Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADAMTS4	9507	genome.wustl.edu	37	1	161163037	161163037	+	Missense_Mutation	SNP	T	T	C	rs4233367	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	161163037	161163037	T	C	SNP	ADAMTS4	NM_005099	human	genbank	57_37b	-1	reviewed	missense	c.1877	p.Q626R	0.998	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-		
ANKRD16	54522	genome.wustl.edu	37	10	5930026	5930026	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	5930026	5930026	G	A	SNP	ANKRD16	NM_001009941	human	genbank	57_37b	-1	validated	missense	c.319	p.P107S	1.000	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors	
AOX2P	344454	genome.wustl.edu	37	2	201637798	201637798	+	Splice_Site	SNP	G	A	A	rs62623595	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	201637798	201637798	G	A	SNP	AOX2P	ENST00000467645	human	ensembl	57_37b	+1	known	splice_site	c.NULL	NULL	1.000	-	-	-		
BARX2	8538	genome.wustl.edu	37	11	129306679	129306679	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	129306679	129306679	C	T	SNP	BARX2	NM_003658	human	genbank	57_37b	+1	reviewed	missense	c.221	p.S74L	1.000	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
CEP120	153241	genome.wustl.edu	37	5	122685675	122685675	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	122685675	122685675	G	A	SNP	CEP120	NM_153223	human	genbank	57_37b	-1	reviewed	nonsense	c.2689	p.R897*	0.990	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors	
CNTNAP4	85445	genome.wustl.edu	37	16	76528874	76528874	+	Missense_Mutation	SNP	G	G	A	rs74607924	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	76528874	76528874	G	A	SNP	CNTNAP4	NM_033401	human	genbank	57_37b	+1	reviewed	missense	c.2147	p.R716H	0.000	NULL	NULL	-		
CPNE3	8895	genome.wustl.edu	37	8	87559937	87559937	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	87559937	87559937	A	C	SNP	CPNE3	NM_003909	human	genbank	57_37b	+1	reviewed	splice_site	c.820-2	e9-2	1.000	-	-	-	no_errors	
CYP26B1	56603	genome.wustl.edu	37	2	72361955	72361955	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	72361955	72361955	C	T	SNP	CYP26B1	NM_019885	human	genbank	57_37b	-1	reviewed	missense	c.796	p.A266T	1.000	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors	
DHX15	1665	genome.wustl.edu	37	4	24542562	24542562	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	24542562	24542562	A	T	SNP	DHX15	NM_001358	human	genbank	57_37b	-1	reviewed	missense	c.1495	p.Y499N	1.000	superfamily_SSF52540	HMMSmart_DEXDc,superfamily_SSF52540,HMMSmart_AAA,PatternScan_DEAH_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605	-	no_errors	
ENSG00000180662	0	genome.wustl.edu	37	14	65934905	65934905	+	Missense_Mutation	SNP	A	A	C	rs56363317	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	65934905	65934905	A	C	SNP	ENSG00000180662	ENST00000327274	human	ensembl	57_37b	-1	known	missense	c.155	p.L52R	1.000	HMMPfam_Ribosomal_L21e,superfamily_Translation proteins SH3-like domain	HMMPfam_Ribosomal_L21e,superfamily_Translation proteins SH3-like domain	-		
ENSG00000205533	0	genome.wustl.edu	37	14	90740325	90740327	+	In_Frame_Del	DEL	TCT	TCT	-	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	90740325	90740327	TCT	-	DEL	ENSG00000205533	ENST00000380590	human	ensembl	57_37b	-1	known	in_frame_del	c.355_353	p.K118in_frame_del	0.000:0.000:0.000	NULL	NULL	(deletion:cds_exon[90740179,90740679])	no_errors	
ENSG00000247594	0	genome.wustl.edu	37	18	32913951	32913951	+	RNA	SNP	T	T	G	rs55689466	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	32913951	32913951	T	G	SNP	ENSG00000247594	ENST00000499683	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.943	-	-	-		
