Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
APPL2	55198	genome.wustl.edu	37	12	105570747	105570747	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	105570747	105570747	C	G	SNP	APPL2	NM_018171	human	genbank	57_37b	-1	validated	missense	c.1719	p.K573N	1.000	superfamily_SSF50729,HMMPfam_PID	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_PID	-	no_errors	
CAMSAP1	157922	genome.wustl.edu	37	9	138714311	138714311	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	138714311	138714311	A	T	SNP	CAMSAP1	NM_015447	human	genbank	57_37b	-1	validated	silent	c.2196	p.T732	0.000	NULL	superfamily_Calponin-homology domain CH-domain,superfamily_PRC-barrel domain,HMMPfam_DUF1781	-	no_errors	
CAPN1	823	genome.wustl.edu	37	11	64953422	64953422	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64953422	64953422	T	C	SNP	CAPN1	NM_005186	human	genbank	57_37b	+1	reviewed	missense	c.491	p.V164A	1.000	superfamily_SSF54001,HMMSmart_CysPc,HMMPfam_Peptidase_C2	PatternScan_THIOL_PROTEASE_HIS,PatternScan_THIOL_PROTEASE_ASN,superfamily_SSF54001,HMMSmart_CysPc,HMMPfam_Peptidase_C2,PatternScan_THIOL_PROTEASE_CYS,HMMPfam_Calpain_III,HMMSmart_calpain_III,superfamily_Peptidase_C2,superfamily_SSF47473,HMMSmart_EFh,PatternScan_EF_HAND_1	-	no_errors	
CCDC120	90060	genome.wustl.edu	37	X	48924824	48924824	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	48924824	48924824	C	T	SNP	CCDC120	NM_033626	human	genbank	57_37b	+1	reviewed	missense	c.1069	p.R357C	1.000	NULL	NULL	-	no_errors	
CD2	914	genome.wustl.edu	37	1	117311091	117311091	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	117311091	117311091	G	T	SNP	CD2	NM_001767	human	genbank	57_37b	+1	validated	nonsense	c.742	p.E248*	0.823	NULL	HMMPfam_V-set,superfamily_Immunoglobulin,HMMPfam_C2-set	-	no_errors	
CHD1L	9557	genome.wustl.edu	37	1	146724328	146724328	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	146724328	146724328	C	T	SNP	CHD1L	NM_004284	human	genbank	57_37b	+1	validated	missense	c.178	p.R60C	0.777	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SNF2_N	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors	
CSNK1A1L	122011	genome.wustl.edu	37	13	37678520	37678520	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	37678520	37678520	A	G	SNP	CSNK1A1L	NM_145203	human	genbank	57_37b	-1	validated	missense	c.874	p.Y292H	1.000	superfamily_Kinase_like	superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
CYP24A1	1591	genome.wustl.edu	37	20	52789446	52789446	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	52789446	52789446	A	T	SNP	CYP24A1	NM_000782	human	genbank	57_37b	-1	reviewed	splice_site	c.449+2	e2+2	1.000	-	-	-	no_errors	
ELL2	22936	genome.wustl.edu	37	5	95234058	95234064	+	Frame_Shift_Del	DEL	CCTTATG	CCTTATG	-	novel	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	CCTTATG	CCTTATG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	95234058	95234064	CCTTATG	-	DEL	ELL2	NM_012081	human	genbank	57_37b	-1	validated	frame_shift_del	c.1411_1405	p.H469fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	HMMPfam_ELL,HMMPfam_Occludin_ELL	(deletion:cds_exon[95233944,95234514])	no_errors	
ENSG00000136149	0	genome.wustl.edu	37	13	55015392	55015392	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	55015392	55015392	G	A	SNP	ENSG00000136149	ENST00000334406	human	ensembl	57_37b	-1	known	missense	c.59	p.A20V	0.995	HMMPfam_Ribosomal_L13,superfamily_Ribosomal_L13	HMMPfam_Ribosomal_L13,superfamily_Ribosomal_L13	-	no_errors	
