Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADAMTSL3	57188	genome.wustl.edu	37	15	84373178	84373178	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	84373178	84373178	C	T	SNP	ADAMTSL3	NM_207517	human	genbank	57_37b	+1	validated	missense	c.107	p.P36L	1.000	NULL	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_PLAC	-	no_errors	
ALPK3	57538	genome.wustl.edu	37	15	85401259	85401259	+	Missense_Mutation	SNP	C	C	T	rs306197	byCluster;by1000genomes	TCGA-AO-A03V-01	TCGA-AO-A03V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	85401259	85401259	C	T	SNP	ALPK3	NM_020778	human	genbank	57_37b	+1	validated	missense	c.3896	p.P1299L	0.000	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Protein kinase-like (PK-like),HMMPfam_Alpha_kinase,HMMSmart_SM00811	-		
ANKRD12	23253	genome.wustl.edu	37	18	9211612	9211612	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	9211612	9211612	C	T	SNP	ANKRD12	NM_015208	human	genbank	57_37b	+1	validated	missense	c.482	p.T161M	1.000	superfamily_Ankyrin repeat	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors	
AP4M1	9179	genome.wustl.edu	37	7	99701247	99701247	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	99701247	99701247	A	G	SNP	AP4M1	NM_004722	human	genbank	57_37b	+1	reviewed	missense	c.475	p.T159A	1.000	NULL	PatternScan_CLAT_ADAPTOR_M_1,HMMPfam_Clat_adaptor_s,superfamily_Longin_like,HMMPfam_Adap_comp_sub,superfamily_AP50,PatternScan_CLAT_ADAPTOR_M_2	-	no_errors	
ARAF	369	genome.wustl.edu	37	X	47430771	47430771	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	47430771	47430771	G	A	SNP	ARAF	NM_001654	human	genbank	57_37b	+1	reviewed	missense	c.1736	p.R579Q	1.000	NULL	superfamily_SSF54236,HMMPfam_RBD,HMMSmart_RBD,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
ASMTL	8623	genome.wustl.edu	37	X	1522340	1522340	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	1522340	1522340	T	G	SNP	ASMTL	NM_004192	human	genbank	57_37b	-1	validated	missense	c.1688	p.K563T	0.000	HMMPfam_Methyltransf_2,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	"superfamily_Maf/Ham1,HMMPfam_Maf,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Methyltransf_2,superfamily_S-adenosyl-L-methionine-dependent methyltransferases"	-	no_errors	
AURKAIP1	54998	genome.wustl.edu	37	1	1309283	1309283	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	1309283	1309283	C	T	SNP	AURKAIP1	NM_001127229	human	genbank	57_37b	-1	validated	splice_site	c.499-1	e3-1	0.996	-	-	-	no_errors	
C19orf12	83636	genome.wustl.edu	37	19	30199322	30199322	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	30199322	30199322	G	A	SNP	C19orf12	NM_001031726	human	genbank	57_37b	-1	validated	missense	c.32	p.T11M	0.000	NULL	NULL	-	no_errors	
C9	735	genome.wustl.edu	37	5	39288989	39288989	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	39288989	39288989	A	-	DEL	C9	NM_001737	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.1481	p.L494fs	1.000	HMMPfam_MACPF,HMMSmart_MACPF	superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,HMMPfam_Ldl_recept_a,superfamily_LDL_rcpt_classA_cys-rich,HMMSmart_LDLa,PatternScan_LDLRA_1,HMMPfam_MACPF,HMMSmart_MACPF,PatternScan_MAC_PERFORIN,superfamily_SSF57196,PatternScan_EGF_2,PatternScan_EGF_1	(deletion:cds_exon[39288825,39289053])	no_errors	
CABIN1	23523	genome.wustl.edu	37	22	24468359	24468359	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	24468359	24468359	C	T	SNP	CABIN1	NM_012295	human	genbank	57_37b	+1	reviewed	missense	c.2531	p.S844L	1.000	superfamily_SSF48452	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR,HMMPfam_MEF2_binding	-	no_errors	
CD300A	11314	genome.wustl.edu	37	17	72470679	72470679	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	72470679	72470679	T	A	SNP	CD300A	NM_007261	human	genbank	57_37b	+1	validated	missense	c.388	p.S130T	0.000	NULL	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409	-	no_errors	
