Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADAM11	4185	genome.wustl.edu	37	17	42851729	42851729	+	Silent	SNP	C	T	T	rs35936481	byCluster;by1000genomes	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	42851729	42851729	C	T	SNP	ADAM11	NM_002390	human	genbank	57_37b	+1	reviewed	silent	c.1059	p.H353	0.991	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR,HMMPfam_EGF_2,superfamily_EGF/Laminin,PatternScan_EGF_1"	-		
ADAMTSL3	57188	genome.wustl.edu	37	15	84639385	84639385	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	84639385	84639385	C	A	SNP	ADAMTSL3	NM_207517	human	genbank	57_37b	+1	validated	nonsense	c.2640	p.C880*	0.830	HMMSmart_SM00209,HMMPfam_TSP_1,superfamily_TSP-1 type 1 repeat	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_PLAC	-	no_errors	
AKAP14	158798	genome.wustl.edu	37	X	119037310	119037310	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	119037310	119037310	G	C	SNP	AKAP14	NM_178813	human	genbank	57_37b	+1	reviewed	missense	c.124	p.A42P	0.000	NULL	NULL	-	no_errors	
AMT	275	genome.wustl.edu	37	3	49456564	49456575	+	In_Frame_Del	DEL	CCCCGCTACCGG	CCCCGCTACCGG	-	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	CCCCGCTACCGG	CCCCGCTACCGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49456564	49456575	CCCCGCTACCGG	-	DEL	AMT	NM_000481	human	genbank	57_37b	-1	reviewed	in_frame_del	c.717_706	p.PVAG236in_frame_del	0.511:0.005:0.005:0.000:0.000:0.000:0.000:0.004:0.006:0.005:0.997:0.999	superfamily_Aminomethyltransferase folate-binding domain,HMMPfam_GCV_T	superfamily_Aminomethyltransferase folate-binding domain,HMMPfam_GCV_T,HMMPfam_GCV_T_C,superfamily_Aminomethyltransferase beta-barrel domain	(deletion:cds_exon[49456404,49456584])	no_errors	
ANKRD35	148741	genome.wustl.edu	37	1	145558223	145558223	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	145558223	145558223	G	A	SNP	ANKRD35	NM_144698	human	genbank	57_37b	+1	validated	missense	c.340	p.D114N	1.000	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors	
AP1B1	162	genome.wustl.edu	37	22	29737711	29737711	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	29737711	29737711	G	A	SNP	AP1B1	NM_001127	human	genbank	57_37b	-1	reviewed	silent	c.1575	p.I525	1.000	superfamily_ARM repeat,HMMPfam_Adaptin_N	superfamily_ARM repeat,HMMPfam_Adaptin_N,HMMSmart_SM00185,superfamily_Clathrin adaptor appendage domain,HMMSmart_SM00809,HMMPfam_Alpha_adaptinC2,superfamily_Subdomain of clathrin and coatomer appendage domain,HMMPfam_B2-adapt-app_C	-	no_errors	
AP2A1	160	genome.wustl.edu	37	19	50309000	50309000	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50309000	50309000	C	G	SNP	AP2A1	NM_014203	human	genbank	57_37b	+1	reviewed	missense	c.2617	p.Q873E	0.998	HMMPfam_Alpha_adaptin_C,superfamily_Subdomain of clathrin and coatomer appendage domain	superfamily_ARM repeat,HMMPfam_Adaptin_N,superfamily_Clathrin adaptor appendage domain,HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809,HMMPfam_Alpha_adaptin_C,superfamily_Subdomain of clathrin and coatomer appendage domain	-	no_errors	
APOB	338	genome.wustl.edu	37	2	21235092	21235092	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	21235092	21235092	G	T	SNP	APOB	NM_000384	human	genbank	57_37b	-1	reviewed	missense	c.4648	p.L1550M	0.627	NULL	superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,HMMPfam_Vitellogenin_N,HMMSmart_SM00638,superfamily_Lipovitellin-phosvitin complex superhelical domain,HMMPfam_DUF1943,HMMPfam_DUF1081	-	no_errors	
APPBP2	10513	genome.wustl.edu	37	17	58538075	58538075	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	58538075	58538075	G	A	SNP	APPBP2	NM_006380	human	genbank	57_37b	-1	reviewed	missense	c.1010	p.A337V	1.000	superfamily_TPR-like	superfamily_TPR-like,HMMSmart_SM00028	-	no_errors	
ATAD3B	83858	genome.wustl.edu	37	1	1426042	1426042	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	1426042	1426042	G	A	SNP	ATAD3B	NM_031921	human	genbank	57_37b	+1	provisional	silent	c.1605	p.V535	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AAA	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA	-	no_errors	
ATP10A	57194	genome.wustl.edu	37	15	25959256	25959267	+	In_Frame_Del	DEL	ACTTGTGGCTGG	ACTTGTGGCTGG	-	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	ACTTGTGGCTGG	ACTTGTGGCTGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	25959256	25959267	ACTTGTGGCTGG	-	DEL	ATP10A	NM_024490	human	genbank	57_37b	-1	reviewed	in_frame_del	c.1909_1898	p.SSHK633in_frame_del	0.000:0.002:0.033:0.039:0.045:0.054:0.056:0.009:0.004:0.016:0.026:0.105	superfamily_SSF56784	HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Hydrolase_3	(deletion:cds_exon[25958821,25959388])	no_errors	
BID	637	genome.wustl.edu	37	22	18220856	18220856	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	18220856	18220856	C	T	SNP	BID	NM_197966	human	genbank	57_37b	-1	reviewed	missense	c.641	p.R214H	0.005	superfamily_SSF56854,HMMPfam_BID	superfamily_SSF56854,HMMPfam_BID,PatternScan_BH3	-	no_errors	
BRCA2	675	genome.wustl.edu	37	13	32972561	32972561	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	32972561	32972561	G	C	SNP	BRCA2	NM_000059	human	genbank	57_37b	+1	reviewed	missense	c.9911	p.C3304S	0.974	NULL	HMMPfam_BRCA2,superfamily_BRCA2_helical,HMMPfam_BRCA-2_helical,superfamily_Nucleic_acid_OB,HMMPfam_BRCA-2_OB1,HMMPfam_Tower,superfamily_SSF81878,HMMPfam_BRCA-2_OB3	-	no_errors	
C14orf49	161176	genome.wustl.edu	37	14	95918641	95918641	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	95918641	95918641	G	A	SNP	C14orf49	NM_152592	human	genbank	57_37b	-1	validated	missense	c.1217	p.P406L	0.508	NULL	HMMSmart_SM00150,superfamily_Spectrin repeat,HMMPfam_KASH	-	no_errors	
C4orf36	132989	genome.wustl.edu	37	4	87809333	87809333	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	87809333	87809333	C	T	SNP	C4orf36	NM_144645	human	genbank	57_37b	-1	validated	missense	c.161	p.G54D	0.000	NULL	NULL	-	no_errors	
C6orf89	221477	genome.wustl.edu	37	6	36882408	36882408	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	36882408	36882408	G	A	SNP	C6orf89	NM_152734	human	genbank	57_37b	+1	validated	missense	c.655	p.G219R	0.994	NULL	NULL	-	no_errors	
CACNA1G	8913	genome.wustl.edu	37	17	48653132	48653132	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	48653132	48653132	G	T	SNP	CACNA1G	NM_018896	human	genbank	57_37b	+1	validated	missense	c.1369	p.A457S	0.849	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors	