FASTKD3	79072	genome.wustl.edu	37	5	7867647	7867647	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	7867647	7867647	C	T	SNP	FASTKD3	NM_024091	human	genbank	57_37b	-1	validated	missense	c.550	p.A184T	0.993	NULL	HMMPfam_FAST_1,HMMPfam_FAST_2,HMMPfam_RAP	-	no_errors	
FASTKD5	60493	genome.wustl.edu	37	20	3127664	3127664	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	3127664	3127664	A	C	SNP	FASTKD5	NM_021826	human	genbank	57_37b	-1	validated	missense	c.2053	p.C685G	0.000	NULL	HMMPfam_FAST_1,HMMPfam_FAST_2,HMMPfam_RAP	-	no_errors	
FGD5	152273	genome.wustl.edu	37	3	14861440	14861440	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	14861440	14861440	G	A	SNP	FGD5	NM_152536	human	genbank	57_37b	+1	validated	missense	c.862	p.G288R	0.027	NULL	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger,PatternScan_C_TYPE_LECTIN_1	-	no_errors	
GMDS	2762	genome.wustl.edu	37	6	2124961	2124961	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	2124961	2124961	C	G	SNP	GMDS	NM_001500	human	genbank	57_37b	-1	validated	missense	c.107	p.G36A	1.000	superfamily_NAD(P)-bd,HMMPfam_Epimerase	superfamily_NAD(P)-bd,HMMPfam_Epimerase	-	no_errors	
GNAO1	2775	genome.wustl.edu	37	16	56388797	56388797	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	56388797	56388797	C	T	SNP	GNAO1	NM_020988	human	genbank	57_37b	+1	validated	silent	c.897	p.D299	0.661	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_G-alpha,HMMSmart_SM00275	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_Transducin (alpha subunit) insertion domain	-	no_errors	
HACE1	57531	genome.wustl.edu	37	6	105219210	105219210	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	105219210	105219210	T	A	SNP	HACE1	NM_020771	human	genbank	57_37b	-1	validated	missense	c.2069	p.N690I	1.000	superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors	
HEATR7B2	133558	genome.wustl.edu	37	5	41052602	41052602	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	41052602	41052602	C	T	SNP	HEATR7B2	NM_173489	human	genbank	57_37b	-1	validated	missense	c.1195	p.V399I	0.928	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors	
HMHA1	23526	genome.wustl.edu	37	19	1080311	1080311	+	Silent	SNP	G	G	C	rs2074454	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	1080311	1080311	G	C	SNP	HMHA1	NM_012292	human	genbank	57_37b	+1	validated	silent	c.1761	p.P587	0.000	NULL	HMMSmart_FCH,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	-		
IL17RD	54756	genome.wustl.edu	37	3	57139978	57139978	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	57139978	57139978	G	A	SNP	IL17RD	NM_017563	human	genbank	57_37b	-1	validated	silent	c.654	p.F218	0.941	NULL	HMMPfam_SEFIR	-	no_errors	
INADL	10207	genome.wustl.edu	37	1	62274159	62274160	+	Frame_Shift_Del	DEL	AC	AC	-	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	62274159	62274160	AC	-	DEL	INADL	NM_176877	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1640_1641	p.Q549fs	0.996:0.507	superfamily_PDZ domain-like	HMMPfam_L27_2,HMMSmart_SM00569,superfamily_L27 domain,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	(deletion:cds_exon[62274146,62274202])	no_errors	
ITFG1	81533	genome.wustl.edu	37	16	47252799	47252799	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	47252799	47252799	C	A	SNP	ITFG1	NM_030790	human	genbank	57_37b	-1	provisional	missense	c.1433	p.G478V	0.998	NULL	superfamily_SSF69318,HMMPfam_FG-GAP	-	no_errors	
LARP1B	55132	genome.wustl.edu	37	4	129043387	129043387	+	Nonstop_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	129043387	129043387	G	C	SNP	LARP1B	NM_178043	human	genbank	57_37b	+1	reviewed	nonstop	c.1568	p.*523S	0.001	NULL	"superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00715,HMMPfam_La,PatternScan_CYTOCHROME_B5_1"	-	no_errors	
LOC100134663	0	genome.wustl.edu	37	7	45107965	45107965	+	Missense_Mutation	SNP	C	T	T	rs13231913	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	45107965	45107965	C	T	SNP	LOC100134663	XM_001718823	human	genbank	57_37b	-1	model	missense	c.997	p.A333T	0.000	NULL	NULL	-		