CDH12	1010	genome.wustl.edu	37	5	21817115	21817115	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	21817115	21817115	C	T	SNP	CDH12	NM_004061	human	genbank	57_37b	-1	reviewed	missense	c.941	p.G314E	1.000	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors	
CYP2C8	1558	genome.wustl.edu	37	10	96802742	96802742	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	96802742	96802742	C	A	SNP	CYP2C8	NM_000770	human	genbank	57_37b	-1	reviewed	missense	c.1054	p.V352L	0.029	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors	
DLC1	10395	genome.wustl.edu	37	8	12947852	12947852	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	12947852	12947852	C	A	SNP	DLC1	NM_182643	human	genbank	57_37b	-1	reviewed	missense	c.3983	p.C1328F	1.000	superfamily_Bet v1-like,HMMPfam_START,HMMSmart_SM00234	HMMPfam_SAM_2,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_Bet v1-like,HMMPfam_START,HMMSmart_SM00234	-	no_errors	
ENSG00000198580	0	genome.wustl.edu	37	7	6713936	6713936	+	Missense_Mutation	SNP	C	C	T	rs7798061	byCluster;byFrequency;by1000genomes	TCGA-AO-A03V-01	TCGA-AO-A03V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	6713936	6713936	C	T	SNP	ENSG00000198580	ENST00000401847	human	ensembl	57_37b	+1	known	missense	c.208	p.H70Y	0.982	superfamily_C2H2 and C2HC zinc fingers	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-		
FBXO2	26232	genome.wustl.edu	37	1	11708857	11708857	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	11708857	11708857	G	C	SNP	FBXO2	NM_012168	human	genbank	57_37b	-1	reviewed	missense	c.785	p.P262R	0.998	HMMPfam_FBA,superfamily_Galactose-binding domain-like	superfamily_F-box domain,HMMPfam_F-box,HMMPfam_FBA,superfamily_Galactose-binding domain-like	-	no_errors	
FBXO30	84085	genome.wustl.edu	37	6	146127358	146127358	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	146127358	146127358	T	G	SNP	FBXO30	NM_032145	human	genbank	57_37b	-1	reviewed	missense	c.184	p.N62H	1.000	superfamily_Traf_like	superfamily_Traf_like,superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX	-	no_errors	
FOXP2	93986	genome.wustl.edu	37	7	114066679	114066679	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	114066679	114066679	G	A	SNP	FOXP2	NM_148898	human	genbank	57_37b	+1	reviewed	missense	c.113	p.G38D	1.000	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_FH,superfamily_SSF46785,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2	-	no_errors	
GHR	2690	genome.wustl.edu	37	5	42695133	42695133	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	42695133	42695133	C	G	SNP	GHR	NM_000163	human	genbank	57_37b	+1	reviewed	missense	c.381	p.I127M	0.999	superfamily_Fibronectin type III	superfamily_Fibronectin type III,HMMPfam_fn3,PatternScan_HEMATOPO_REC_L_F1	-	no_errors	
GPR64	10149	genome.wustl.edu	37	X	19021075	19021075	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	19021075	19021075	C	G	SNP	GPR64	NM_001079858	human	genbank	57_37b	-1	validated	missense	c.2119	p.V707L	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2	HMMPfam_GPS,HMMSmart_SM00303,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors	
HEATR1	55127	genome.wustl.edu	37	1	236738059	236738059	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	236738059	236738059	C	A	SNP	HEATR1	NM_018072	human	genbank	57_37b	-1	validated	nonsense	c.3229	p.E1077*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_HEAT,HMMPfam_BP28CT	-	no_errors	
HIST1H2BF	8343	genome.wustl.edu	37	6	26199999	26199999	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26199999	26199999	C	T	SNP	HIST1H2BF	NM_003522	human	genbank	57_37b	+1	reviewed	silent	c.213	p.F71	1.000	superfamily_Histone-fold,HMMSmart_SM00427,HMMPfam_Histone	superfamily_Histone-fold,HMMSmart_SM00427,HMMPfam_Histone,PatternScan_HISTONE_H2B	-	no_errors	
