Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABI3BP	25890	genome.wustl.edu	37	3	100497193	100497220	+	Frame_Shift_Del	DEL	CTGGGTGGCAAGGGTGGGCGGCGAGTCC	CTGGGTGGCAAGGGTGGGCGGCGAGTCC	-	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	CTGGGTGGCAAGGGTGGGCGGCGAGTCC	CTGGGTGGCAAGGGTGGGCGGCGAGTCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	100497193	100497220	CTGGGTGGCAAGGGTGGGCGGCGAGTCC	-	DEL	ABI3BP	NM_015429	human	genbank	57_37b	-1	validated	frame_shift_del	c.2135_2108	p.G703fs	1.000:1.000:0.992:1.000:1.000:1.000:1.000:0.994:0.978:0.970:0.831:0.874:0.925:0.939:0.943:0.948:0.888:0.240:0.096:0.126:0.002:0.010:0.032:0.019:0.045:0.043:0.028:0.885	NULL	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	(deletion:cds_exon[100497128,100497220])	no_errors	
ACTL9	284382	genome.wustl.edu	37	19	8808096	8808096	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	8808096	8808096	G	T	SNP	ACTL9	NM_178525	human	genbank	57_37b	-1	validated	missense	c.956	p.A319D	0.947	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	HMMPfam_Actin,superfamily_Actin-like ATPase domain,HMMSmart_SM00268,PatternScan_N6_MTASE	-	no_errors	
ACY1	95	genome.wustl.edu	37	3	52023054	52023054	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	52023054	52023054	C	-	DEL	ACY1	NM_000666	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1190	p.A399fs	0.996	superfamily_SSF53187	superfamily_SSF53187,PatternScan_ARGE_DAPE_CPG2_1,HMMPfam_Peptidase_M20,PatternScan_ARGE_DAPE_CPG2_2,HMMPfam_M20_dimer,superfamily_Peptidase_M20_dimer	(deletion:cds_exon[52022927,52023091])	no_errors	
AFF4	27125	genome.wustl.edu	37	5	132228739	132228739	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	132228739	132228739	C	T	SNP	AFF4	NM_014423	human	genbank	57_37b	-1	validated	silent	c.2379	p.K793	1.000	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors	
AKD1	221264	genome.wustl.edu	37	6	109827530	109827530	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	109827530	109827530	C	G	SNP	AKD1	ENST00000424296	human	ensembl	57_37b	-1	known	missense	c.2086	p.G696R	1.000	NULL	HMMPfam_YHS,superfamily_SSF52540,HMMPfam_ADK	-	no_errors	
ALG2	85365	genome.wustl.edu	37	9	101980329	101980329	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	101980329	101980329	G	A	SNP	ALG2	NM_033087	human	genbank	57_37b	-1	reviewed	missense	c.1138	p.P380S	1.000	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_Glycos_transf_1	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_Glycos_transf_1	-	no_errors	
ALS2CR11	151254	genome.wustl.edu	37	2	202410298	202410298	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	202410298	202410298	G	T	SNP	ALS2CR11	NM_152525	human	genbank	57_37b	-1	validated	missense	c.1130	p.P377H	0.000	NULL	NULL	-	no_errors	
ASB2	51676	genome.wustl.edu	37	14	94420823	94420823	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	94420823	94420823	C	T	SNP	ASB2	NM_016150	human	genbank	57_37b	-1	reviewed	silent	c.174	p.A58	0.322	HMMSmart_SM00248,superfamily_Ankyrin repeat	HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ank,PatternScan_ODR_DC_2_1,PatternScan_C_TYPE_LECTIN_1,HMMSmart_SM00253,HMMPfam_SOCS_box	-	no_errors	
ASB7	140460	genome.wustl.edu	37	15	101169774	101169774	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	101169774	101169774	A	G	SNP	ASB7	NM_198243	human	genbank	57_37b	+1	reviewed	missense	c.344	p.N115S	1.000	superfamily_Ankyrin repeat,HMMPfam_Ank	HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00253,HMMPfam_SOCS_box	-	no_errors	
