Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADAM8	101	genome.wustl.edu	37	10	135085426	135085426	+	Silent	SNP	A	A	G	rs1131719	byCluster;byHapMap;by1000genomes	TCGA-AN-A041-01	TCGA-AN-A041-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	135085426	135085426	A	G	SNP	ADAM8	ENST00000415217	human	ensembl	57_37b	-1	known	silent	c.990	p.C330	0.994	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,PatternScan_ZINC_PROTEASE,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR,HMMPfam_EGF_2,PatternScan_EGF_2"	-		
ARHGAP12	94134	genome.wustl.edu	37	10	32106730	32106730	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AN-A041-01	TCGA-AN-A041-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	32106730	32106730	T	C	SNP	ARHGAP12	NM_018287	human	genbank	57_37b	-1	provisional	missense	c.1717	p.T573A	1.000	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors	
CCT6B	10693	genome.wustl.edu	37	17	33285656	33285656	+	Missense_Mutation	SNP	C	C	T	rs115540514	byCluster;by1000genomes	TCGA-AN-A041-01	TCGA-AN-A041-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	33285656	33285656	C	T	SNP	CCT6B	NM_006584	human	genbank	57_37b	-1	reviewed	missense	c.259	p.V87I	0.995	superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1,PatternScan_TCP1_3	superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1,PatternScan_TCP1_1,PatternScan_TCP1_2,PatternScan_TCP1_3,superfamily_GroEL-intermediate domain like,superfamily_GroEL apical domain-like	-		
CD1B	910	genome.wustl.edu	37	1	158299375	158299375	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A041-01	TCGA-AN-A041-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158299375	158299375	C	T	SNP	CD1B	NM_001764	human	genbank	57_37b	-1	reviewed	missense	c.671	p.C224Y	0.992	superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407	-	no_errors	
CHAT	1103	genome.wustl.edu	37	10	50822376	50822376	+	Missense_Mutation	SNP	C	C	G	rs3810948	byCluster;byFrequency	TCGA-AN-A041-01	TCGA-AN-A041-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	50822376	50822376	C	G	SNP	CHAT	NM_020549	human	genbank	57_37b	+1	reviewed	missense	c.141	p.D47E	1.000	NULL	superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2	-		
DALRD3	55152	genome.wustl.edu	37	3	49055227	49055227	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AN-A041-01	TCGA-AN-A041-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49055227	49055227	C	-	DEL	DALRD3	NM_001009996	human	genbank	57_37b	-1	validated	frame_shift_del	c.537	p.W179fs	1.000	NULL	superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_DALR_1	(deletion:cds_exon[49055046,49055302])	no_errors	
DHX8	1659	genome.wustl.edu	37	17	41590796	41590796	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A041-01	TCGA-AN-A041-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	41590796	41590796	C	T	SNP	DHX8	NM_004941	human	genbank	57_37b	+1	reviewed	missense	c.2569	p.P857S	1.000	superfamily_SSF52540,HMMSmart_HELICc,HMMPfam_Helicase_C	superfamily_Nucleic_acid_OB,HMMPfam_S1,HMMSmart_S1,HMMSmart_DEXDc,superfamily_SSF52540,PatternScan_DEAH_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605	-	no_errors	
DMGDH	29958	genome.wustl.edu	37	5	78325833	78325833	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AN-A041-01	TCGA-AN-A041-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	78325833	78325833	T	C	SNP	DMGDH	NM_013391	human	genbank	57_37b	-1	reviewed	missense	c.1708	p.M570V	1.000	superfamily_Aminomethyltransferase folate-binding domain,HMMPfam_GCV_T	superfamily_FAD/NAD(P)-binding domain,HMMPfam_DAO,superfamily_FAD-linked reductases C-terminal domain,superfamily_Aminomethyltransferase folate-binding domain,HMMPfam_GCV_T,HMMPfam_GCV_T_C,superfamily_Aminomethyltransferase beta-barrel domain	-	no_errors	
DYNC1H1	1778	genome.wustl.edu	37	14	102494097	102494097	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A041-01	TCGA-AN-A041-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	102494097	102494097	G	A	SNP	DYNC1H1	NM_001376	human	genbank	57_37b	+1	reviewed	missense	c.9190	p.V3064I	1.000	superfamily_SSF52540,HMMSmart_AAA	HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors	
