Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ACOXL	55289	genome.wustl.edu	37	2	111806831	111806831	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	111806831	111806831	G	T	SNP	ACOXL	NM_001142807	human	genbank	57_37b	+1	validated	missense	c.1406	p.C469F	0.679	superfamily_Acyl-CoA dehydrogenase C-terminal domain-like,HMMPfam_ACOX	superfamily_Acyl-CoA dehydrogenase NM domain-like,HMMPfam_Acyl-CoA_dh_M,HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like,HMMPfam_ACOX	-	no_errors	
ADAM21	8747	genome.wustl.edu	37	14	70924295	70924295	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	70924295	70924295	G	A	SNP	ADAM21	NM_003813	human	genbank	57_37b	+1	reviewed	missense	c.79	p.G27S	0.000	HMMPfam_Pep_M12B_propep	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,PatternScan_ZINC_PROTEASE,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR,PatternScan_EGF_2"	-	no_errors	
API5	8539	genome.wustl.edu	37	11	43352111	43352111	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	43352111	43352111	C	G	SNP	API5	NM_001142930	human	genbank	57_37b	+1	validated	missense	c.1275	p.I425M	1.000	HMMPfam_API5,superfamily_ARM-type_fold	HMMPfam_API5,superfamily_ARM-type_fold	-	no_errors	
ASMTL	8623	genome.wustl.edu	37	X	1540689	1540689	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	1540689	1540689	G	A	SNP	ASMTL	NM_004192	human	genbank	57_37b	-1	validated	silent	c.1107	p.G369	0.790	HMMPfam_Methyltransf_2	"superfamily_Maf/Ham1,HMMPfam_Maf,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Methyltransf_2,superfamily_S-adenosyl-L-methionine-dependent methyltransferases"	-	no_errors	
BRD8	10902	genome.wustl.edu	37	5	137476527	137476527	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	137476527	137476527	C	T	SNP	BRD8	NM_139199	human	genbank	57_37b	-1	reviewed	missense	c.3482	p.R1161Q	0.120	superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain	superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain	-	no_errors	
C14orf159	80017	genome.wustl.edu	37	14	91636395	91636395	+	Silent	SNP	C	C	T	rs4900071	byCluster;byFrequency;by1000genomes	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	91636395	91636395	C	T	SNP	C14orf159	NM_001102368	human	genbank	57_37b	+1	validated	silent	c.306	p.G102	0.096	NULL	HMMPfam_DUF1445	-		
C5orf25	375484	genome.wustl.edu	37	5	175763760	175763760	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	175763760	175763760	C	T	SNP	C5orf25	NM_198567	human	genbank	57_37b	+1	validated	missense	c.907	p.R303C	1.000	NULL	NULL	-	no_errors	
CCDC52	152185	genome.wustl.edu	37	3	113176140	113176140	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	113176140	113176140	G	A	SNP	CCDC52	NM_144718	human	genbank	57_37b	-1	validated	silent	c.1500	p.F500	0.001	NULL	NULL	-	no_errors	
CD1A	909	genome.wustl.edu	37	1	158225118	158225118	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158225118	158225118	C	T	SNP	CD1A	NM_001763	human	genbank	57_37b	+1	reviewed	silent	c.303	p.Y101	0.000	HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog	HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog,superfamily_SSF48726,HMMPfam_C1-set,HMMSmart_IGc1	-	no_errors	
CDC42BPA	8476	genome.wustl.edu	37	1	227235647	227235647	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	227235647	227235647	G	C	SNP	CDC42BPA	NM_003607	human	genbank	57_37b	-1	reviewed	nonsense	c.2969	p.S990*	0.996	superfamily_SSF57889	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C,HMMPfam_DMPK_coil,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,PatternScan_C_TYPE_LECTIN_1,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_CNH,HMMSmart_CNH,HMMSmart_PBD	-	no_errors	
CDKL5	6792	genome.wustl.edu	37	X	18593511	18593511	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	18593511	18593511	T	G	SNP	CDKL5	NM_001037343	human	genbank	57_37b	+1	reviewed	silent	c.183	p.L61	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
CNOT1	23019	genome.wustl.edu	37	16	58610448	58610448	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	58610448	58610448	T	C	SNP	CNOT1	NM_016284	human	genbank	57_37b	-1	validated	silent	c.1623	p.A541	0.504	NULL	HMMPfam_Not1,PatternScan_LECTIN_LEGUME_BETA	-	no_errors	