HIVEP3	59269	genome.wustl.edu	37	1	42047320	42047320	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	42047320	42047320	G	A	SNP	HIVEP3	NM_024503	human	genbank	57_37b	-1	validated	missense	c.3149	p.S1050F	1.000	NULL	PatternScan_AIPM_HOMOCIT_SYNTH_1,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	
IGF2R	3482	genome.wustl.edu	37	6	160496980	160496980	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	160496980	160496980	C	T	SNP	IGF2R	NM_000876	human	genbank	57_37b	+1	reviewed	silent	c.5268	p.F1756	0.998	superfamily_Mannose 6-phosphate receptor domain,HMMPfam_CIMR	superfamily_Mannose 6-phosphate receptor domain,HMMPfam_CIMR,superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1	-	no_errors	
INPP5D	3635	genome.wustl.edu	37	2	233986963	233986963	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	233986963	233986963	C	A	SNP	INPP5D	ENST00000359570	human	ensembl	57_37b	+1	known	missense	c.345	p.D115E	0.954	NULL	HMMSmart_SM00252,HMMPfam_SH2,superfamily_SH2 domain,superfamily_DNase I-like,HMMSmart_SM00128,HMMPfam_Exo_endo_phos	-	no_errors	
KDM3A	55818	genome.wustl.edu	37	2	86707459	86707459	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	86707459	86707459	G	A	SNP	KDM3A	NM_018433	human	genbank	57_37b	+1	reviewed	missense	c.2486	p.S829N	0.916	NULL	superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC	-	no_errors	
KIAA0368	23392	genome.wustl.edu	37	9	114176803	114176803	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	114176803	114176803	C	A	SNP	KIAA0368	NM_001080398	human	genbank	57_37b	-1	provisional	silent	c.2427	p.G809	0.894	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors	
KIAA1109	84162	genome.wustl.edu	37	4	123109213	123109213	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	123109213	123109213	G	T	SNP	KIAA1109	NM_015312	human	genbank	57_37b	+1	reviewed	missense	c.791	p.S264I	1.000	NULL	PatternScan_ASP_PROTEASE,HMMPfam_FSA_C	-	no_errors	
KIAA1429	25962	genome.wustl.edu	37	8	95541412	95541412	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	95541412	95541412	C	T	SNP	KIAA1429	NM_015496	human	genbank	57_37b	-1	validated	missense	c.766	p.D256N	1.000	NULL	NULL	-	no_errors	
KIAA1462	57608	genome.wustl.edu	37	10	30317146	30317146	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	30317146	30317146	C	T	SNP	KIAA1462	NM_020848	human	genbank	57_37b	-1	validated	missense	c.1931	p.R644K	0.011	NULL	NULL	-	no_errors	
LOC100288765	0	genome.wustl.edu	37	9	69847032	69847032	+	Missense_Mutation	SNP	C	C	A	rs2491581	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	69847032	69847032	C	A	SNP	LOC100288765	XM_002342925	human	genbank	57_37b	+1	model	missense	c.1126	p.Q376K	0.892	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-		
LOC729806	729806	genome.wustl.edu	37	1	247353783	247353783	+	Missense_Mutation	SNP	T	T	C	rs12071728	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A03V-01	TCGA-AO-A03V-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	247353783	247353783	T	C	SNP	LOC729806	XM_002342180	human	genbank	57_37b	-1	model	missense	c.1249	p.K417E	0.999	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-		
LRRC34	151827	genome.wustl.edu	37	3	169524690	169524690	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	169524690	169524690	G	T	SNP	LRRC34	NM_153353	human	genbank	57_37b	-1	validated	silent	c.435	p.L145	0.994	superfamily_RNI-like,HMMSmart_SM00368	superfamily_RNI-like,HMMSmart_SM00368	-	no_errors	
MAP3K11	4296	genome.wustl.edu	37	11	65365763	65365763	+	Nonstop_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	65365763	65365763	C	G	SNP	MAP3K11	NM_002419	human	genbank	57_37b	-1	reviewed	nonstop	c.2543	p.*848S	0.074	NULL	superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_Kinase_like,HMMSmart_TyrKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
MOBKL1A	92597	genome.wustl.edu	37	4	71840935	71840935	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	71840935	71840935	A	G	SNP	MOBKL1A	NM_173468	human	genbank	57_37b	+1	reviewed	missense	c.341	p.Y114C	1.000	HMMPfam_Mob1_phocein,superfamily_Mob1/phocein	HMMPfam_Mob1_phocein,superfamily_Mob1/phocein	-	no_errors	