CACNA2D3	55799	genome.wustl.edu	37	3	54905585	54905585	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	54905585	54905585	G	T	SNP	CACNA2D3	NM_018398	human	genbank	57_37b	+1	reviewed	missense	c.1646	p.R549L	1.000	HMMPfam_Cache_1	HMMPfam_VWA_N,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_Cache_1	-	no_errors	
CCR7	1236	genome.wustl.edu	37	17	38711515	38711515	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	38711515	38711515	G	A	SNP	CCR7	NM_001838	human	genbank	57_37b	-1	reviewed	nonsense	c.616	p.Q206*	0.062	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
CD9	928	genome.wustl.edu	37	12	6309673	6309673	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	6309673	6309673	T	A	SNP	CD9	NM_001769	human	genbank	57_37b	+1	reviewed	missense	c.8	p.V3D	1.000	NULL	HMMPfam_Tetraspannin,PatternScan_TM4_1,superfamily_Tetraspanin	-	no_errors	
CDR2L	30850	genome.wustl.edu	37	17	72998158	72998158	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	72998158	72998158	G	A	SNP	CDR2L	NM_014603	human	genbank	57_37b	+1	validated	splice_site	c.342-1	e4-1	1.000	-	-	-	no_errors	
CEP110	11064	genome.wustl.edu	37	9	123937323	123937323	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	123937323	123937323	C	G	SNP	CEP110	NM_007018	human	genbank	57_37b	+1	reviewed	missense	c.6775	p.Q2259E	1.000	NULL	superfamily_L domain-like,HMMSmart_SM00365,HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_Prefoldin,superfamily_tRNA-binding arm	-	no_errors	
CEP170	9859	genome.wustl.edu	37	1	243327823	243327823	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	243327823	243327823	T	C	SNP	CEP170	NM_014812	human	genbank	57_37b	-1	reviewed	missense	c.3439	p.I1147V	1.000	NULL	superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA	-	no_errors	
CFTR	1080	genome.wustl.edu	37	7	117282532	117282532	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	117282532	117282532	T	C	SNP	CFTR	NM_000492	human	genbank	57_37b	+1	reviewed	missense	c.3758	p.L1253S	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
CPNE4	131034	genome.wustl.edu	37	3	131300432	131300432	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	131300432	131300432	A	T	SNP	CPNE4	NM_130808	human	genbank	57_37b	-1	reviewed	missense	c.858	p.N286K	1.000	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_Copine,PatternScan_CYTOCHROME_P450	-	no_errors	
CRYGC	1420	genome.wustl.edu	37	2	208993146	208993146	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	208993146	208993146	C	A	SNP	CRYGC	NM_020989	human	genbank	57_37b	-1	reviewed	missense	c.306	p.M102I	0.992	superfamily_gamma-Crystallin-like,HMMPfam_Crystall,HMMSmart_SM00247	superfamily_gamma-Crystallin-like,HMMPfam_Crystall,HMMSmart_SM00247	-	no_errors	
CRYGC	1420	genome.wustl.edu	37	2	208993166	208993166	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	208993166	208993166	C	A	SNP	CRYGC	NM_020989	human	genbank	57_37b	-1	reviewed	nonsense	c.286	p.E96*	0.891	HMMPfam_Crystall,HMMSmart_SM00247,superfamily_gamma-Crystallin-like	HMMPfam_Crystall,HMMSmart_SM00247,superfamily_gamma-Crystallin-like	-	no_errors	
CSF3R	1441	genome.wustl.edu	37	1	36940986	36940986	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	36940986	36940986	C	G	SNP	CSF3R	NM_156039	human	genbank	57_37b	-1	reviewed	missense	c.353	p.R118P	0.041	superfamily_FN_III-like	HMMPfam_Lep_receptor_Ig,superfamily_FN_III-like,HMMSmart_FN3,PatternScan_HEMATOPO_REC_L_F2,HMMPfam_fn3	-	no_errors	
CXorf58	254158	genome.wustl.edu	37	X	23956748	23956748	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	23956748	23956748	A	T	SNP	CXorf58	NM_152761	human	genbank	57_37b	+1	validated	missense	c.870	p.Q290H	0.070	NULL	NULL	-	no_errors	
CYLC1	1538	genome.wustl.edu	37	X	83129529	83129529	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	83129529	83129529	G	C	SNP	CYLC1	NM_021118	human	genbank	57_37b	+1	provisional	missense	c.1813	p.E605Q	0.998	NULL	NULL	-	no_errors	
DAB1	1600	genome.wustl.edu	37	1	57537166	57537193	+	Splice_Site	DEL	CCAGCGCAAGGATAAATTCACAGGTATA	CCAGCGCAAGGATAAATTCACAGGTATA	-	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	CCAGCGCAAGGATAAATTCACAGGTATA	CCAGCGCAAGGATAAATTCACAGGTATA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	57537166	57537193	CCAGCGCAAGGATAAATTCACAGGTATA	-	DEL	DAB1	NM_021080	human	genbank	57_37b	-1	reviewed	splice_site_del	c.558+2_558+1	e5+2	0.000:0.000:0.000:0.002:0.000:0.000:0.000:0.000:0.003:0.315:0.290:0.002:0.000:0.000:0.000:0.000:0.000:0.002:0.014:0.011:0.009:0.001:0.001:0.000:0.000:0.000:0.999:1.000	-	-	(deletion:intron[57536735,57537194])	no_errors	
DCC	1630	genome.wustl.edu	37	18	50918216	50918216	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	50918216	50918216	G	A	SNP	DCC	NM_005215	human	genbank	57_37b	+1	reviewed	missense	c.2647	p.V883I	1.000	superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_Neogenin_C	-	no_errors	
DDX12	440081	genome.wustl.edu	37	12	9583286	9583286	+	Silent	SNP	A	G	G	rs74439745	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	9583286	9583286	A	G	SNP	DDX12	NM_004400	human	genbank	57_37b	-1	validated	silent	c.1140	p.A380	0.732	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00488,HMMPfam_DEAD_2	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00488,HMMPfam_DEAD_2,HMMSmart_SM00491	-		
DDX56	54606	genome.wustl.edu	37	7	44606075	44606075	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	44606075	44606075	T	C	SNP	DDX56	NM_019082	human	genbank	57_37b	-1	reviewed	missense	c.1538	p.K513R	0.973	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors	
DISP2	85455	genome.wustl.edu	37	15	40660566	40660566	+	Silent	SNP	G	A	A	rs72733420	byCluster;byFrequency;by1000genomes	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	40660566	40660566	G	A	SNP	DISP2	NM_033510	human	genbank	57_37b	+1	reviewed	silent	c.2253	p.A751	0.001	NULL	superfamily_SSF82866	-		
DLC1	10395	genome.wustl.edu	37	8	13357276	13357276	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	13357276	13357276	G	T	SNP	DLC1	NM_182643	human	genbank	57_37b	-1	reviewed	missense	c.305	p.A102D	1.000	NULL	HMMPfam_SAM_2,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_Bet v1-like,HMMPfam_START,HMMSmart_SM00234	-	no_errors	
DLEC1	9940	genome.wustl.edu	37	3	38080927	38080927	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	38080927	38080927	C	G	SNP	DLEC1	NM_007337	human	genbank	57_37b	+1	reviewed	missense	c.211	p.L71V	0.004	NULL	NULL	-	no_errors	
DMXL1	1657	genome.wustl.edu	37	5	118573104	118573104	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	118573104	118573104	T	C	SNP	DMXL1	NM_005509	human	genbank	57_37b	+1	validated	missense	c.8491	p.Y2831H	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_SUBTILASE_ASP,PatternScan_WD_REPEATS_1	-	no_errors	