BAZ1A	11177	genome.wustl.edu	37	14	35243682	35243682	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	35243682	35243682	C	G	SNP	BAZ1A	NM_013448	human	genbank	57_37b	-1	validated	missense	c.2848	p.D950H	0.994	NULL	HMMPfam_WAC_Acf1_DNA_bd,HMMPfam_DDT,HMMSmart_SM00571,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors	
C12orf35	55196	genome.wustl.edu	37	12	32137221	32137221	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	32137221	32137221	C	G	SNP	C12orf35	NM_018169	human	genbank	57_37b	+1	validated	nonsense	c.3332	p.S1111*	0.584	NULL	NULL	-	no_errors	
C14orf21	161424	genome.wustl.edu	37	14	24769849	24769850	+	In_Frame_Ins	INS	-	-	GAG	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	24769849	24769850	-	GAG	INS	C14orf21	NM_174913	human	genbank	57_37b	+1	provisional	in_frame_ins	c.483_484	p.165in_frame_insE	0.000:0.015	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_PUF,HMMSmart_Pumilio	-	no_errors	
C20orf12	55184	genome.wustl.edu	37	20	18446022	18446022	+	Splice_Site	SNP	C	C	A	rs74875927	byCluster;byFrequency;by1000genomes	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	18446022	18446022	C	A	SNP	C20orf12	NM_001099407	human	genbank	57_37b	-1	validated	splice_site	c.1-1	e1-1	0.000	-	-	-		
C20orf186	149954	genome.wustl.edu	37	20	31685561	31685561	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	31685561	31685561	G	A	SNP	C20orf186	NM_182519	human	genbank	57_37b	+1	validated	missense	c.1537	p.D513N	0.912	superfamily_Bactericidal permeability-increasing protein BPI,HMMSmart_SM00329,HMMPfam_LBP_BPI_CETP_C	HMMSmart_SM00328,HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal permeability-increasing protein BPI,HMMSmart_SM00329,HMMPfam_LBP_BPI_CETP_C	-	no_errors	
C4orf31	79625	genome.wustl.edu	37	4	121958353	121958353	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	121958353	121958353	G	A	SNP	C4orf31	NM_024574	human	genbank	57_37b	-1	validated	missense	c.773	p.P258L	0.994	superfamily_FN_III-like,HMMSmart_FN3	superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_DUF2369	-	no_errors	
C6orf138	442213	genome.wustl.edu	37	6	47847116	47847116	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	47847116	47847116	T	C	SNP	C6orf138	NM_001013732	human	genbank	57_37b	-1	validated	silent	c.1413	p.G471	0.969	HMMPfam_Patched	HMMPfam_Patched,superfamily_SSF82866	-	no_errors	
CARD6	84674	genome.wustl.edu	37	5	40843565	40843565	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	40843565	40843565	A	G	SNP	CARD6	NM_032587	human	genbank	57_37b	+1	reviewed	missense	c.595	p.R199G	0.793	NULL	superfamily_DEATH_like,HMMPfam_CARD	-	no_errors	
CCDC102B	79839	genome.wustl.edu	37	18	66721311	66721311	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	66721311	66721311	G	A	SNP	CCDC102B	NM_001093729	human	genbank	57_37b	+1	validated	silent	c.1479	p.L493	0.994	NULL	NULL	-	no_errors	
CCDC144A	9720	genome.wustl.edu	37	17	16638380	16638380	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	16638380	16638380	C	G	SNP	CCDC144A	NM_014695	human	genbank	57_37b	+1	provisional	missense	c.2795	p.T932R	1.000	NULL	NULL	-	no_errors	
CFP	5199	genome.wustl.edu	37	X	47485756	47485756	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	47485756	47485756	C	T	SNP	CFP	NM_001145252	human	genbank	57_37b	-1	reviewed	missense	c.1103	p.R368Q	0.499	superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1	superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1	-	no_errors	
COL19A1	1310	genome.wustl.edu	37	6	70637830	70637830	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	70637830	70637830	A	T	SNP	COL19A1	NM_001858	human	genbank	57_37b	+1	reviewed	missense	c.296	p.E99V	1.000	HMMSmart_TSPN,superfamily_ConA_like_lec_gl	HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMPfam_Collagen	-	no_errors	