FLG	2312	genome.wustl.edu	37	1	152279873	152279873	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A041-01	TCGA-AN-A041-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152279873	152279873	A	G	SNP	FLG	NM_002016	human	genbank	57_37b	-1	reviewed	missense	c.7489	p.S2497P	0.000	NULL	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_Filaggrin	-	no_errors	
GATA3	2625	genome.wustl.edu	37	10	8111498	8111499	+	Frame_Shift_Del	DEL	GA	GA	-	novel	unknown	TCGA-AN-A041-01	TCGA-AN-A041-01	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8111498	8111499	GA	-	DEL	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.987_988	p.R330fs	1.000:1.000	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	(deletion:cds_exon[8111436,8111561])	no_errors	
ISG20L2	81875	genome.wustl.edu	37	1	156697031	156697031	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A041-01	TCGA-AN-A041-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156697031	156697031	C	A	SNP	ISG20L2	NM_030980	human	genbank	57_37b	-1	provisional	missense	c.414	p.K138N	0.992	NULL	superfamily_RNaseH_fold,HMMSmart_EXOIII,HMMPfam_Exonuc_X-T	-	no_errors	
LOC100287282	0	genome.wustl.edu	37	16	46660467	46660467	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A041-01	TCGA-AN-A041-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	46660467	46660467	G	T	SNP	LOC100287282	XM_002344121	human	genbank	57_37b	+1	model	missense	c.601	p.A201S	1.000	NULL	NULL	-	no_errors	
LOC100287866	0	genome.wustl.edu	37	22	22648281	22648281	+	RNA	SNP	A	G	G	rs12159559	byCluster	TCGA-AN-A041-01	TCGA-AN-A041-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	22648281	22648281	A	G	SNP	LOC100287866	XR_078578	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.345	-	-	-		
MED16	10025	genome.wustl.edu	37	19	868115	868115	+	Missense_Mutation	SNP	C	C	T	rs13090	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AN-A041-01	TCGA-AN-A041-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	868115	868115	C	T	SNP	MED16	NM_005481	human	genbank	57_37b	-1	validated	missense	c.2620	p.E874K	0.008	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-		
NCOA6	23054	genome.wustl.edu	37	20	33345587	33345587	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A041-01	TCGA-AN-A041-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	33345587	33345587	G	C	SNP	NCOA6	NM_014071	human	genbank	57_37b	-1	reviewed	missense	c.964	p.P322A	1.000	NULL	NULL	-	no_errors	
NKD2	85409	genome.wustl.edu	37	5	1034361	1034361	+	Silent	SNP	C	C	T	rs34805572	byCluster	TCGA-AN-A041-01	TCGA-AN-A041-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	1034361	1034361	C	T	SNP	NKD2	NM_033120	human	genbank	57_37b	+1	provisional	silent	c.342	p.C114	0.995	NULL	NULL	-		
PLXDC2	84898	genome.wustl.edu	37	10	20290912	20290912	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AN-A041-01	TCGA-AN-A041-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	20290912	20290912	C	A	SNP	PLXDC2	NM_032812	human	genbank	57_37b	+1	provisional	silent	c.321	p.I107	0.946	NULL	HMMPfam_PSI,HMMSmart_SM00423	-	no_errors	
RARB	5915	genome.wustl.edu	37	3	25502731	25502731	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A041-01	TCGA-AN-A041-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	25502731	25502731	C	T	SNP	RARB	NM_000965	human	genbank	57_37b	+1	reviewed	missense	c.205	p.P69S	1.000	NULL	superfamily_SSF57716,HMMSmart_ZnF_C4,HMMPfam_zf-C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	-	no_errors	
RBL2	5934	genome.wustl.edu	37	16	53476745	53476745	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A041-01	TCGA-AN-A041-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	53476745	53476745	C	T	SNP	RBL2	NM_005611	human	genbank	57_37b	+1	validated	missense	c.547	p.R183C	1.000	NULL	HMMSmart_CYCLIN,HMMPfam_RB_A,superfamily_Cyclin_like,HMMPfam_RB_B	-	no_errors	
RTN4	57142	genome.wustl.edu	37	2	55253661	55253661	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A041-01	TCGA-AN-A041-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	55253661	55253661	G	A	SNP	RTN4	NM_020532	human	genbank	57_37b	-1	reviewed	missense	c.1574	p.S525F	0.230	NULL	HMMPfam_Reticulon	-	no_errors	