DNAH14	127602	genome.wustl.edu	37	1	225140371	225140371	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	225140371	225140371	G	A	SNP	DNAH14	NM_001373	human	genbank	57_37b	+1	validated	splice_site	c.1-1	e1-1	0.074	-	-	-	no_errors	
EIF2C4	192670	genome.wustl.edu	37	1	36298161	36298161	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	36298161	36298161	G	A	SNP	EIF2C4	NM_017629	human	genbank	57_37b	+1	reviewed	missense	c.1369	p.D457N	1.000	NULL	superfamily_PAZ domain,HMMPfam_DUF1785,HMMPfam_PAZ,superfamily_Ribonuclease H-like,HMMPfam_Piwi	-	no_errors	
ENSG00000160229	0	genome.wustl.edu	37	19	20973561	20973563	+	In_Frame_Del	DEL	AAA	AAA	-	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	AAA	AAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	20973561	20973563	AAA	-	DEL	ENSG00000160229	ENST00000425625	human	ensembl	57_37b	+1	known	in_frame_del	c.124_126	p.K44in_frame_del	0.037:0.040:0.042	superfamily_KRAB domain (Kruppel-associated box Pfam 01352)	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_Transposase_22	(deletion:cds_exon[20973438,20973578])	no_errors	
ENSG00000207422	0	genome.wustl.edu	37	6	151936943	151936943	+	RNA	SNP	C	C	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	151936943	151936943	C	A	SNP	ENSG00000207422	ENST00000384691	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	
EPB41L3	23136	genome.wustl.edu	37	18	5445173	5445173	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	5445173	5445173	A	G	SNP	EPB41L3	NM_012307	human	genbank	57_37b	-1	provisional	missense	c.452	p.F151S	1.000	HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N	HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_Second domain of FERM,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like,HMMPfam_FERM_C,HMMPfam_FA,HMMPfam_SAB,HMMPfam_4_1_CTD	-	no_errors	
EPHB4	2050	genome.wustl.edu	37	7	100417260	100417260	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100417260	100417260	C	T	SNP	EPHB4	NM_004444	human	genbank	57_37b	-1	reviewed	missense	c.1216	p.V406I	0.951	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,PatternScan_EGF_2,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_1	-	no_errors	
ERVWE1	30816	genome.wustl.edu	37	7	92099631	92099631	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	92099631	92099631	G	C	SNP	ERVWE1	NM_014590	human	genbank	57_37b	-1	reviewed	missense	c.65	p.P22R	0.513	NULL	HMMPfam_TLV_coat	-	no_errors	
ESF1	51575	genome.wustl.edu	37	20	13698067	13698067	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	13698067	13698067	T	G	SNP	ESF1	NM_016649	human	genbank	57_37b	-1	provisional	missense	c.2210	p.K737T	1.000	NULL	NULL	-	no_errors	
EXT2	2132	genome.wustl.edu	37	11	44228488	44228488	+	Missense_Mutation	SNP	C	C	A	rs75987184	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	44228488	44228488	C	A	SNP	EXT2	NM_000401	human	genbank	57_37b	+1	reviewed	missense	c.1680	p.D560E	0.008	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_64	HMMPfam_Exostosin,superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_64	-		
F5	2153	genome.wustl.edu	37	1	169511128	169511128	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	169511128	169511128	G	A	SNP	F5	NM_000130	human	genbank	57_37b	-1	reviewed	missense	c.3200	p.S1067L	0.091	NULL	superfamily_Cupredoxins,HMMPfam_Cu-oxidase_3,PatternScan_MULTICOPPER_OXIDASE1,HMMPfam_LSPR,superfamily_Galactose-binding domain-like,HMMSmart_SM00231,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2	-	no_errors	
FAM124A	220108	genome.wustl.edu	37	13	51826195	51826195	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	51826195	51826195	C	T	SNP	FAM124A	NM_145019	human	genbank	57_37b	+1	predicted	missense	c.800	p.P267L	0.998	NULL	NULL	-	no_errors	
FAM166A	401565	genome.wustl.edu	37	9	140142119	140142119	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	140142119	140142119	C	T	SNP	FAM166A	NM_001001710	human	genbank	57_37b	-1	predicted	missense	c.49	p.V17I	0.989	HMMPfam_DUF2475	HMMPfam_DUF2475	-	no_errors	
FAM178A	55719	genome.wustl.edu	37	10	102672718	102672718	+	RNA	SNP	T	C	C	rs3802724	byCluster;byFrequency;by1000genomes	TCGA-AO-A124-01	TCGA-AO-A124-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	102672718	102672718	T	C	SNP	FAM178A	NR_024245	human	genbank	57_37b	+1	validated	rna	NULL	NULL	1.000	-	-	-		
FAM98A	25940	genome.wustl.edu	37	2	33810192	33810192	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	33810192	33810192	C	G	SNP	FAM98A	NM_015475	human	genbank	57_37b	-1	validated	missense	c.1208	p.G403A	1.000	NULL	HMMPfam_DUF2465	-	no_errors	
FANCG	2189	genome.wustl.edu	37	9	35078182	35078182	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	35078182	35078182	G	C	SNP	FANCG	NM_004629	human	genbank	57_37b	-1	reviewed	missense	c.466	p.L156V	0.151	NULL	superfamily_TPR-like,HMMSmart_SM00028	-	no_errors	
FCGBP	8857	genome.wustl.edu	37	19	40383993	40383993	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	40383993	40383993	T	A	SNP	FCGBP	NM_003890	human	genbank	57_37b	-1	validated	missense	c.9617	p.N3206I	0.000	superfamily_Cysrich_TIL	HMMSmart_FOLN,HMMSmart_VWD,HMMPfam_VWD,HMMPfam_C8,superfamily_Cysrich_TIL,HMMPfam_TIL,HMMPfam_TIL_assoc,HMMSmart_VWC	-	no_errors	
FCN1	2219	genome.wustl.edu	37	9	137808243	137808243	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	137808243	137808243	C	A	SNP	FCN1	NM_002003	human	genbank	57_37b	-1	reviewed	silent	c.168	p.L56	0.992	HMMPfam_Collagen	HMMPfam_Collagen,HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like,PatternScan_LIPOCALIN,PatternScan_FIBRIN_AG_C_DOMAIN	-	no_errors	
FER1L5	90342	genome.wustl.edu	37	2	97329191	97329196	+	In_Frame_Del	DEL	CAGACC	CAGACC	-	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	CAGACC	CAGACC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	97329191	97329196	CAGACC	-	DEL	FER1L5	NM_001113382	human	genbank	57_37b	+1	provisional	in_frame_del	c.1036_1041	p.QT348in_frame_del	0.006:0.011:0.039:0.022:0.000:0.000	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	HMMSmart_SM00239,HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerI,HMMPfam_FerB,HMMSmart_SM00693,HMMSmart_SM00694	(deletion:cds_exon[97329176,97329244])	no_errors	
FKBP1AP1	0	genome.wustl.edu	37	19	58338180	58338180	+	RNA	SNP	G	A	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	58338180	58338180	G	A	SNP	FKBP1AP1	ENST00000500979	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	