CYP26B1	56603	genome.wustl.edu	37	2	72359509	72359509	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	72359509	72359509	G	C	SNP	CYP26B1	NM_019885	human	genbank	57_37b	-1	reviewed	missense	c.1386	p.S462R	1.000	superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors	
DBH	1621	genome.wustl.edu	37	9	136507375	136507375	+	Missense_Mutation	SNP	G	A	A	rs76819676	byCluster;by1000genomes	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	136507375	136507375	G	A	SNP	DBH	NM_000787	human	genbank	57_37b	+1	reviewed	missense	c.533	p.R178Q	0.000	HMMSmart_DoH	HMMSmart_DoH,HMMPfam_DOMON,superfamily_PHM_PNGase_F,HMMPfam_Cu2_monooxygen,PatternScan_CU2_MONOOXYGENASE_1,HMMPfam_Cu2_monoox_C,PatternScan_CU2_MONOOXYGENASE_2	-		
DNA2	1763	genome.wustl.edu	37	10	70231738	70231738	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	70231738	70231738	C	T	SNP	DNA2	NM_001080449	human	genbank	57_37b	-1	provisional	missense	c.142	p.V48I	0.000	NULL	HMMPfam_Dna2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
ENSG00000207858	0	genome.wustl.edu	37	13	90883513	90883513	+	RNA	SNP	G	G	T	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	90883513	90883513	G	T	SNP	ENSG00000207858	ENST00000385123	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.112	-	-	-	no_errors	
ENSG00000235517	0	genome.wustl.edu	37	8	125877563	125877563	+	Missense_Mutation	SNP	T	T	C	rs13282575	byCluster	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	125877563	125877563	T	C	SNP	ENSG00000235517	ENST00000422573	human	ensembl	57_37b	-1	known	missense	c.145	p.K49E	0.001	NULL	NULL	-		
ENSG00000247007	0	genome.wustl.edu	37	13	113408838	113408839	+	RNA	INS	-	-	T	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	113408838	113408839	-	T	INS	ENSG00000247007	ENST00000500804	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.001:0.002	-	-	-	no_errors	
ENSG00000247469	0	genome.wustl.edu	37	8	37720299	37720299	+	RNA	DEL	G	G	-	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	37720299	37720299	G	-	DEL	ENSG00000247469	ENST00000502122	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.016	-	-	(deletion:rna[37717879,37721222])	no_errors	
FAM65C	140876	genome.wustl.edu	37	20	49221293	49221293	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	49221293	49221293	G	T	SNP	FAM65C	NM_080829	human	genbank	57_37b	-1	predicted	missense	c.963	p.S321R	0.952	NULL	NULL	-	no_errors	
FAT3	120114	genome.wustl.edu	37	11	92623767	92623767	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	92623767	92623767	C	T	SNP	FAT3	NM_001008781	human	genbank	57_37b	+1	validated	missense	c.13162	p.R4388W	0.950	NULL	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	-	no_errors	
FZD3	7976	genome.wustl.edu	37	8	28409124	28409124	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	28409124	28409124	C	T	SNP	FZD3	NM_017412	human	genbank	57_37b	+1	reviewed	missense	c.1409	p.T470I	1.000	HMMPfam_Frizzled	HMMPfam_Fz,superfamily_Frizzled cysteine-rich domain,HMMSmart_SM00063,HMMPfam_Frizzled	-	no_errors	
GOLGA1	2800	genome.wustl.edu	37	9	127700866	127700866	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	127700866	127700866	C	G	SNP	GOLGA1	NM_002077	human	genbank	57_37b	-1	reviewed	missense	c.125	p.G42A	1.000	NULL	superfamily_Prefoldin,HMMPfam_GRIP,HMMSmart_SM00755	-	no_errors	