LOC100288715	0	genome.wustl.edu	37	9	34552251	34552251	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	34552251	34552251	G	A	SNP	LOC100288715	XM_002342889	human	genbank	57_37b	+1	model	silent	c.204	p.P68	0.999	NULL	NULL	-	no_errors	
LOC100294300	0	genome.wustl.edu	37	6	372728	372728	+	Missense_Mutation	SNP	C	C	T	rs2666959	by1000genomes	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	372728	372728	C	T	SNP	LOC100294300	XM_002344034	human	genbank	57_37b	+1	model	missense	c.73	p.R25C	0.000	NULL	NULL	-		
LOC642515	642515	genome.wustl.edu	37	9	134433562	134433562	+	Silent	SNP	C	C	T	rs34226924	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	134433562	134433562	C	T	SNP	LOC642515	XM_926011	human	genbank	57_37b	+1	model	silent	c.840	p.Y280	0.987	NULL	HMMPfam_CD225	-		
MAMLD1	10046	genome.wustl.edu	37	X	149680554	149680554	+	Silent	SNP	C	C	T	rs2070779	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	149680554	149680554	C	T	SNP	MAMLD1	ENST00000432680	human	ensembl	57_37b	+1	known	silent	c.2208	p.S736	0.530	NULL	NULL	-		
MLEC	9761	genome.wustl.edu	37	12	121132627	121132627	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	121132627	121132627	G	T	SNP	MLEC	NM_014730	human	genbank	57_37b	+1	validated	missense	c.415	p.V139L	1.000	NULL	NULL	-	no_errors	
MLL3	58508	genome.wustl.edu	37	7	151945474	151945474	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	151945474	151945474	G	C	SNP	MLL3	NM_170606	human	genbank	57_37b	-1	reviewed	nonsense	c.2045	p.S682*	0.000	NULL	PatternScan_HMGI_Y,HMMPfam_AT_hook,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,HMMSmart_SM00184,PatternScan_ZF_PHD_1,PatternScan_ATPASE_ALPHA_BETA,HMMSmart_SM00398,HMMPfam_HMG_box,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-	no_errors	
NCAM2	4685	genome.wustl.edu	37	21	22782691	22782691	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	22782691	22782691	A	-	DEL	NCAM2	NM_004540	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1293	p.I432fs	0.938	superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig	HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	(deletion:cds_exon[22782594,22782781])	no_errors	
NEK5	341676	genome.wustl.edu	37	13	52661583	52661583	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	52661583	52661583	C	A	SNP	NEK5	NM_199289	human	genbank	57_37b	-1	provisional	missense	c.1283	p.R428L	1.000	NULL	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
NFE2L3	9603	genome.wustl.edu	37	7	26224284	26224284	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	26224284	26224284	T	C	SNP	NFE2L3	NM_004289	human	genbank	57_37b	+1	reviewed	silent	c.966	p.C322	0.004	NULL	superfamily_Euk_transcr_DNA,HMMPfam_bZIP_1,HMMSmart_BRLZ,PatternScan_BZIP_BASIC	-	no_errors	
ODZ2	57451	genome.wustl.edu	37	5	167545418	167545418	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	167545418	167545418	C	T	SNP	ODZ2	NM_001122679	human	genbank	57_37b	+1	inferred	silent	c.1935	p.C645	1.000	HMMSmart_SM00181,HMMPfam_EGF_2,superfamily_EGF/Laminin	HMMPfam_Ten_N,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Carboxypeptidase regulatory domain,superfamily_NHL repeat,HMMPfam_NHL,HMMPfam_RHS_repeat	-	no_errors	