FKBPL	63943	genome.wustl.edu	37	6	32097227	32097227	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	32097227	32097227	G	C	SNP	FKBPL	NM_022110	human	genbank	57_37b	-1	reviewed	missense	c.331	p.R111G	0.002	superfamily_SSF54534	superfamily_SSF54534,superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR	-	no_errors	
FLJ32810	143872	genome.wustl.edu	37	11	100792303	100792303	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	100792303	100792303	C	G	SNP	FLJ32810	NM_152432	human	genbank	57_37b	+1	provisional	missense	c.565	p.Q189E	1.000	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,PatternScan_IG_MHC	-	no_errors	
FRS3	10817	genome.wustl.edu	37	6	41738737	41738737	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	41738737	41738737	C	T	SNP	FRS3	NM_006653	human	genbank	57_37b	-1	reviewed	missense	c.1099	p.E367K	1.000	NULL	superfamily_SSF50729,HMMPfam_IRS,HMMSmart_PTBI	-	no_errors	
FSCN3	29999	genome.wustl.edu	37	7	127235672	127235672	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	127235672	127235672	C	A	SNP	FSCN3	NM_020369	human	genbank	57_37b	+1	provisional	silent	c.456	p.I152	0.006	superfamily_Actin_crosslink	superfamily_Actin_crosslink,HMMPfam_Fascin	-	no_errors	
GCN1L1	10985	genome.wustl.edu	37	12	120565720	120565720	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	120565720	120565720	C	T	SNP	GCN1L1	NM_006836	human	genbank	57_37b	-1	validated	missense	c.7949	p.R2650K	1.000	NULL	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors	
GIMAP2	26157	genome.wustl.edu	37	7	150389497	150389497	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150389497	150389497	C	T	SNP	GIMAP2	NM_015660	human	genbank	57_37b	+1	reviewed	silent	c.123	p.S41	1.000	superfamily_SSF52540,HMMPfam_AIG1	superfamily_SSF52540,HMMPfam_AIG1	-	no_errors	
GLI3	2737	genome.wustl.edu	37	7	42088133	42088133	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	42088133	42088133	C	T	SNP	GLI3	NM_000168	human	genbank	57_37b	-1	reviewed	silent	c.636	p.S212	0.996	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
HECW1	23072	genome.wustl.edu	37	7	43601517	43601517	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	43601517	43601517	C	A	SNP	HECW1	NM_015052	human	genbank	57_37b	+1	validated	missense	c.4813	p.L1605I	1.000	HMMSmart_HECTc,HMMPfam_HECT	HMMSmart_C2,superfamily_C2_CaLB,HMMPfam_C2,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	-	no_errors	
HELZ	9931	genome.wustl.edu	37	17	65082989	65082989	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	65082989	65082989	G	T	SNP	HELZ	NM_014877	human	genbank	57_37b	-1	validated	missense	c.5450	p.P1817Q	1.000	NULL	superfamily_SSF90229,HMMSmart_ZnF_C3H1,HMMPfam_zf-CCCH,superfamily_SSF52540,HMMPfam_PAM2	-	no_errors	
HIPK1	204851	genome.wustl.edu	37	1	114483129	114483129	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	114483129	114483129	T	G	SNP	HIPK1	NM_198268	human	genbank	57_37b	+1	reviewed	missense	c.124	p.Y42D	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
HK3	3101	genome.wustl.edu	37	5	176314639	176314639	+	Silent	SNP	G	A	A	rs6875296	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	176314639	176314639	G	A	SNP	HK3	NM_002115	human	genbank	57_37b	-1	reviewed	silent	c.1413	p.A471	0.036	HMMPfam_Hexokinase_2,superfamily_SSF53067	superfamily_SSF53067,HMMPfam_Hexokinase_1,HMMPfam_Hexokinase_2,PatternScan_HEXOKINASES	-		
HLA-A	3105	genome.wustl.edu	37	6	29910378	29910378	+	Silent	SNP	C	C	T	rs116698226	by1000genomes	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	29910378	29910378	C	T	SNP	HLA-A	NM_002116	human	genbank	57_37b	+1	reviewed	silent	c.48	p.A16	0.000	NULL	HMMPfam_MHC_I,PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,HMMPfam_MHC_I_C,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin	-		
HMGXB3	22993	genome.wustl.edu	37	5	149425158	149425158	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	149425158	149425158	G	C	SNP	HMGXB3	NM_014983	human	genbank	57_37b	+1	validated	missense	c.2860	p.V954L	1.000	NULL	superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box	-	no_errors	
HSPA12A	259217	genome.wustl.edu	37	10	118434446	118434446	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	118434446	118434446	C	T	SNP	HSPA12A	NM_025015	human	genbank	57_37b	-1	validated	missense	c.1874	p.R625H	1.000	NULL	PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_SSF53067	-	no_errors	
HTR5A	3361	genome.wustl.edu	37	7	154863184	154863184	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	154863184	154863184	G	T	SNP	HTR5A	NM_024012	human	genbank	57_37b	+1	reviewed	missense	c.575	p.C192F	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
IER5	51278	genome.wustl.edu	37	1	181058077	181058077	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	181058077	181058077	C	A	SNP	IER5	NM_016545	human	genbank	57_37b	+1	validated	silent	c.39	p.I13	1.000	HMMPfam_IER	HMMPfam_IER	-	no_errors	
IFT80	57560	genome.wustl.edu	37	3	159997110	159997110	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	159997110	159997110	A	C	SNP	IFT80	NM_020800	human	genbank	57_37b	-1	validated	missense	c.1707	p.N569K	1.000	NULL	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,superfamily_Cyt_cd1_haem_C	-	no_errors	
KIF24	55265	genome.wustl.edu	37	9	34269280	34269280	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	34269280	34269280	G	T	SNP	KIF24	NM_194313	human	genbank	57_37b	-1	validated	missense	c.1418	p.A473E	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin	HMMPfam_SAM_1,superfamily_SAM/Pointed domain,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors	
KRT2	3849	genome.wustl.edu	37	12	53042093	53042093	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	53042093	53042093	G	A	SNP	KRT2	NM_000423	human	genbank	57_37b	-1	reviewed	missense	c.986	p.T329I	0.867	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors	
LEPR	3953	genome.wustl.edu	37	1	66036458	66036458	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	66036458	66036458	G	A	SNP	LEPR	NM_002303	human	genbank	57_37b	+1	reviewed	missense	c.343	p.V115I	0.058	NULL	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_HEMATOPO_REC_S_F1,HMMPfam_Lep_receptor_Ig,PatternScan_HEMATOPO_REC_L_F2	-	no_errors	
LMAN2	10960	genome.wustl.edu	37	5	176778492	176778492	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	176778492	176778492	G	A	SNP	LMAN2	NM_006816	human	genbank	57_37b	-1	reviewed	missense	c.157	p.H53Y	1.000	superfamily_ConA_like_lec_gl,HMMPfam_Lectin_leg-like	superfamily_ConA_like_lec_gl,HMMPfam_Lectin_leg-like	-	no_errors	