HERC1	8925	genome.wustl.edu	37	15	64050494	64050494	+	Missense_Mutation	SNP	A	A	C	rs35163901	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	64050494	64050494	A	C	SNP	HERC1	NM_003922	human	genbank	57_37b	-1	reviewed	missense	c.1101	p.I367M	0.996	NULL	superfamily_RCC1/BLIP-II,HMMPfam_RCC1,PatternScan_RCC1_2,HMMSmart_SM00449,HMMPfam_SPRY,PatternScan_PHOSPHOPANTETHEINE,HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,PatternScan_ARGINASE_2,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-		
HRNR	388697	genome.wustl.edu	37	1	152185557	152185557	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152185557	152185557	G	A	SNP	HRNR	NM_001009931	human	genbank	57_37b	-1	validated	nonsense	c.8548	p.Q2850*	0.000	NULL	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_SVS_QK	-	no_errors	
HSPA12A	259217	genome.wustl.edu	37	10	118439273	118439273	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	118439273	118439273	C	T	SNP	HSPA12A	NM_025015	human	genbank	57_37b	-1	validated	splice_site	c.1028-1	e10-1	1.000	-	-	-	no_errors	
ITK	3702	genome.wustl.edu	37	5	156635917	156635917	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	156635917	156635917	G	A	SNP	ITK	NM_005546	human	genbank	57_37b	+1	reviewed	silent	c.156	p.K52	1.000	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00107,HMMPfam_BTK,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
KCNT2	343450	genome.wustl.edu	37	1	196227573	196227573	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	196227573	196227573	C	A	SNP	KCNT2	NM_198503	human	genbank	57_37b	-1	validated	nonsense	c.2962	p.E988*	0.999	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_BK_channel_a	-	no_errors	
KIAA1586	57691	genome.wustl.edu	37	6	56919137	56919137	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	56919137	56919137	A	C	SNP	KIAA1586	NM_020931	human	genbank	57_37b	+1	validated	missense	c.1840	p.M614L	0.004	NULL	NULL	-	no_errors	
KIR3DL2	3812	genome.wustl.edu	37	19	55363521	55363521	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55363521	55363521	C	T	SNP	KIR3DL2	NM_006737	human	genbank	57_37b	+1	reviewed	missense	c.139	p.L47F	0.004	superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig	superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig	-	no_errors	
LOC100287686	0	genome.wustl.edu	37	1	167042712	167042712	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	167042712	167042712	T	C	SNP	LOC100287686	XM_002342149	human	genbank	57_37b	+1	model	missense	c.88	p.S30P	0.000	NULL	NULL	-	no_errors	
LOC440300	440300	genome.wustl.edu	37	15	84859462	84859462	+	RNA	SNP	A	A	G	rs76773663	byFrequency	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	84859462	84859462	A	G	SNP	LOC440300	XR_078504	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.003	-	-	-		
MAGEE1	57692	genome.wustl.edu	37	X	75648610	75648610	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	75648610	75648610	T	C	SNP	MAGEE1	NM_020932	human	genbank	57_37b	+1	validated	missense	c.287	p.I96T	0.000	NULL	HMMPfam_MAGE	-	no_errors	
MAP1A	4130	genome.wustl.edu	37	15	43813802	43813802	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	43813802	43813802	C	A	SNP	MAP1A	NM_002373	human	genbank	57_37b	+1	reviewed	missense	c.131	p.P44Q	1.000	NULL	superfamily_Metallo-hydrolase/oxidoreductase	-	no_errors	
MCM3	4172	genome.wustl.edu	37	6	52129521	52129521	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	52129521	52129521	G	T	SNP	MCM3	ENST00000340349	human	ensembl	57_37b	-1	known	missense	c.934	p.H312N	0.987	NULL	HMMPfam_MCM,HMMSmart_SM00350,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
MIIP	60672	genome.wustl.edu	37	1	12081867	12081867	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	12081867	12081867	G	A	SNP	MIIP	NM_021933	human	genbank	57_37b	+1	validated	silent	c.84	p.V28	0.448	NULL	NULL	-	no_errors	