MPDZ	8777	genome.wustl.edu	37	9	13192136	13192136	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	13192136	13192136	T	C	SNP	MPDZ	NM_003829	human	genbank	57_37b	-1	validated	silent	c.1962	p.T654	0.416	NULL	HMMPfam_L27_2,superfamily_L27 domain,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors	
OR4C16	219428	genome.wustl.edu	37	11	55339821	55339821	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	55339821	55339821	C	A	SNP	OR4C16	NM_001004701	human	genbank	57_37b	+1	validated	missense	c.218	p.T73N	0.109	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PCDHB11	56125	genome.wustl.edu	37	5	140581431	140581431	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140581431	140581431	C	A	SNP	PCDHB11	NM_018931	human	genbank	57_37b	+1	reviewed	missense	c.2084	p.A695D	0.972	NULL	HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PDE3A	5139	genome.wustl.edu	37	12	20803395	20803395	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	20803395	20803395	G	A	SNP	PDE3A	NM_000921	human	genbank	57_37b	+1	validated	missense	c.2786	p.G929E	1.000	superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I	superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors	
PDZRN3	23024	genome.wustl.edu	37	3	73432884	73432884	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	73432884	73432884	C	T	SNP	PDZRN3	NM_015009	human	genbank	57_37b	-1	provisional	missense	c.2833	p.E945K	1.000	NULL	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,superfamily_TRAF domain-like,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors	
POLR2F	5435	genome.wustl.edu	37	22	38355468	38355468	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	38355468	38355468	G	A	SNP	POLR2F	NM_021974	human	genbank	57_37b	+1	reviewed	missense	c.206	p.R69Q	1.000	superfamily_RPB6/omega subunit-like,HMMPfam_RNA_pol_Rpb6,PatternScan_RNA_POL_K_14KD	superfamily_RPB6/omega subunit-like,HMMPfam_RNA_pol_Rpb6,PatternScan_RNA_POL_K_14KD	-	no_errors	
PPFIA2	8499	genome.wustl.edu	37	12	81678036	81678036	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	81678036	81678036	G	A	SNP	PPFIA2	NM_003625	human	genbank	57_37b	-1	reviewed	missense	c.2972	p.A991V	1.000	NULL	superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,HMMPfam_SAM_2	-	no_errors	
PPFIA2	8499	genome.wustl.edu	37	12	82147913	82147913	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	82147913	82147913	G	T	SNP	PPFIA2	NM_003625	human	genbank	57_37b	-1	reviewed	missense	c.88	p.H30N	1.000	NULL	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2	-	no_errors	
PUM2	23369	genome.wustl.edu	37	2	20455818	20455818	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	20455818	20455818	G	A	SNP	PUM2	NM_015317	human	genbank	57_37b	-1	provisional	silent	c.2598	p.F866	1.000	superfamily_ARM repeat,HMMPfam_PUF,HMMSmart_SM00025	superfamily_ARM repeat,HMMPfam_PUF,HMMSmart_SM00025	-	no_errors	
RYR3	6263	genome.wustl.edu	37	15	34023837	34023837	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	34023837	34023837	C	T	SNP	RYR3	NM_001036	human	genbank	57_37b	+1	validated	missense	c.7366	p.R2456C	0.999	NULL	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,HMMPfam_efhand,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors	
SERPINB12	89777	genome.wustl.edu	37	18	61233851	61233851	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	61233851	61233851	A	T	SNP	SERPINB12	NM_080474	human	genbank	57_37b	+1	provisional	missense	c.825	p.K275N	0.000	HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN	HMMPfam_Serpin,superfamily_Prot_inh_serpin,HMMSmart_SERPIN,PatternScan_SERPIN	-	no_errors	