LOC100128859	0	genome.wustl.edu	37	6	74079804	74079804	+	Missense_Mutation	SNP	G	T	T	rs12214703	byCluster;byFrequency;by1000genomes	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	74079804	74079804	G	T	SNP	LOC100128859	XM_001714576	human	genbank	57_37b	+1	model	missense	c.458	p.R153L	0.000	NULL	NULL	-		
LOC100287822	0	genome.wustl.edu	37	1	179153697	179153697	+	RNA	SNP	G	G	A	rs2636293	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	179153697	179153697	G	A	SNP	LOC100287822	XR_078231	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.997	-	-	-		
LOC100289470	0	genome.wustl.edu	37	5	178949669	178949669	+	Silent	SNP	A	A	G	rs28713706	byCluster;by1000genomes	TCGA-AO-A124-01	TCGA-AO-A124-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	178949669	178949669	A	G	SNP	LOC100289470	XM_002342585	human	genbank	57_37b	+1	model	silent	c.186	p.P62	0.000	NULL	NULL	-		
LOC642661	642661	genome.wustl.edu	37	14	19719844	19719844	+	RNA	SNP	G	G	A	rs28594831	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	19719844	19719844	G	A	SNP	LOC642661	XR_016132	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.975	-	-	-		
LRIT2	340745	genome.wustl.edu	37	10	85984799	85984799	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	85984799	85984799	C	T	SNP	LRIT2	NM_001017924	human	genbank	57_37b	-1	validated	missense	c.182	p.R61K	1.000	superfamily_SSF52058	HMMPfam_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2	-	no_errors	
LRRC27	80313	genome.wustl.edu	37	10	134151186	134151186	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	134151186	134151186	A	G	SNP	LRRC27	NM_001143757	human	genbank	57_37b	+1	validated	missense	c.328	p.I110V	0.950	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1	-	no_errors	
LRRC33	375387	genome.wustl.edu	37	3	196386964	196386964	+	Silent	SNP	C	C	G	rs1798631	byCluster;byHapMap;by1000genomes	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	196386964	196386964	C	G	SNP	LRRC33	NM_198565	human	genbank	57_37b	+1	provisional	silent	c.450	p.A150	0.004	superfamily_SSF52058,HMMPfam_LRR_1	superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP	-		
LRRC37A	9884	genome.wustl.edu	37	17	44415042	44415042	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	44415042	44415042	G	T	SNP	LRRC37A	NM_014834	human	genbank	57_37b	+1	validated	missense	c.5056	p.D1686Y	0.122	NULL	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1	-	no_errors	
LRRC7	57554	genome.wustl.edu	37	1	70460297	70460297	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	70460297	70460297	C	A	SNP	LRRC7	NM_020794	human	genbank	57_37b	+1	validated	missense	c.871	p.L291I	0.152	superfamily_L domain-like,superfamily_RNI-like,HMMSmart_SM00364,HMMSmart_SM00369,HMMSmart_SM00365,HMMPfam_LRR_1	superfamily_L domain-like,HMMSmart_SM00364,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_RNI-like,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors	
LRRK1	79705	genome.wustl.edu	37	15	101567954	101567954	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	101567954	101567954	G	T	SNP	LRRK1	NM_024652	human	genbank	57_37b	+1	validated	nonsense	c.2638	p.E880*	1.000	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_L domain-like,HMMSmart_SM00364,HMMSmart_SM00369,HMMPfam_LRR_1,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Miro,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220	-	no_errors	
LRRTM1	347730	genome.wustl.edu	37	2	80529665	80529665	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	80529665	80529665	T	A	SNP	LRRTM1	NM_178839	human	genbank	57_37b	-1	validated	missense	c.1280	p.K427M	1.000	NULL	HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP	-	no_errors	
LSM14B	149986	genome.wustl.edu	37	20	60705737	60705737	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	60705737	60705737	G	T	SNP	LSM14B	NM_144703	human	genbank	57_37b	+1	validated	silent	c.825	p.L275	1.000	NULL	HMMPfam_DFDF,HMMPfam_FFD_TFG	-	no_errors	
LYST	1130	genome.wustl.edu	37	1	235909818	235909828	+	Frame_Shift_Del	DEL	TTTCGAGGACC	TTTCGAGGACC	-	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	TTTCGAGGACC	TTTCGAGGACC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	235909818	235909828	TTTCGAGGACC	-	DEL	LYST	NM_000081	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.7790_7781	p.G2594fs	0.996:0.995:0.820:0.998:0.998:0.998:1.000:0.999:0.998:1.000	NULL	PatternScan_COPPER_BLUE,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	(deletion:cds_exon[235909636,235909827], intron[235909828,235914509])	no_errors	
MAN1A1	4121	genome.wustl.edu	37	6	119501033	119501033	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	119501033	119501033	A	G	SNP	MAN1A1	NM_005907	human	genbank	57_37b	-1	reviewed	missense	c.1913	p.L638P	1.000	superfamily_Glyco_hydro_47,HMMPfam_Glyco_hydro_47	superfamily_Glyco_hydro_47,HMMPfam_Glyco_hydro_47	-	no_errors	
MAP2K2	5605	genome.wustl.edu	37	19	4117473	4117473	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	4117473	4117473	C	T	SNP	MAP2K2	NM_030662	human	genbank	57_37b	-1	reviewed	missense	c.247	p.G83S	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
MCOLN1	57192	genome.wustl.edu	37	19	7589918	7589918	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	7589918	7589918	C	A	SNP	MCOLN1	NM_020533	human	genbank	57_37b	+1	reviewed	missense	c.103	p.P35T	0.015	NULL	HMMPfam_Ion_trans	-	no_errors	
MED13	9969	genome.wustl.edu	37	17	60087928	60087928	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	60087928	60087928	A	T	SNP	MED13	NM_005121	human	genbank	57_37b	-1	reviewed	missense	c.1950	p.S650R	1.000	NULL	HMMPfam_TRAP_240kDa	-	no_errors	
MEST	4232	genome.wustl.edu	37	7	130140628	130140628	+	Splice_Site	SNP	A	C	C	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	130140628	130140628	A	C	SNP	MEST	NM_002402	human	genbank	57_37b	+1	reviewed	splice_site	c.648-2	e9-2	1.000	-	-	-	no_errors	
MGC13005	84771	genome.wustl.edu	37	2	114357862	114357862	+	RNA	SNP	C	C	T	rs115400373	by1000genomes	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	114357862	114357862	C	T	SNP	MGC13005	NR_024004	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-		
MIB1	57534	genome.wustl.edu	37	18	19438538	19438538	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	19438538	19438538	C	G	SNP	MIB1	NM_020774	human	genbank	57_37b	+1	validated	missense	c.2811	p.D937E	1.000	NULL	PatternScan_ZF_RING_1,HMMPfam_MIB_HERC2,HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4	-	no_errors	