MX2	4600	genome.wustl.edu	37	21	42780107	42780123	+	Frame_Shift_Del	DEL	CTCACTCAGGCGCGACA	CTCACTCAGGCGCGACA	-	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	CTCACTCAGGCGCGACA	CTCACTCAGGCGCGACA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	42780107	42780123	CTCACTCAGGCGCGACA	-	DEL	MX2	NM_002463	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.2095_2111	p.L699fs	0.980:0.929:0.001:0.000:0.000:0.000:0.042:0.280:0.354:0.514:0.505:0.000:0.009:0.008:0.000:0.000:0.000	HMMPfam_GED,HMMSmart_GED	HMMSmart_DYNc,superfamily_SSF52540,HMMPfam_Dynamin_N,PatternScan_DYNAMIN,HMMPfam_Dynamin_M,HMMPfam_GED,HMMSmart_GED	(deletion:cds_exon[42779918,42780160])	no_errors	
MYPN	84665	genome.wustl.edu	37	10	69966541	69966560	+	Frame_Shift_Del	DEL	CAACAGGGTATGCCTGCCTT	CAACAGGGTATGCCTGCCTT	-	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	CAACAGGGTATGCCTGCCTT	CAACAGGGTATGCCTGCCTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	69966541	69966560	CAACAGGGTATGCCTGCCTT	-	DEL	MYPN	NM_032578	human	genbank	57_37b	+1	validated	frame_shift_del	c.3674_3693	p.T1226fs	0.998:0.988:1.000:1.000:0.978:1.000:1.000:0.009:0.999:1.000:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,PatternScan_ER_TARGET	(deletion:cds_exon[69966527,69966660])	no_errors	
NCF2	4688	genome.wustl.edu	37	1	183556064	183556064	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	183556064	183556064	A	C	SNP	NCF2	NM_000433	human	genbank	57_37b	-1	reviewed	missense	c.223	p.F75V	1.000	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SSF54277,HMMPfam_PB1,HMMSmart_PB1	-	no_errors	
NF1	4763	genome.wustl.edu	37	17	29496956	29496958	+	In_Frame_Del	DEL	ATA	ATA	-	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	ATA	ATA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	29496956	29496958	ATA	-	DEL	NF1	NM_001042492	human	genbank	57_37b	+1	reviewed	in_frame_del	c.527_529	p.DI176in_frame_delV	1.000:1.000:1.000	NULL	HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMSmart_SM00516	(deletion:cds_exon[29496909,29497015])	no_errors	
NF1	4763	genome.wustl.edu	37	17	29496963	29496964	+	Frame_Shift_Del	DEL	AT	AT	-	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	29496963	29496964	AT	-	DEL	NF1	NM_001042492	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.534_535	p.E178fs	1.000:1.000	NULL	HMMSmart_SM00516,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP	(deletion:cds_exon[29496909,29497015])	no_errors	
NLRP11	204801	genome.wustl.edu	37	19	56320649	56320649	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	56320649	56320649	T	C	SNP	NLRP11	NM_145007	human	genbank	57_37b	-1	validated	missense	c.1327	p.K443E	0.000	NULL	superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,PatternScan_CU2_MONOOXYGENASE_1,superfamily_RNI-like,HMMSmart_SM00368	-	no_errors	
NRXN3	9369	genome.wustl.edu	37	14	79423678	79423678	+	Nonsense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	79423678	79423678	T	G	SNP	NRXN3	NM_004796	human	genbank	57_37b	+1	reviewed	nonsense	c.1250	p.L417*	0.956	superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2	superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2,HMMSmart_LamG,HMMSmart_EGF,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,HMMSmart_4.1m	-	no_errors	
ODF2	4957	genome.wustl.edu	37	9	131246284	131246284	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	131246284	131246284	A	G	SNP	ODF2	NM_002540	human	genbank	57_37b	+1	reviewed	missense	c.983	p.Q328R	1.000	NULL	NULL	-	no_errors	