CPNE1	8904	genome.wustl.edu	37	20	34220172	34220172	+	Splice_Site	SNP	T	T	C	rs113306960	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	34220172	34220172	T	C	SNP	CPNE1	ENST00000439669	human	ensembl	57_37b	-1	known	splice_site	c.385-2	e4-2	0.001	-	-	-		
DALRD3	55152	genome.wustl.edu	37	3	49053694	49053694	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49053694	49053694	C	T	SNP	DALRD3	NM_001009996	human	genbank	57_37b	-1	validated	missense	c.1226	p.R409H	0.998	superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_DALR_1	superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_DALR_1	-	no_errors	
DKC1	1736	genome.wustl.edu	37	X	153993215	153993215	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153993215	153993215	A	G	SNP	DKC1	NM_001363	human	genbank	57_37b	+1	reviewed	missense	c.58	p.K20E	0.171	NULL	HMMPfam_DKCLD,superfamily_PsdUridine_synth_cat_dom,HMMPfam_TruB_N,superfamily_PUA-like,HMMPfam_PUA,HMMSmart_PUA	-	no_errors	
DOCK7	85440	genome.wustl.edu	37	1	62979452	62979452	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	62979452	62979452	A	C	SNP	DOCK7	NM_033407	human	genbank	57_37b	-1	validated	missense	c.3961	p.S1321A	1.000	NULL	HMMPfam_Ded_cyto	-	no_errors	
DPYSL2	1808	genome.wustl.edu	37	8	26484767	26484767	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	26484767	26484767	G	A	SNP	DPYSL2	NM_001386	human	genbank	57_37b	+1	validated	missense	c.577	p.A193T	1.000	superfamily_Composite domain of metallo-dependent hydrolases,HMMPfam_Amidohydro_1,superfamily_Metallo-dependent hydrolases	superfamily_Composite domain of metallo-dependent hydrolases,HMMPfam_Amidohydro_1,superfamily_Metallo-dependent hydrolases	-	no_errors	
ENSG00000181943	0	genome.wustl.edu	37	11	55258848	55258848	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	55258848	55258848	A	G	SNP	ENSG00000181943	ENST00000314657	human	ensembl	57_37b	+1	known	missense	c.130	p.M44V	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors	
ENSG00000206753	0	genome.wustl.edu	37	1	180727940	180727940	+	RNA	SNP	C	C	T	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	180727940	180727940	C	T	SNP	ENSG00000206753	ENST00000384026	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.263	-	-	-	no_errors	
ENSG00000230291	0	genome.wustl.edu	37	12	80496825	80496825	+	Missense_Mutation	SNP	T	T	C	rs7315692	byCluster;byFrequency;byHapMap	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	80496825	80496825	T	C	SNP	ENSG00000230291	ENST00000427438	human	ensembl	57_37b	-1	known	missense	c.289	p.I97V	1.000	superfamily_Translation proteins SH3-like domain	superfamily_Translation proteins SH3-like domain,HMMSmart_SM00739,HMMPfam_KOW	-		
ENSG00000235531	0	genome.wustl.edu	37	8	72965123	72965123	+	RNA	SNP	C	C	T	rs10504525	byCluster;byFrequency;by1000genomes	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	72965123	72965123	C	T	SNP	ENSG00000235531	ENST00000457356	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.001	-	-	-		
ENSG00000245094	0	genome.wustl.edu	37	2	55844105	55844105	+	RNA	SNP	C	C	T	rs782593	byCluster;byFrequency;bySubmitter;by1000genomes	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	55844105	55844105	C	T	SNP	ENSG00000245094	ENST00000500867	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-		
ENSG00000245172	0	genome.wustl.edu	37	20	61827934	61827934	+	RNA	SNP	G	G	T	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	61827934	61827934	G	T	SNP	ENSG00000245172	ENST00000501034	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	
ENSG00000245172	0	genome.wustl.edu	37	20	61827939	61827939	+	RNA	DEL	G	G	-	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	61827939	61827939	G	-	DEL	ENSG00000245172	ENST00000501034	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.013	-	-	(deletion:rna[61826817,61828088])	no_errors	
EVPL	2125	genome.wustl.edu	37	17	74004924	74004924	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	74004924	74004924	G	A	SNP	EVPL	NM_001988	human	genbank	57_37b	-1	validated	silent	c.4362	p.P1454	0.015	NULL	superfamily_Spectrin repeat,HMMSmart_SM00150,HMMSmart_SM00250,superfamily_Prefoldin,superfamily_Plakin repeat,HMMPfam_Plectin	-	no_errors	