MICAL1	64780	genome.wustl.edu	37	6	109766449	109766449	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	109766449	109766449	C	G	SNP	MICAL1	NM_022765	human	genbank	57_37b	-1	validated	missense	c.2832	p.E944D	0.950	NULL	superfamily_FAD/NAD(P)-binding domain,HMMPfam_FAD_binding_3,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	no_errors	
MIR670	0	genome.wustl.edu	37	11	43581217	43581217	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	43581217	43581217	G	A	SNP	MIR670	ENST00000390142	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	
MKRN1	23608	genome.wustl.edu	37	7	140154472	140154472	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	140154472	140154472	A	T	SNP	MKRN1	NM_013446	human	genbank	57_37b	-1	validated	missense	c.1294	p.F432I	1.000	NULL	superfamily_CCCH zinc finger,HMMSmart_SM00356,HMMPfam_zf-CCCH,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors	
MNDA	4332	genome.wustl.edu	37	1	158818988	158818988	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158818988	158818988	G	-	DEL	MNDA	NM_002432	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1185	p.A396fs	0.105	NULL	HMMPfam_PAAD_DAPIN,HMMPfam_HIN	(deletion:cds_exon[158818980,158819027])	no_errors	
MUC16	94025	genome.wustl.edu	37	19	9050021	9050021	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9050021	9050021	G	A	SNP	MUC16	NM_024690	human	genbank	57_37b	-1	validated	missense	c.31610	p.T10537M	0.000	NULL	PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors	
MUC16	94025	genome.wustl.edu	37	19	9087467	9087467	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9087467	9087467	G	T	SNP	MUC16	NM_024690	human	genbank	57_37b	-1	validated	missense	c.4348	p.Q1450K	0.200	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors	
MYBL2	4605	genome.wustl.edu	37	20	42343796	42343796	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	42343796	42343796	C	A	SNP	MYBL2	NM_002466	human	genbank	57_37b	+1	reviewed	missense	c.1847	p.S616Y	0.039	HMMPfam_Cmyb_C	HMMSmart_SM00717,HMMPfam_Myb_DNA-binding,superfamily_Homeodomain-like,HMMPfam_Cmyb_C	-	no_errors	
MYH14	79784	genome.wustl.edu	37	19	50805047	50805047	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50805047	50805047	C	A	SNP	MYH14	NM_001077186	human	genbank	57_37b	+1	reviewed	missense	c.5500	p.R1834S	0.997	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_Myosin_tail_1,superfamily_Prefoldin	-	no_errors	
MYH6	4624	genome.wustl.edu	37	14	23874978	23874978	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	23874978	23874978	G	A	SNP	MYH6	NM_002471	human	genbank	57_37b	-1	validated	missense	c.203	p.T68M	1.000	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,superfamily_Prefoldin,HMMPfam_Myosin_tail_1	-	no_errors	
MYOM1	8736	genome.wustl.edu	37	18	3094191	3094191	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	3094191	3094191	C	G	SNP	MYOM1	NM_003803	human	genbank	57_37b	-1	reviewed	missense	c.3841	p.E1281Q	1.000	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_V-set	-	no_errors	
NBEAL2	23218	genome.wustl.edu	37	3	47043538	47043538	+	Missense_Mutation	SNP	C	T	T	rs2305634	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	47043538	47043538	C	T	SNP	NBEAL2	ENST00000416683	human	ensembl	57_37b	+1	known	missense	c.2774	p.P925L	0.000	NULL	superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-		
NBPF14	25832	genome.wustl.edu	37	1	148004597	148004597	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	148004597	148004597	A	T	SNP	NBPF14	NM_015383	human	genbank	57_37b	-1	predicted	missense	c.2717	p.V906E	0.000	NULL	HMMPfam_DUF1220	-	no_errors	
NLRP8	126205	genome.wustl.edu	37	19	56485096	56485096	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	56485096	56485096	C	G	SNP	NLRP8	NM_176811	human	genbank	57_37b	+1	provisional	missense	c.2613	p.H871Q	0.773	superfamily_RNI-like,HMMSmart_SM00368	superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368	-	no_errors	
NR6A1	2649	genome.wustl.edu	37	9	127316795	127316795	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	127316795	127316795	C	T	SNP	NR6A1	NM_033334	human	genbank	57_37b	-1	reviewed	missense	c.197	p.R66H	0.999	HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1	HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors	
OBSCN	84033	genome.wustl.edu	37	1	228503574	228503574	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	228503574	228503574	G	C	SNP	OBSCN	NM_001098623	human	genbank	57_37b	+1	reviewed	missense	c.13039	p.E4347Q	1.000	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_V-set,HMMSmart_SM00015,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
ODZ1	10178	genome.wustl.edu	37	X	123630946	123630946	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	123630946	123630946	A	G	SNP	ODZ1	NM_014253	human	genbank	57_37b	-1	reviewed	silent	c.3615	p.D1205	1.000	superfamily_SSF101898,HMMPfam_NHL	HMMPfam_Ten_N,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF,superfamily_SSF57196,superfamily_SSF101898,HMMPfam_NHL,superfamily_N2O_reductase_N,HMMPfam_RHS_repeat	-	no_errors	
OR13G1	441933	genome.wustl.edu	37	1	247836055	247836055	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	247836055	247836055	G	T	SNP	OR13G1	NM_001005487	human	genbank	57_37b	-1	provisional	missense	c.289	p.Q97K	0.959	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
OR5B17	219965	genome.wustl.edu	37	11	58125977	58125977	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	58125977	58125977	T	C	SNP	OR5B17	NM_001005489	human	genbank	57_37b	-1	validated	missense	c.566	p.E189G	0.906	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR6K2	81448	genome.wustl.edu	37	1	158669493	158669493	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158669493	158669493	G	T	SNP	OR6K2	NM_001005279	human	genbank	57_37b	-1	provisional	missense	c.950	p.P317Q	0.001	NULL	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors	
PCYT1B	9468	genome.wustl.edu	37	X	24608286	24608286	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	24608286	24608286	T	C	SNP	PCYT1B	NM_004845	human	genbank	57_37b	-1	reviewed	missense	c.340	p.S114G	1.000	superfamily_Nucleotidylyl transferase,HMMPfam_CTP_transf_2	superfamily_Nucleotidylyl transferase,HMMPfam_CTP_transf_2	-	no_errors	
PKD1	5310	genome.wustl.edu	37	16	2152129	2152129	+	Silent	SNP	A	G	G	rs79276175	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2152129	2152129	A	G	SNP	PKD1	NM_001009944	human	genbank	57_37b	-1	reviewed	silent	c.9330	p.P3110	0.001	NULL	HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_PKD,HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_Lectin_C,HMMSmart_SM00034,HMMPfam_LRR_1,HMMPfam_REJ,HMMPfam_WSC,HMMSmart_SM00369,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel,HMMSmart_SM00321,superfamily_C-type lectin-like,superfamily_L domain-like	-		