SGSM1	129049	genome.wustl.edu	37	22	25294156	25294156	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	25294156	25294156	C	T	SNP	SGSM1	NM_001039948	human	genbank	57_37b	+1	validated	missense	c.2405	p.T802M	0.000	superfamily_Ypt/Rab-GAP domain of gyp1p	HMMPfam_RUN,HMMSmart_SM00593,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMSmart_SM00164,HMMPfam_TBC	-	no_errors	
SSH2	85464	genome.wustl.edu	37	17	27959760	27959760	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	27959760	27959760	C	G	SNP	SSH2	NM_033389	human	genbank	57_37b	-1	reviewed	missense	c.2371	p.E791Q	0.990	NULL	HMMPfam_DEK_C,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_DSPc,HMMSmart_SM00195,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
TARS2	80222	genome.wustl.edu	37	1	150476814	150476814	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	150476814	150476814	G	C	SNP	TARS2	NM_025150	human	genbank	57_37b	+1	provisional	missense	c.1621	p.D541H	1.000	superfamily_SSF55681	HMMPfam_TGS,superfamily_TGS-like,superfamily_Thr/Ala-tRNA-synth_IIc_edit,HMMPfam_tRNA_SAD,superfamily_SSF55681,HMMPfam_tRNA-synt_2b,superfamily_Anticodon_bd,HMMPfam_HGTP_anticodon	-	no_errors	
TBKBP1	9755	genome.wustl.edu	37	17	45773639	45773639	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	45773639	45773639	G	A	SNP	TBKBP1	NM_014726	human	genbank	57_37b	+1	validated	missense	c.161	p.R54Q	1.000	NULL	NULL	-	no_errors	
TGFBR3	7049	genome.wustl.edu	37	1	92161237	92161237	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	92161237	92161237	G	T	SNP	TGFBR3	NM_003243	human	genbank	57_37b	-1	validated	missense	c.2429	p.S810Y	1.000	NULL	HMMPfam_Zona_pellucida,HMMSmart_ZP,PatternScan_ZP_1	-	no_errors	
THSD1	55901	genome.wustl.edu	37	13	52971733	52971733	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	52971733	52971733	G	A	SNP	THSD1	NM_018676	human	genbank	57_37b	-1	reviewed	silent	c.655	p.L219	0.784	NULL	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7577547	7577547	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7577547	7577547	C	T	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.734	p.G245D	1.000	HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
TTC24	164118	genome.wustl.edu	37	1	156551848	156551848	+	Missense_Mutation	SNP	A	A	G	rs6682716	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A03V-01	TCGA-AO-A03V-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156551848	156551848	A	G	SNP	TTC24	ENST00000368237	human	ensembl	57_37b	+1	known	missense	c.692	p.E231G	0.002	superfamily_SSF48452	superfamily_SSF48452,HMMSmart_TPR,HMMPfam_TPR_4,HMMPfam_TPR_1	-		
TTN	7273	genome.wustl.edu	37	2	179498336	179498336	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179498336	179498336	C	G	SNP	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	missense	c.35046	p.L11682F	0.057	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
UBA7	7318	genome.wustl.edu	37	3	49847551	49847551	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49847551	49847551	T	G	SNP	UBA7	NM_003335	human	genbank	57_37b	-1	reviewed	missense	c.1699	p.T567P	1.000	superfamily_MoeB,HMMPfam_ThiF	PatternScan_UBIQUITIN_ACTIVAT_1,superfamily_MoeB,HMMPfam_ThiF,HMMPfam_UBA_e1_thiolCys,PatternScan_UBIQUITIN_ACTIVAT_2,HMMPfam_UBACT,HMMPfam_UBA_e1_C	-	no_errors	
ZNF583	147949	genome.wustl.edu	37	19	56925731	56925731	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A03V-01	TCGA-AO-A03V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	56925731	56925731	C	T	SNP	ZNF583	NM_152478	human	genbank	57_37b	+1	validated	missense	c.154	p.P52S	0.784	superfamily_Krueppel-associated_box,HMMSmart_KRAB	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF584	201514	genome.wustl.edu	37	19	58927215	58927215	+	Missense_Mutation	SNP	C	T	T	rs12986387	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A03V-01	TCGA-AO-A03V-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	58927215	58927215	C	T	SNP	ZNF584	ENST00000443917	human	ensembl	57_37b	+1	known	missense	c.298	p.R100C	0.002	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349	-		