OR4X1	390113	genome.wustl.edu	37	11	48286093	48286093	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	48286093	48286093	C	T	SNP	OR4X1	NM_001004726	human	genbank	57_37b	+1	provisional	silent	c.681	p.N227	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR52K2	119774	genome.wustl.edu	37	11	4471319	4471319	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	4471319	4471319	C	G	SNP	OR52K2	NM_001005172	human	genbank	57_37b	+1	validated	missense	c.750	p.I250M	0.678	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
ORM1	5004	genome.wustl.edu	37	9	117085806	117085815	+	Frame_Shift_Del	DEL	CCTGCATGCG	CCTGCATGCG	-	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	CCTGCATGCG	CCTGCATGCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	117085806	117085815	CCTGCATGCG	-	DEL	ORM1	ENST00000438927	human	ensembl	57_37b	+1	known	frame_shift_del	c.393_402	p.L132fs	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	NULL	NULL	(deletion:cds_exon[117085414,117085998])	no_errors	
PACS1	55690	genome.wustl.edu	37	11	65998376	65998376	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	65998376	65998376	A	T	SNP	PACS1	NM_018026	human	genbank	57_37b	+1	reviewed	missense	c.1591	p.S531C	1.000	NULL	HMMPfam_Pacs-1	-	no_errors	
PCDHAC1	56135	genome.wustl.edu	37	5	140306692	140306692	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140306692	140306692	G	-	DEL	PCDHAC1	NM_018898	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.215	p.S72fs	0.809	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	(deletion:cds_exon[140306478,140308910])	no_errors	
PCDHGB4	8641	genome.wustl.edu	37	5	140768682	140768682	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140768682	140768682	G	T	SNP	PCDHGB4	NM_003736	human	genbank	57_37b	+1	reviewed	nonsense	c.1231	p.E411*	0.992	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PLEKHG3	26030	genome.wustl.edu	37	14	65207860	65207860	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	65207860	65207860	A	G	SNP	PLEKHG3	NM_015549	human	genbank	57_37b	+1	validated	missense	c.1457	p.E486G	0.388	NULL	superfamily_DH-domain,HMMPfam_RhoGEF,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors	
PLOD1	5351	genome.wustl.edu	37	1	12004663	12004663	+	Missense_Mutation	SNP	G	A	A	rs112799470	by1000genomes	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	12004663	12004663	G	A	SNP	PLOD1	ENST00000376369	human	ensembl	57_37b	+1	known	missense	c.161	p.R54Q	0.000	NULL	HMMSmart_P4Hc,HMMPfam_2OG-FeII_Oxy,PatternScan_LYS_HYDROXYLASE	-		
PTPRN2	5799	genome.wustl.edu	37	7	157370811	157370811	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	157370811	157370811	C	T	SNP	PTPRN2	NM_002847	human	genbank	57_37b	-1	reviewed	missense	c.2518	p.V840M	1.000	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
RBL1	5933	genome.wustl.edu	37	20	35651110	35651110	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	35651110	35651110	T	C	SNP	RBL1	NM_002895	human	genbank	57_37b	-1	reviewed	silent	c.2502	p.L834	0.713	HMMPfam_RB_B,superfamily_Cyclin-like,HMMSmart_SM00385	HMMPfam_RB_A,superfamily_Cyclin-like,HMMPfam_RB_B,HMMSmart_SM00385	-	no_errors	
RFPL3	10738	genome.wustl.edu	37	22	32756346	32756346	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	32756346	32756346	G	A	SNP	RFPL3	NM_001098535	human	genbank	57_37b	+1	validated	missense	c.481	p.E161K	0.011	HMMSmart_PRY	PatternScan_ZF_RING_1,superfamily_SSF57850,HMMPfam_zf-C3HC4,HMMSmart_RING,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY	-	no_errors	
RGAG1	57529	genome.wustl.edu	37	X	109697417	109697417	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	109697417	109697417	C	A	SNP	RGAG1	NM_020769	human	genbank	57_37b	+1	validated	missense	c.3572	p.S1191Y	1.000	NULL	HMMPfam_Retrotrans_gag	-	no_errors	