PLEKHA5	54477	genome.wustl.edu	37	12	19511185	19511185	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	19511185	19511185	A	G	SNP	PLEKHA5	NM_019012	human	genbank	57_37b	+1	validated	silent	c.2664	p.E888	0.047	NULL	superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors	
PRICKLE1	144165	genome.wustl.edu	37	12	42853647	42853647	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	42853647	42853647	T	G	SNP	PRICKLE1	NM_001144881	human	genbank	57_37b	-1	reviewed	missense	c.2460	p.K820N	1.000	NULL	HMMPfam_PET,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_SSF57716	-	no_errors	
PRPF4B	8899	genome.wustl.edu	37	6	4032461	4032461	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	4032461	4032461	G	C	SNP	PRPF4B	NM_003913	human	genbank	57_37b	+1	reviewed	missense	c.710	p.R237T	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
PXDNL	137902	genome.wustl.edu	37	8	52287255	52287255	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	52287255	52287255	G	A	SNP	PXDNL	NM_144651	human	genbank	57_37b	-1	validated	silent	c.3594	p.P1198	0.571	superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase	superfamily_L domain-like,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1	-	no_errors	
RARRES1	5918	genome.wustl.edu	37	3	158431599	158431600	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	158431599	158431600	-	T	INS	RARRES1	NM_206963	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.326_325	p.R109fs	0.001:0.000	HMMPfam_Latexin	HMMPfam_Latexin	-	no_errors	
RC3H1	149041	genome.wustl.edu	37	1	173916616	173916616	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	173916616	173916616	C	G	SNP	RC3H1	NM_172071	human	genbank	57_37b	-1	validated	silent	c.2628	p.V876	0.077	NULL	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,superfamily_CCCH zinc finger,HMMSmart_SM00356,HMMPfam_zf-CCCH	-	no_errors	
RNF26	79102	genome.wustl.edu	37	11	119206393	119206393	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	119206393	119206393	C	T	SNP	RNF26	NM_032015	human	genbank	57_37b	+1	reviewed	silent	c.561	p.F187	0.991	NULL	superfamily_RING/U-box,HMMPfam_zf-C3HC4	-	no_errors	
RNPC3	55599	genome.wustl.edu	37	1	104068843	104068843	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	104068843	104068843	G	C	SNP	RNPC3	NM_017619	human	genbank	57_37b	+1	reviewed	missense	c.151	p.G51R	1.000	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors	
ROBO1	6091	genome.wustl.edu	37	3	78737828	78737828	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	78737828	78737828	T	A	SNP	ROBO1	NM_002941	human	genbank	57_37b	-1	reviewed	silent	c.1140	p.P380	1.000	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
RPTOR	57521	genome.wustl.edu	37	17	78811786	78811786	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	78811786	78811786	A	T	SNP	RPTOR	NM_020761	human	genbank	57_37b	+1	reviewed	missense	c.1201	p.T401S	1.000	NULL	superfamily_ARM repeat,HMMPfam_HEAT,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors	
RYR2	6262	genome.wustl.edu	37	1	237801707	237801707	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	237801707	237801707	G	A	SNP	RYR2	NM_001035	human	genbank	57_37b	+1	reviewed	silent	c.6843	p.V2281	0.080	HMMPfam_RYDR_ITPR	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors	
RYR2	6262	genome.wustl.edu	37	1	237947615	237947615	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	237947615	237947615	G	T	SNP	RYR2	NM_001035	human	genbank	57_37b	+1	reviewed	missense	c.12603	p.Q4201H	1.000	NULL	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors	
RYR3	6263	genome.wustl.edu	37	15	34034597	34034597	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	34034597	34034597	C	G	SNP	RYR3	NM_001036	human	genbank	57_37b	+1	validated	missense	c.7851	p.I2617M	0.203	HMMPfam_RyR	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,HMMPfam_efhand,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors	
SHE	126669	genome.wustl.edu	37	1	154458425	154458425	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	154458425	154458425	G	A	SNP	SHE	NM_001010846	human	genbank	57_37b	-1	provisional	missense	c.1295	p.A432V	1.000	superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2	superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2	-	no_errors	
SIGLEC6	946	genome.wustl.edu	37	19	52034507	52034507	+	Silent	SNP	G	T	T	rs78225194	byCluster;byFrequency;by1000genomes	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	52034507	52034507	G	T	SNP	SIGLEC6	NM_001245	human	genbank	57_37b	-1	validated	silent	c.334	p.R112	0.000	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMPfam_ig,HMMPfam_I-set,HMMSmart_SM00408,PatternScan_IG_MHC	-		
SLC28A3	64078	genome.wustl.edu	37	9	86902989	86902989	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	86902989	86902989	G	T	SNP	SLC28A3	NM_022127	human	genbank	57_37b	-1	provisional	silent	c.1254	p.L418	0.930	HMMPfam_Nucleos_tra2_C	HMMPfam_Nucleos_tra2_N,HMMPfam_Gate,HMMPfam_Nucleos_tra2_C	-	no_errors	
SLC30A1	7779	genome.wustl.edu	37	1	211751857	211751857	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	211751857	211751857	G	A	SNP	SLC30A1	NM_021194	human	genbank	57_37b	-1	validated	missense	c.98	p.S33L	0.998	HMMPfam_Cation_efflux	HMMPfam_Cation_efflux	-	no_errors	
SLC44A3	126969	genome.wustl.edu	37	1	95330335	95330335	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	95330335	95330335	G	C	SNP	SLC44A3	NM_001114106	human	genbank	57_37b	+1	validated	silent	c.1275	p.S425	0.005	HMMPfam_DUF580	HMMPfam_DUF580	-	no_errors	
SLC9A2	6549	genome.wustl.edu	37	2	103321040	103321040	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	103321040	103321040	C	G	SNP	SLC9A2	NM_003048	human	genbank	57_37b	+1	validated	missense	c.1883	p.T628R	0.987	NULL	HMMPfam_Na_H_Exchanger	-	no_errors	
SMARCA2	6595	genome.wustl.edu	37	9	2058393	2058393	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	2058393	2058393	C	G	SNP	SMARCA2	NM_003070	human	genbank	57_37b	+1	reviewed	missense	c.1450	p.H484D	1.000	HMMPfam_HSA,HMMSmart_SM00573	HMMPfam_QLQ,HMMPfam_HSA,HMMSmart_SM00573,HMMPfam_BRK,HMMSmart_SM00592,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors	
SNAP91	9892	genome.wustl.edu	37	6	84324580	84324580	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	84324580	84324580	C	T	SNP	SNAP91	NM_014841	human	genbank	57_37b	-1	validated	missense	c.880	p.E294K	1.000	NULL	superfamily_ENTH/VHS domain,HMMPfam_ANTH,HMMSmart_SM00273,superfamily_GAT-like domain	-	no_errors	
