Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADAMTS17	170691	genome.wustl.edu	37	15	100649205	100649205	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XT-01	TCGA-AN-A0XT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	100649205	100649205	C	T	SNP	ADAMTS17	NM_139057	human	genbank	57_37b	-1	reviewed	missense	c.2005	p.G669S	1.000	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_PLAC"	-	no_errors	
C10orf140	387640	genome.wustl.edu	37	10	21805480	21805480	+	Silent	SNP	T	T	C	rs67593372	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XT-01	TCGA-AN-A0XT-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	21805480	21805480	T	C	SNP	C10orf140	NM_207371	human	genbank	57_37b	-1	validated	silent	c.1272	p.E424	0.381	NULL	superfamily_Putative DNA-binding domain,HMMPfam_Ski_Sno,PatternScan_G_PROTEIN_RECEP_F1_1	-		
COL6A2	1292	genome.wustl.edu	37	21	47549113	47549113	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XT-01	TCGA-AN-A0XT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	47549113	47549113	C	T	SNP	COL6A2	NM_058174	human	genbank	57_37b	+1	reviewed	missense	c.2465	p.A822V	0.193	NULL	superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_Collagen	-	no_errors	
DHDH	27294	genome.wustl.edu	37	19	49438313	49438313	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0XT-01	TCGA-AN-A0XT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49438313	49438313	C	T	SNP	DHDH	NM_014475	human	genbank	57_37b	+1	reviewed	silent	c.147	p.H49	0.108	HMMPfam_GFO_IDH_MocA,superfamily_NAD(P)-bd	HMMPfam_GFO_IDH_MocA,superfamily_NAD(P)-bd,superfamily_SSF55347,HMMPfam_GFO_IDH_MocA_C	-	no_errors	
DNMT3A	1788	genome.wustl.edu	37	2	25457242	25457242	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XT-01	TCGA-AN-A0XT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	25457242	25457242	C	T	SNP	DNMT3A	NM_022552	human	genbank	57_37b	-1	reviewed	missense	c.2645	p.R882H	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP,HMMSmart_SM00293,superfamily_FYVE/PHD zinc finger,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_DNA_methylase,PatternScan_C5_MTASE_1	-	no_errors	
EIF2C3	192669	genome.wustl.edu	37	1	36509128	36509128	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0XT-01	TCGA-AN-A0XT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	36509128	36509128	C	T	SNP	EIF2C3	NM_024852	human	genbank	57_37b	+1	reviewed	silent	c.2253	p.L751	1.000	superfamily_RNaseH_fold,HMMPfam_Piwi	HMMPfam_DUF1785,superfamily_SSF101690,HMMPfam_PAZ,superfamily_RNaseH_fold,HMMPfam_Piwi	-	no_errors	
ENSG00000246385	0	genome.wustl.edu	37	19	12814794	12814794	+	RNA	SNP	C	C	T	novel	unknown	TCGA-AN-A0XT-01	TCGA-AN-A0XT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	12814794	12814794	C	T	SNP	ENSG00000246385	ENST00000500605	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.023	-	-	-	no_errors	
FAM179A	165186	genome.wustl.edu	37	2	29259479	29259479	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XT-01	TCGA-AN-A0XT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	29259479	29259479	G	A	SNP	FAM179A	NM_199280	human	genbank	57_37b	+1	validated	missense	c.2491	p.A831T	0.007	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors	
HTR5A	3361	genome.wustl.edu	37	7	154862859	154862859	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XT-01	TCGA-AN-A0XT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	154862859	154862859	G	A	SNP	HTR5A	NM_024012	human	genbank	57_37b	+1	reviewed	missense	c.250	p.V84I	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
ITGBL1	9358	genome.wustl.edu	37	13	102235608	102235608	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XT-01	TCGA-AN-A0XT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	102235608	102235608	C	T	SNP	ITGBL1	NM_004791	human	genbank	57_37b	+1	provisional	missense	c.770	p.P257L	1.000	superfamily_SSF57196	HMMPfam_EGF_2,PatternScan_INTEGRIN_BETA,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_EGF	-	no_errors	
KCNV2	169522	genome.wustl.edu	37	9	2718534	2718534	+	Silent	SNP	C	C	G	rs12237048	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XT-01	TCGA-AN-A0XT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	2718534	2718534	C	G	SNP	KCNV2	NM_133497	human	genbank	57_37b	+1	reviewed	silent	c.795	p.A265	1.000	superfamily_SSF81324	superfamily_BTB/POZ_fold,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans	-		