RGS1	5996	genome.wustl.edu	37	1	192548335	192548335	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	192548335	192548335	T	G	SNP	RGS1	NM_002922	human	genbank	57_37b	+1	reviewed	missense	c.513	p.F171L	0.998	superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315	superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315	-	no_errors	
SEC1	0	genome.wustl.edu	37	19	49184178	49184178	+	RNA	SNP	C	C	G	rs8101298	byCluster;byFrequency;by1000genomes	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49184178	49184178	C	G	SNP	SEC1	NR_004401	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.956	-	-	-		
SELE	6401	genome.wustl.edu	37	1	169702097	169702097	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	169702097	169702097	G	C	SNP	SELE	NM_000450	human	genbank	57_37b	-1	reviewed	missense	c.80	p.S27C	0.843	HMMSmart_SM00034,superfamily_C-type lectin-like	HMMSmart_SM00034,superfamily_C-type lectin-like,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors	
SERPINA11	256394	genome.wustl.edu	37	14	94914994	94915020	+	In_Frame_Del	DEL	GCTGATGCCTGGGGGGTTGAGGCCCCT	GCTGATGCCTGGGGGGTTGAGGCCCCT	-	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	GCTGATGCCTGGGGGGTTGAGGCCCCT	GCTGATGCCTGGGGGGTTGAGGCCCCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	94914994	94915020	GCTGATGCCTGGGGGGTTGAGGCCCCT	-	DEL	SERPINA11	NM_001080451	human	genbank	57_37b	-1	provisional	in_frame_del	c.118_92	p.QGPQPPRHQ31in_frame_del	0.000:0.001:0.006:0.005:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.027:0.003:0.000	superfamily_Prot_inh_serpin	PatternScan_SERPIN,superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN	(deletion:cds_exon[94914469,94915111])	no_errors	
SF1	7536	genome.wustl.edu	37	11	64536769	64536769	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64536769	64536769	G	C	SNP	SF1	NM_004630	human	genbank	57_37b	-1	validated	missense	c.705	p.D235E	1.000	superfamily_Eukaryotic type KH-domain (KH-domain type I)	HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMPfam_KH_1,HMMPfam_zf-CCHC,HMMSmart_SM00343	-	no_errors	
SLIT2	9353	genome.wustl.edu	37	4	20598070	20598070	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	20598070	20598070	T	C	SNP	SLIT2	NM_004787	human	genbank	57_37b	+1	provisional	missense	c.3353	p.V1118A	1.000	NULL	superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,HMMSmart_SM00365,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMSmart_SM00274,PatternScan_ASX_HYDROXYL,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00041,PatternScan_CTCK_1	-	no_errors	
SNORD79	0	genome.wustl.edu	37	1	173834509	173834509	+	RNA	SNP	C	C	G	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	173834509	173834509	C	G	SNP	SNORD79	NR_003939	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	0.022	-	-	-	no_errors	
SNX32	254122	genome.wustl.edu	37	11	65617722	65617722	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	65617722	65617722	G	C	SNP	SNX32	NM_152760	human	genbank	57_37b	+1	validated	missense	c.354	p.K118N	0.998	superfamily_PX domain,HMMPfam_PX	PatternScan_PHOSPHOPANTETHEINE,superfamily_PX domain,HMMPfam_PX,HMMPfam_Vps5	-	no_errors	
TCHH	7062	genome.wustl.edu	37	1	152084837	152084837	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152084837	152084837	G	T	SNP	TCHH	NM_007113	human	genbank	57_37b	-1	provisional	missense	c.856	p.L286M	0.011	NULL	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	rs28934578	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578406	7578406	C	T	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.524	p.R175H	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-		