OPRM1	4988	genome.wustl.edu	37	6	154412132	154412132	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	154412132	154412132	G	T	SNP	OPRM1	NM_001145279	human	genbank	57_37b	+1	validated	missense	c.968	p.W323L	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR2B3	442184	genome.wustl.edu	37	6	29055016	29055016	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	29055016	29055016	C	A	SNP	OR2B3	NM_001005226	human	genbank	57_37b	-1	validated	nonsense	c.10	p.E4*	0.329	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OTOG	340990	genome.wustl.edu	37	11	17667125	17667125	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	17667125	17667125	C	T	SNP	OTOG	XM_002343051	human	genbank	57_37b	+1	model	missense	c.8509	p.R2837C	0.999	NULL	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_VWC,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_TIL,HMMPfam_AbfB,superfamily_AbfB domain (Pfam 05270),HMMSmart_SM00041	-	no_errors	
PCDHGA11	56105	genome.wustl.edu	37	5	140801090	140801090	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140801090	140801090	C	T	SNP	PCDHGA11	NM_018914	human	genbank	57_37b	+1	reviewed	missense	c.296	p.T99M	0.000	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
POR	5447	genome.wustl.edu	37	7	75609677	75609677	+	Missense_Mutation	SNP	A	A	G	rs1135612	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	75609677	75609677	A	G	SNP	POR	ENST00000447222	human	ensembl	57_37b	+1	known	missense	c.304	p.R102G	0.002	superfamily_Flavoproteins,HMMPfam_Flavodoxin_1	superfamily_Flavoproteins,HMMPfam_Flavodoxin_1,superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_1	-		
PSMD1	5707	genome.wustl.edu	37	2	231927025	231927025	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	231927025	231927025	G	-	DEL	PSMD1	NM_002807	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.124	p.V42fs	1.000	NULL	HMMPfam_PC_rep,superfamily_ARM repeat	(deletion:cds_exon[231926962,231927035])	no_errors	
RAB3GAP2	25782	genome.wustl.edu	37	1	220340879	220340879	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	220340879	220340879	A	G	SNP	RAB3GAP2	NM_012414	human	genbank	57_37b	-1	reviewed	missense	c.2945	p.V982A	0.019	NULL	NULL	-	no_errors	
RAD54L	8438	genome.wustl.edu	37	1	46743834	46743834	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	46743834	46743834	C	A	SNP	RAD54L	NM_001142548	human	genbank	57_37b	+1	reviewed	missense	c.2124	p.H708Q	0.996	NULL	HMMSmart_DEXDc,superfamily_SSF52540,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C	-	no_errors	
RDH5	5959	genome.wustl.edu	37	12	56117700	56117700	+	Silent	SNP	C	C	G	rs13193	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56117700	56117700	C	G	SNP	RDH5	NM_002905	human	genbank	57_37b	+1	reviewed	silent	c.600	p.V200	1.000	superfamily_NAD(P)-bd	PatternScan_ADH_SHORT,superfamily_NAD(P)-bd,HMMPfam_adh_short	-		
SAPS1	22870	genome.wustl.edu	37	19	55756980	55756980	+	Silent	SNP	A	A	G	rs3745920	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55756980	55756980	A	G	SNP	SAPS1	NM_014931	human	genbank	57_37b	-1	validated	silent	c.294	p.A98	0.003	NULL	HMMPfam_SAPS	-		
SAPS2	9701	genome.wustl.edu	37	22	50873497	50873497	+	Silent	SNP	C	T	T	rs1134848	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	50873497	50873497	C	T	SNP	SAPS2	NM_014678	human	genbank	57_37b	+1	validated	silent	c.1503	p.S501	0.979	HMMPfam_SAPS	HMMPfam_SAPS	-		
SLC5A7	60482	genome.wustl.edu	37	2	108604635	108604635	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	108604635	108604635	G	C	SNP	SLC5A7	NM_021815	human	genbank	57_37b	+1	provisional	silent	c.24	p.L8	1.000	NULL	PatternScan_NA_SOLUT_SYMP_1,PatternScan_NA_SOLUT_SYMP_2,HMMPfam_SSF	-	no_errors	
UHRF1	29128	genome.wustl.edu	37	19	4956762	4956762	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0XV-01	TCGA-AN-A0XV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	4956762	4956762	A	G	SNP	UHRF1	ENST00000398240	human	ensembl	57_37b	+1	known	missense	c.2209	p.I737V	1.000	superfamily_RING/U-box,HMMSmart_SM00184	HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin,PatternScan_ZF_PHD_1,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,HMMSmart_SM00184,HMMSmart_SM00466,HMMPfam_YDG_SRA,superfamily_RING/U-box,PatternScan_ZF_RING_1	-	no_errors	