FAM86D	692099	genome.wustl.edu	37	3	75471725	75471725	+	RNA	SNP	A	A	G	rs58659934	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	75471725	75471725	A	G	SNP	FAM86D	NR_024241	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-		
FAT1	2195	genome.wustl.edu	37	4	187524066	187524066	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	187524066	187524066	G	A	SNP	FAT1	NM_005245	human	genbank	57_37b	-1	reviewed	nonsense	c.11473	p.Q3825*	0.685	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00181,superfamily_EGF/Laminin	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_CADHERIN_1,HMMSmart_SM00181,superfamily_EGF/Laminin,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL	-	no_errors	
GTF2IRD2	84163	genome.wustl.edu	37	7	74234113	74234113	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	74234113	74234113	T	C	SNP	GTF2IRD2	NM_173537	human	genbank	57_37b	-1	validated	missense	c.641	p.N214S	0.131	NULL	HMMPfam_GTF2I	-	no_errors	
HIST2H2AC	8338	genome.wustl.edu	37	1	149858866	149858866	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	149858866	149858866	C	G	SNP	HIST2H2AC	NM_003517	human	genbank	57_37b	+1	reviewed	silent	c.342	p.A114	0.990	superfamily_Histone-fold,HMMSmart_SM00414	superfamily_Histone-fold,HMMSmart_SM00414,HMMPfam_Histone,PatternScan_HISTONE_H2A	-	no_errors	
HSD17B4	3295	genome.wustl.edu	37	5	118860980	118860980	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	118860980	118860980	G	-	DEL	HSD17B4	NM_000414	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1573	p.G525fs	1.000	HMMPfam_MaoC_dehydratas,superfamily_SSF54637	superfamily_NAD(P)-bd,HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_SSF54637,HMMPfam_MaoC_dehydratas,superfamily_SCP2,HMMPfam_SCP2	(deletion:cds_exon[118860911,118860980])	no_errors	
KIAA0947	23379	genome.wustl.edu	37	5	5457514	5457514	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	5457514	5457514	G	A	SNP	KIAA0947	NM_015325	human	genbank	57_37b	+1	validated	missense	c.761	p.G254D	0.000	NULL	NULL	-	no_errors	
KRTAP13-4	284827	genome.wustl.edu	37	21	31802736	31802736	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	31802736	31802736	A	G	SNP	KRTAP13-4	NM_181600	human	genbank	57_37b	+1	provisional	missense	c.143	p.Y48C	0.025	HMMPfam_PMG	HMMPfam_PMG	-	no_errors	
LBR	3930	genome.wustl.edu	37	1	225592382	225592382	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	225592382	225592382	C	T	SNP	LBR	NM_002296	human	genbank	57_37b	-1	reviewed	missense	c.1510	p.A504T	1.000	HMMPfam_ERG4_ERG24	HMMPfam_LBR_tudor,HMMSmart_TUDOR,HMMPfam_ERG4_ERG24,PatternScan_STEROL_REDUCT_1,PatternScan_STEROL_REDUCT_2	-	no_errors	
LOC399783	399783	genome.wustl.edu	37	10	79493277	79493277	+	RNA	SNP	C	C	T	rs117748776	by1000genomes	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	79493277	79493277	C	T	SNP	LOC399783	XR_078426	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.994	-	-	-		
MLL3	58508	genome.wustl.edu	37	7	151845282	151845283	+	Frame_Shift_Del	DEL	GG	GG	-	novel	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	GG	GG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	151845282	151845283	GG	-	DEL	MLL3	NM_170606	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.13730_13729	p.P4577fs	1.000:1.000	HMMPfam_FYRN,HMMSmart_SM00541	PatternScan_HMGI_Y,HMMPfam_AT_hook,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,HMMSmart_SM00184,PatternScan_ZF_PHD_1,PatternScan_ATPASE_ALPHA_BETA,HMMSmart_SM00398,HMMPfam_HMG_box,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	(deletion:cds_exon[151845118,151846237])	no_errors	