TRNAU1AP	54952	genome.wustl.edu	37	1	28904895	28904896	+	RNA	INS	-	-	ACTT	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	28904895	28904896	-	ACTT	INS	TRNAU1AP	NR_003109	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.005:0.001	-	-	-	no_errors	
TROAP	10024	genome.wustl.edu	37	12	49717812	49717812	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	49717812	49717812	C	T	SNP	TROAP	NM_005480	human	genbank	57_37b	+1	validated	missense	c.329	p.A110V	0.007	NULL	NULL	-	no_errors	
TRPV2	51393	genome.wustl.edu	37	17	16326990	16326990	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	16326990	16326990	C	A	SNP	TRPV2	NM_016113	human	genbank	57_37b	+1	reviewed	missense	c.833	p.A278D	0.025	superfamily_ANK	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK,HMMPfam_Ion_trans	-	no_errors	
TSR1	55720	genome.wustl.edu	37	17	2239717	2239717	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	2239717	2239717	G	T	SNP	TSR1	NM_018128	human	genbank	57_37b	-1	validated	missense	c.5	p.A2E	0.998	NULL	HMMPfam_AARP2CN,HMMSmart_AARP2CN,HMMPfam_DUF663	-	no_errors	
TTN	7273	genome.wustl.edu	37	2	179640141	179640141	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179640141	179640141	C	A	SNP	TTN	NM_133379	human	genbank	57_37b	-1	reviewed	missense	c.6450	p.M2150I	1.000	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_Titin_Z,HMMPfam_ig,PatternScan_IG_MHC,PatternScan_THIOL_PROTEASE_HIS	-	no_errors	
USP1	7398	genome.wustl.edu	37	1	62910521	62910521	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	62910521	62910521	A	G	SNP	USP1	NM_001017415	human	genbank	57_37b	+1	reviewed	missense	c.670	p.K224E	0.954	superfamily_SSF54001,HMMPfam_UCH	superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors	
USPL1	10208	genome.wustl.edu	37	13	31216765	31216781	+	Frame_Shift_Del	DEL	GTGATATGGAAAGCCCT	GTGATATGGAAAGCCCT	-	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	GTGATATGGAAAGCCCT	GTGATATGGAAAGCCCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	31216765	31216781	GTGATATGGAAAGCCCT	-	DEL	USPL1	NM_005800	human	genbank	57_37b	+1	validated	frame_shift_del	c.983_999	p.D329fs	1.000:1.000:1.000:0.998:0.888:0.990:0.997:1.000:1.000:1.000:1.000:1.000:1.000:0.946:0.998:0.997:0.835	NULL	NULL	(deletion:cds_exon[31216765,31216894])	no_errors	
WSCD1	23302	genome.wustl.edu	37	17	6023829	6023829	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	6023829	6023829	G	C	SNP	WSCD1	NM_015253	human	genbank	57_37b	+1	validated	missense	c.1576	p.G526R	1.000	superfamily_SSF52540	HMMSmart_WSC,HMMPfam_WSC,superfamily_SSF52540	-	no_errors	
XPOT	11260	genome.wustl.edu	37	12	64815088	64815088	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	64815088	64815088	G	C	SNP	XPOT	NM_007235	human	genbank	57_37b	+1	reviewed	missense	c.917	p.W306S	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_Xpo1	-	no_errors	
ZNF224	7767	genome.wustl.edu	37	19	44611903	44611903	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	44611903	44611903	C	T	SNP	ZNF224	NM_013398	human	genbank	57_37b	+1	validated	silent	c.1590	p.H530	0.125	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF525	170958	genome.wustl.edu	37	19	53887514	53887514	+	RNA	SNP	A	A	G	rs11879156	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-AN-A0AL-01	TCGA-AN-A0AL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	53887514	53887514	A	G	SNP	ZNF525	NR_003699	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.036	-	-	-		