SAFB	6294	genome.wustl.edu	37	19	5664427	5664427	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A041-01	TCGA-AN-A041-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	5664427	5664427	A	T	SNP	SAFB	NM_002967	human	genbank	57_37b	+1	reviewed	missense	c.2311	p.M771L	1.000	superfamily_SSF54928	superfamily_SSF68906,HMMPfam_SAP,HMMSmart_SAP,superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors	
SHC3	53358	genome.wustl.edu	37	9	91727508	91727508	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AN-A041-01	TCGA-AN-A041-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	91727508	91727508	T	G	SNP	SHC3	NM_016848	human	genbank	57_37b	-1	validated	silent	c.508	p.R170	1.000	superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID	superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-	no_errors	
SLC22A11	55867	genome.wustl.edu	37	11	64332848	64332848	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A041-01	TCGA-AN-A041-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64332848	64332848	G	T	SNP	SLC22A11	ENST00000456498	human	ensembl	57_37b	+1	known	missense	c.872	p.G291V	0.006	NULL	NULL	-	no_errors	
SNRNP200	23020	genome.wustl.edu	37	2	96944396	96944396	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A041-01	TCGA-AN-A041-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	96944396	96944396	G	C	SNP	SNRNP200	NM_014014	human	genbank	57_37b	-1	reviewed	missense	c.5377	p.L1793V	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMSmart_SM00611,HMMPfam_Sec63	-	no_errors	
STK3	6788	genome.wustl.edu	37	8	99719442	99719442	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A041-01	TCGA-AN-A041-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	99719442	99719442	C	A	SNP	STK3	NM_006281	human	genbank	57_37b	-1	validated	missense	c.449	p.G150V	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP	-	no_errors	
TFDP2	7029	genome.wustl.edu	37	3	141671468	141671493	+	Frame_Shift_Del	DEL	GACTGTTTGGGGCCAGGAACTGCCCA	GACTGTTTGGGGCCAGGAACTGCCCA	-	novel	unknown	TCGA-AN-A041-01	TCGA-AN-A041-01	GACTGTTTGGGGCCAGGAACTGCCCA	GACTGTTTGGGGCCAGGAACTGCCCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	141671468	141671493	GACTGTTTGGGGCCAGGAACTGCCCA	-	DEL	TFDP2	NM_006286	human	genbank	57_37b	-1	provisional	frame_shift_del	c.1048_1023	p.G342fs	1.000:0.997:1.000:1.000:1.000:0.978:0.928:0.908:0.997:1.000:1.000:1.000:0.998:0.957:0.995:0.998:0.940:0.921:0.218:0.385:0.843:0.994:0.991:0.994:0.976:0.001	NULL	HMMPfam_E2F_TDP,superfamily_SSF46785,HMMPfam_DP	(deletion:cds_exon[141671355,141671538])	no_errors	
TGFBI	7045	genome.wustl.edu	37	5	135385250	135385250	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A041-01	TCGA-AN-A041-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	135385250	135385250	C	T	SNP	TGFBI	NM_000358	human	genbank	57_37b	+1	reviewed	silent	c.894	p.G298	0.530	superfamily_FAS1 domain,HMMPfam_Fasciclin,HMMSmart_SM00554	HMMPfam_EMI,superfamily_FAS1 domain,HMMPfam_Fasciclin,HMMSmart_SM00554	-	no_errors	
TNFAIP8	25816	genome.wustl.edu	37	5	118728611	118728611	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A041-01	TCGA-AN-A041-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	118728611	118728611	C	T	SNP	TNFAIP8	NM_014350	human	genbank	57_37b	+1	validated	silent	c.132	p.D44	0.445	HMMPfam_DUF758	HMMPfam_DUF758	-	no_errors	
YKT6	10652	genome.wustl.edu	37	7	44247013	44247013	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A041-01	TCGA-AN-A041-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	44247013	44247013	C	T	SNP	YKT6	NM_006555	human	genbank	57_37b	+1	reviewed	silent	c.315	p.V105	0.002	superfamily_SNARE-like,HMMPfam_Synaptobrevin	superfamily_SNARE-like,HMMPfam_Synaptobrevin	-	no_errors	
ZAP70	7535	genome.wustl.edu	37	2	98354541	98354541	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A041-01	TCGA-AN-A041-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	98354541	98354541	C	T	SNP	ZAP70	NM_001079	human	genbank	57_37b	+1	reviewed	silent	c.1707	p.Y569	0.165	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
ZCCHC2	54877	genome.wustl.edu	37	18	60230264	60230264	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A041-01	TCGA-AN-A041-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	60230264	60230264	C	A	SNP	ZCCHC2	NM_017742	human	genbank	57_37b	+1	validated	missense	c.1573	p.P525T	1.000	NULL	superfamily_PX,HMMPfam_zf-CCHC,HMMSmart_ZnF_C2HC	-	no_errors	