NCR2	9436	genome.wustl.edu	37	6	41304105	41304105	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	41304105	41304105	C	A	SNP	NCR2	NM_004828	human	genbank	57_37b	+1	validated	silent	c.333	p.I111	0.001	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_V-set	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_V-set	-	no_errors	
OR4K14	122740	genome.wustl.edu	37	14	20482985	20482985	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	20482985	20482985	C	G	SNP	OR4K14	NM_001004712	human	genbank	57_37b	-1	provisional	missense	c.368	p.R123T	0.999	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1633	p.E545K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-		
RTN4RL1	146760	genome.wustl.edu	37	17	1839853	1839853	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	1839853	1839853	C	T	SNP	RTN4RL1	NM_178568	human	genbank	57_37b	-1	validated	silent	c.1263	p.S421	0.858	NULL	superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082	-	no_errors	
SCN8A	6334	genome.wustl.edu	37	12	52115519	52115519	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	52115519	52115519	G	A	SNP	SCN8A	NM_014191	human	genbank	57_37b	+1	validated	missense	c.1825	p.E609K	0.999	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,PatternScan_ODR_DC_2_1,HMMSmart_SM00015,HMMPfam_IQ	-	no_errors	
SH3BP1	23616	genome.wustl.edu	37	22	38037425	38037425	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	38037425	38037425	C	G	SNP	SH3BP1	NM_018957	human	genbank	57_37b	+1	validated	missense	c.147	p.I49M	0.940	HMMSmart_SM00721,HMMPfam_BAR	HMMSmart_SM00721,HMMPfam_BAR,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors	
SHARPIN	81858	genome.wustl.edu	37	8	145154196	145154196	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	145154196	145154196	A	C	SNP	SHARPIN	NM_030974	human	genbank	57_37b	-1	validated	silent	c.906	p.A302	0.896	superfamily_Ubiquitin-like	superfamily_Ubiquitin-like,superfamily_NZF domain,HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1	-	no_errors	
SLC1A4	6509	genome.wustl.edu	37	2	65243809	65243809	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	65243809	65243809	T	C	SNP	SLC1A4	NM_003038	human	genbank	57_37b	+1	validated	splice_site	c.1034+2	e5+2	1.000	-	-	-	no_errors	
SNRNP200	23020	genome.wustl.edu	37	2	96956114	96956114	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	96956114	96956114	G	A	SNP	SNRNP200	NM_014014	human	genbank	57_37b	-1	reviewed	missense	c.2692	p.P898S	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMSmart_SM00611,HMMPfam_Sec63	-	no_errors	
TACC1	6867	genome.wustl.edu	37	8	38684873	38684873	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	38684873	38684873	C	T	SNP	TACC1	NM_006283	human	genbank	57_37b	+1	reviewed	missense	c.1640	p.A547V	0.998	NULL	HMMPfam_TACC	-	no_errors	
TMEM47	83604	genome.wustl.edu	37	X	34674970	34674970	+	Silent	SNP	C	C	G	rs5928617	byCluster	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	34674970	34674970	C	G	SNP	TMEM47	NM_031442	human	genbank	57_37b	-1	reviewed	silent	c.177	p.R59	1.000	NULL	NULL	-		
USP15	9958	genome.wustl.edu	37	12	62784642	62784642	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	62784642	62784642	A	C	SNP	USP15	NM_006313	human	genbank	57_37b	+1	provisional	splice_site	c.1758-2	e14-2	1.000	-	-	-	no_errors	
WIPF3	644150	genome.wustl.edu	37	7	29923974	29923974	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0XP-01	TCGA-AN-A0XP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	29923974	29923974	G	A	SNP	WIPF3	ENST00000242140	human	ensembl	57_37b	+1	known	silent	c.864	p.E288	0.001	NULL	HMMPfam_WH2,HMMSmart_WH2	-	no_errors	
