm.edu	37	1	150778608	150778608	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DLX2	1746	hgsc.bcm.edu	37	2	172966865	172966865	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DNHD1	144132	hgsc.bcm.edu	37	11	6567895	6567896	+	In_Frame_Ins	INS	-	-	TGCCCTACTGCA	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAM47A	158724	hgsc.bcm.edu	37	X	34150181	34150181	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FLJ43860	389690	hgsc.bcm.edu	37	8	142459777	142459778	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FREM2	341640	hgsc.bcm.edu	37	13	39262990	39262990	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HIVEP1	3096	hgsc.bcm.edu	37	6	12123871	12123871	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HLA-B	3106	hgsc.bcm.edu	37	6	31324604	31324604	+	Frame_Shift_Del	DEL	T	T	-	rs67385961	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KAL1	3730	hgsc.bcm.edu	37	X	8591673	8591673	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KRTAP4-3	85290	hgsc.bcm.edu	37	17	39324284	39324284	+	Silent	SNP	G	G	A	rs78226710	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LOXL4	84171	hgsc.bcm.edu	37	10	100022771	100022771	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MCRS1	10445	hgsc.bcm.edu	37	12	49954117	49954117	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MMP16	4325	hgsc.bcm.edu	37	8	89086852	89086852	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MYH11	4629	hgsc.bcm.edu	37	16	15854403	15854403	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NDUFS1	4719	hgsc.bcm.edu	37	2	207011714	207011714	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NHEDC2	133308	hgsc.bcm.edu	37	4	103947531	103947531	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NLRC5	84166	hgsc.bcm.edu	37	16	57088695	57088695	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NPTX2	4885	hgsc.bcm.edu	37	7	98256632	98256632	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NUCB1	4924	hgsc.bcm.edu	37	19	49404186	49404186	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NYNRIN	57523	hgsc.bcm.edu	37	14	24886608	24886608	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR8D1	283159	hgsc.bcm.edu	37	11	124179777	124179777	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PCLO	27445	hgsc.bcm.edu	37	7	82579567	82579567	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PTGDR	5729	hgsc.bcm.edu	37	14	52741643	52741643	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RC3H2	54542	hgsc.bcm.edu	37	9	125622278	125622278	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RGS7	6000	hgsc.bcm.edu	37	1	240977019	240977019	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RIMS1	22999	hgsc.bcm.edu	37	6	72975153	72975153	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RLTPR	146206	hgsc.bcm.edu	37	16	67690372	67690372	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SCN11A	11280	hgsc.bcm.edu	37	3	38888542	38888542	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC29A1	2030	hgsc.bcm.edu	37	6	44197391	44197391	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SMEK1	55671	hgsc.bcm.edu	37	14	91942217	91942217	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SQRDL	58472	hgsc.bcm.edu	37	15	45965852	45965852	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TAS1R3	83756	hgsc.bcm.edu	37	1	1268924	1268924	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
VHL	7428	hgsc.bcm.edu	37	3	10188217	10188217	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF215	7762	hgsc.bcm.edu	37	11	6964378	6964378	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF844	284391	hgsc.bcm.edu	37	19	12187458	12187458	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AK-3456-01	TCGA-AK-3456-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