FAM66C	440078	genome.wustl.edu	37	12	8352551	8352551	+	RNA	DEL	T	T	-	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	8352551	8352551	T	-	DEL	FAM66C	NR_026788	human	genbank	57_37b	+1	predicted	rna	NULL	NULL	0.001	-	-	(deletion:rna[8352304,8353596])	no_errors	
FAT3	120114	genome.wustl.edu	37	11	92533961	92533961	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	92533961	92533961	T	C	SNP	FAT3	NM_001008781	human	genbank	57_37b	+1	validated	silent	c.7782	p.N2594	1.000	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	-	no_errors	
GATA3	2625	genome.wustl.edu	37	10	8115853	8115854	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8115853	8115854	-	G	INS	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.1202_1203	p.S402fs	1.000:1.000	NULL	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	-	no_errors	
GDI1	2664	genome.wustl.edu	37	X	153668377	153668377	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153668377	153668377	G	C	SNP	GDI1	NM_001493	human	genbank	57_37b	+1	reviewed	missense	c.478	p.G160R	1.000	superfamily_FAD/NAD(P)-binding domain,HMMPfam_GDI	superfamily_FAD/NAD(P)-binding domain,HMMPfam_GDI	-	no_errors	
GK2	2712	genome.wustl.edu	37	4	80328163	80328163	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	80328163	80328163	C	T	SNP	GK2	NM_033214	human	genbank	57_37b	-1	validated	missense	c.1192	p.E398K	0.999	superfamily_SSF53067,HMMPfam_FGGY_C,PatternScan_FGGY_KINASES_2	superfamily_SSF53067,HMMPfam_FGGY_N,PatternScan_FGGY_KINASES_1,HMMPfam_FGGY_C,PatternScan_FGGY_KINASES_2	-	no_errors	
GLT1D1	144423	genome.wustl.edu	37	12	129373285	129373285	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	129373285	129373285	G	T	SNP	GLT1D1	NM_144669	human	genbank	57_37b	+1	provisional	missense	c.319	p.A107S	1.000	NULL	superfamily_SSF53756,HMMPfam_Glycos_transf_1	-	no_errors	
GPR112	139378	genome.wustl.edu	37	X	135445675	135445675	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	135445675	135445675	G	T	SNP	GPR112	NM_153834	human	genbank	57_37b	+1	validated	missense	c.7317	p.K2439N	0.050	NULL	superfamily_ConA_like_lec_gl,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors	
GRIA1	2890	genome.wustl.edu	37	5	153065885	153065885	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	153065885	153065885	G	A	SNP	GRIA1	NM_000827	human	genbank	57_37b	+1	reviewed	missense	c.1130	p.R377Q	1.000	superfamily_Periplasmic binding protein-like I	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan	-	no_errors	
GRIN2A	2903	genome.wustl.edu	37	16	10031859	10031859	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	10031859	10031859	C	A	SNP	GRIN2A	NM_000833	human	genbank	57_37b	-1	reviewed	missense	c.964	p.G322W	1.000	superfamily_Periplasmic binding protein-like I	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like II,HMMSmart_SM00079,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan,HMMPfam_NMDAR2_C	-	no_errors	
HSPD1	3329	genome.wustl.edu	37	2	198361901	198361901	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	198361901	198361901	C	A	SNP	HSPD1	NM_002156	human	genbank	57_37b	-1	reviewed	missense	c.390	p.K130N	1.000	superfamily_GroEL-ATPase,HMMPfam_Cpn60_TCP1	superfamily_GroEL-ATPase,HMMPfam_Cpn60_TCP1,superfamily_SSF54849,superfamily_SSF52029,PatternScan_CHAPERONINS_CPN60	-	no_errors	
IL17RC	84818	genome.wustl.edu	37	3	9974346	9974346	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	9974346	9974346	C	A	SNP	IL17RC	NM_153461	human	genbank	57_37b	+1	reviewed	missense	c.1655	p.A552E	0.022	NULL	HMMPfam_SEFIR	-	no_errors	
ITGA2B	3674	genome.wustl.edu	37	17	42453065	42453065	+	Missense_Mutation	SNP	A	C	C	rs5911	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	42453065	42453065	A	C	SNP	ITGA2B	NM_000419	human	genbank	57_37b	-1	reviewed	missense	c.2621	p.I874S	0.753	HMMPfam_Integrin_alpha2,superfamily_Integrin domains	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-		