KDM6B	23135	genome.wustl.edu	37	17	7750178	7750186	+	In_Frame_Del	DEL	ACCACCACC	ACCACCACC	-	novel	unknown	TCGA-AN-A0XT-01	TCGA-AN-A0XT-01	ACCACCACC	ACCACCACC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7750178	7750186	ACCACCACC	-	DEL	KDM6B	NM_001080424	human	genbank	57_37b	+1	provisional	in_frame_del	c.753_761	p.PPP255in_frame_del	0.528:0.804:0.807:0.775:0.765:0.746:0.002:0.005:0.007	NULL	HMMSmart_SM00558,HMMPfam_JmjC	(deletion:cds_exon[7750137,7750334])	no_errors	
LMBR1	64327	genome.wustl.edu	37	7	156619309	156619309	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0XT-01	TCGA-AN-A0XT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	156619309	156619309	G	A	SNP	LMBR1	NM_022458	human	genbank	57_37b	-1	reviewed	silent	c.309	p.S103	1.000	HMMPfam_LMBR1	HMMPfam_LMBR1	-	no_errors	
LOC729324	729324	genome.wustl.edu	37	2	65455000	65455000	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AN-A0XT-01	TCGA-AN-A0XT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	65455000	65455000	G	A	SNP	LOC729324	XR_041499	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.004	-	-	-	no_errors	
LPAR6	10161	genome.wustl.edu	37	13	48986180	48986180	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0XT-01	TCGA-AN-A0XT-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	48986180	48986180	A	G	SNP	LPAR6	NM_005767	human	genbank	57_37b	-1	reviewed	missense	c.380	p.L127P	0.985	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
MIR1284	0	genome.wustl.edu	37	3	71591235	71591235	+	RNA	SNP	C	C	G	novel	unknown	TCGA-AN-A0XT-01	TCGA-AN-A0XT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	71591235	71591235	C	G	SNP	MIR1284	ENST00000408337	human	ensembl	57_37b	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	
POLR2F	5435	genome.wustl.edu	37	22	38349806	38349806	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0XT-01	TCGA-AN-A0XT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	38349806	38349806	C	A	SNP	POLR2F	NM_021974	human	genbank	57_37b	+1	reviewed	missense	c.12	p.N4K	1.000	superfamily_RPB6/omega subunit-like	superfamily_RPB6/omega subunit-like,HMMPfam_RNA_pol_Rpb6,PatternScan_RNA_POL_K_14KD	-	no_errors	
RPL4	6124	genome.wustl.edu	37	15	66795050	66795050	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0XT-01	TCGA-AN-A0XT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	66795050	66795050	G	A	SNP	RPL4	NM_000968	human	genbank	57_37b	-1	reviewed	silent	c.321	p.T107	0.939	superfamily_Ribosomal protein L4,HMMPfam_Ribosomal_L4	superfamily_Ribosomal protein L4,PatternScan_ALDEHYDE_DEHYDR_GLU,HMMPfam_Ribosomal_L4,PatternScan_RIBOSOMAL_L1E	-	no_errors	
SEC22A	26984	genome.wustl.edu	37	3	122990400	122990400	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XT-01	TCGA-AN-A0XT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	122990400	122990400	G	A	SNP	SEC22A	NM_012430	human	genbank	57_37b	+1	reviewed	missense	c.755	p.R252Q	1.000	NULL	superfamily_SNARE-like	-	no_errors	
TMED4	222068	genome.wustl.edu	37	7	44621754	44621754	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0XT-01	TCGA-AN-A0XT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	44621754	44621754	G	A	SNP	TMED4	NM_182547	human	genbank	57_37b	-1	provisional	silent	c.52	p.L18	0.418	NULL	HMMPfam_EMP24_GP25L	-	no_errors	
TOR3A	64222	genome.wustl.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AN-A0XT-01	TCGA-AN-A0XT-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	179051300	179051300	T	C	SNP	TOR3A	NM_022371	human	genbank	57_37b	+1	validated	missense	c.37	p.F13L	0.000	NULL	HMMPfam_Torsin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-		
TP53	7157	genome.wustl.edu	37	17	7578555	7578555	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-AN-A0XT-01	TCGA-AN-A0XT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578555	7578555	C	T	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	splice_site	c.376-1	e4-1	1.000	-	-	-	no_errors	
TREM1	54210	genome.wustl.edu	37	6	41243863	41243863	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0XT-01	TCGA-AN-A0XT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	41243863	41243863	C	T	SNP	TREM1	NM_018643	human	genbank	57_37b	-1	provisional	silent	c.705	p.*235	0.022	NULL	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409	-	no_errors	
TULP3	7289	genome.wustl.edu	37	12	3040249	3040249	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0XT-01	TCGA-AN-A0XT-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	3040249	3040249	A	G	SNP	TULP3	NM_003324	human	genbank	57_37b	+1	reviewed	missense	c.539	p.N180S	0.000	superfamily_Transcriptional factor tubby C-terminal domain	superfamily_Transcriptional factor tubby C-terminal domain,HMMPfam_Tub,PatternScan_TUB_1,PatternScan_TUB_2	-	no_errors	