SPTA1	6708	genome.wustl.edu	37	1	158646004	158646004	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158646004	158646004	C	A	SNP	SPTA1	NM_003126	human	genbank	57_37b	-1	reviewed	missense	c.1039	p.D347Y	1.000	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_EF-hand,HMMPfam_efhand_Ca_insen	-	no_errors	
SPTBN1	6711	genome.wustl.edu	37	2	54859818	54859818	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	54859818	54859818	C	G	SNP	SPTBN1	NM_003128	human	genbank	57_37b	+1	reviewed	missense	c.3680	p.A1227G	0.992	HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors	
SRMS	6725	genome.wustl.edu	37	20	62178623	62178623	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	62178623	62178623	C	T	SNP	SRMS	NM_080823	human	genbank	57_37b	-1	provisional	missense	c.194	p.R65Q	0.508	superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_2	superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_2,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
STAC2	342667	genome.wustl.edu	37	17	37369302	37369302	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	37369302	37369302	G	C	SNP	STAC2	NM_198993	human	genbank	57_37b	-1	validated	missense	c.1077	p.C359W	0.994	superfamily_SH3-domain,HMMPfam_SH3_2	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_SH3_2	-	no_errors	
SYNE1	23345	genome.wustl.edu	37	6	152546921	152546921	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	152546921	152546921	C	G	SNP	SYNE1	NM_182961	human	genbank	57_37b	-1	reviewed	missense	c.21286	p.V7096L	0.992	HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,HMMPfam_Spectrin,HMMPfam_KASH	-	no_errors	
SYNGR4	23546	genome.wustl.edu	37	19	48879377	48879377	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	48879377	48879377	A	T	SNP	SYNGR4	NM_012451	human	genbank	57_37b	+1	reviewed	silent	c.507	p.R169	0.000	HMMPfam_MARVEL	HMMPfam_MARVEL	-	no_errors	
TAF1	6872	genome.wustl.edu	37	X	70604808	70604808	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	70604808	70604808	A	G	SNP	TAF1	NM_004606	human	genbank	57_37b	+1	reviewed	missense	c.2195	p.D732G	1.000	NULL	HMMPfam_TBP-binding,superfamily_TAF_II_230,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors	
TBCCD1	55171	genome.wustl.edu	37	3	186272045	186272045	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	186272045	186272045	T	G	SNP	TBCCD1	NM_001134415	human	genbank	57_37b	-1	validated	silent	c.1542	p.T514	1.000	NULL	HMMPfam_TBCC,HMMSmart_CARP	-	no_errors	
TBX18	9096	genome.wustl.edu	37	6	85457662	85457662	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	85457662	85457662	G	T	SNP	TBX18	NM_001080508	human	genbank	57_37b	-1	provisional	silent	c.915	p.T305	0.975	superfamily_P53_like_DNA_bnd,HMMSmart_TBOX,HMMPfam_T-box	superfamily_P53_like_DNA_bnd,HMMSmart_TBOX,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2	-	no_errors	
TMEM214	54867	genome.wustl.edu	37	2	27255983	27255983	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	27255983	27255983	A	G	SNP	TMEM214	NM_017727	human	genbank	57_37b	+1	validated	missense	c.100	p.N34D	0.988	NULL	HMMPfam_DUF2359	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7578212	7578212	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578212	7578212	G	A	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	nonsense	c.637	p.R213*	0.893	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
TRIM41	90933	genome.wustl.edu	37	5	180661772	180661772	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	180661772	180661772	T	C	SNP	TRIM41	NM_033549	human	genbank	57_37b	+1	validated	silent	c.1890	p.P630	0.994	HMMSmart_SM00449	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449	-	no_errors	
TRIM56	81844	genome.wustl.edu	37	7	100730642	100730642	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100730642	100730642	G	T	SNP	TRIM56	NM_030961	human	genbank	57_37b	+1	provisional	missense	c.49	p.D17Y	0.954	superfamily_RING/U-box	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_NHL repeat	-	no_errors	
TTC28	23331	genome.wustl.edu	37	22	29025722	29025722	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	29025722	29025722	G	T	SNP	TTC28	NM_001145418	human	genbank	57_37b	-1	validated	missense	c.199	p.Q67K	1.000	HMMSmart_TPR,superfamily_SSF48452	HMMSmart_TPR,superfamily_SSF48452,HMMPfam_TPR_1,HMMPfam_TPR_2	-	no_errors	
WDFY4	0	genome.wustl.edu	37	10	50022127	50022127	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	50022127	50022127	G	C	SNP	WDFY4	NM_020945	human	genbank	57_37b	+1	validated	missense	c.5340	p.Q1780H	1.000	NULL	superfamily_ARM repeat,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
YSK4	80122	genome.wustl.edu	37	2	135744731	135744731	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	135744731	135744731	T	G	SNP	YSK4	NM_025052	human	genbank	57_37b	-1	validated	missense	c.1711	p.T571P	0.085	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
ZBBX	79740	genome.wustl.edu	37	3	167023671	167023671	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	167023671	167023671	T	A	SNP	ZBBX	NM_024687	human	genbank	57_37b	-1	validated	missense	c.1485	p.K495N	0.000	NULL	HMMPfam_zf-B_box	-	no_errors	
ZC3HAV1	56829	genome.wustl.edu	37	7	138732379	138732379	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	138732379	138732379	C	A	SNP	ZC3HAV1	NM_020119	human	genbank	57_37b	-1	reviewed	silent	c.2670	p.V890	1.000	superfamily_ADP-ribosylation,HMMPfam_PARP	HMMPfam_zf-CCCH,superfamily_ADP-ribosylation,HMMPfam_PARP	-	no_errors	
ZNF761	388561	genome.wustl.edu	37	19	53959355	53959355	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	53959355	53959355	A	T	SNP	ZNF761	NM_001008401	human	genbank	57_37b	+1	validated	missense	c.1594	p.S532C	0.010	superfamily_Multiheme cytochromes,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Multiheme cytochromes	-	no_errors	
ZNF761	388561	genome.wustl.edu	37	19	53959652	53959652	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	53959652	53959652	G	A	SNP	ZNF761	NM_001008401	human	genbank	57_37b	+1	validated	missense	c.1891	p.E631K	1.000	superfamily_Multiheme cytochromes	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_Multiheme cytochromes,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	
ZNF783	155060	genome.wustl.edu	37	7	148963924	148963924	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A124-01	TCGA-AO-A124-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	148963924	148963924	C	T	SNP	ZNF783	ENST00000434415	human	ensembl	57_37b	+1	known	silent	c.435	p.F145	0.999	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