ITIH5	80760	genome.wustl.edu	37	10	7618501	7618501	+	Silent	SNP	A	A	G	rs2275068	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	7618501	7618501	A	G	SNP	ITIH5	NM_030569	human	genbank	57_37b	-1	validated	silent	c.1893	p.D631	0.000	NULL	HMMSmart_SM00609,HMMPfam_VIT,HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_ITI_HC_C	-		
KIAA1543	57662	genome.wustl.edu	37	19	7682695	7682695	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	7682695	7682695	C	T	SNP	KIAA1543	NM_001080429	human	genbank	57_37b	+1	validated	nonsense	c.3583	p.Q1195*	1.000	superfamily_PRC-barrel domain,HMMPfam_DUF1781	superfamily_Calponin-homology domain CH-domain,superfamily_PRC-barrel domain,HMMPfam_DUF1781	-	no_errors	
KLK7	5650	genome.wustl.edu	37	19	51480873	51480873	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51480873	51480873	G	C	SNP	KLK7	NM_005046	human	genbank	57_37b	-1	reviewed	silent	c.681	p.G227	1.000	HMMSmart_SM00020,HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases	HMMSmart_SM00020,HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors	
LAMA5	3911	genome.wustl.edu	37	20	60902626	60902626	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	60902626	60902626	C	T	SNP	LAMA5	NM_005560	human	genbank	57_37b	-1	reviewed	missense	c.4897	p.A1633T	1.000	NULL	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,PatternScan_EGF_2,HMMSmart_SM00281,HMMPfam_Laminin_B,PatternScan_TNFR_NGFR_1,HMMPfam_Laminin_I,HMMPfam_Laminin_II,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors	
LOC727924	727924	genome.wustl.edu	37	15	22332581	22332581	+	RNA	SNP	C	C	A	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	22332581	22332581	C	A	SNP	LOC727924	NR_015416	human	genbank	57_37b	+1	predicted	rna	NULL	NULL	0.318	-	-	-	no_errors	
MIR634	0	genome.wustl.edu	37	17	64783253	64783253	+	RNA	SNP	C	C	T	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	64783253	64783253	C	T	SNP	MIR634	ENST00000385208	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.065	-	-	-	no_errors	
MTMR14	64419	genome.wustl.edu	37	3	9730630	9730630	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	9730630	9730630	C	T	SNP	MTMR14	NM_001077525	human	genbank	57_37b	+1	validated	nonsense	c.1297	p.R433*	0.982	superfamily_(Phosphotyrosine protein) phosphatases II	superfamily_(Phosphotyrosine protein) phosphatases II,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
NCOR1	9611	genome.wustl.edu	37	17	15965036	15965036	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	15965036	15965036	T	A	SNP	NCOR1	NM_006311	human	genbank	57_37b	-1	reviewed	nonsense	c.5560	p.R1854*	0.799	NULL	superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding	-	no_errors	
PCDHA13	56136	genome.wustl.edu	37	5	140262304	140262304	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140262304	140262304	C	T	SNP	PCDHA13	NM_018904	human	genbank	57_37b	+1	reviewed	nonsense	c.451	p.R151*	0.001	superfamily_Cadherin-like,HMMPfam_Cadherin	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PKHD1	5314	genome.wustl.edu	37	6	51524412	51524412	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	51524412	51524412	C	A	SNP	PKHD1	NM_138694	human	genbank	57_37b	-1	reviewed	missense	c.10512	p.Q3504H	1.000	NULL	superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG,HMMSmart_SM00710,HMMPfam_G8,superfamily_Pectin lyase-like	-	no_errors	
PXDNL	137902	genome.wustl.edu	37	8	52287216	52287216	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	52287216	52287216	C	A	SNP	PXDNL	NM_144651	human	genbank	57_37b	-1	validated	silent	c.3633	p.V1211	1.000	superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase	superfamily_L domain-like,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1	-	no_errors	
RFC1	5981	genome.wustl.edu	37	4	39297290	39297290	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	39297290	39297290	C	T	SNP	RFC1	NM_002913	human	genbank	57_37b	-1	reviewed	silent	c.2898	p.S966	0.955	superfamily_Pol_clamp_load_C,HMMPfam_RFC1	superfamily_BRCT,HMMPfam_BRCT,HMMSmart_BRCT,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA,superfamily_Pol_clamp_load_C,HMMPfam_RFC1	-	no_errors	
SAMD9	54809	genome.wustl.edu	37	7	92732742	92732742	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	92732742	92732742	G	T	SNP	SAMD9	NM_017654	human	genbank	57_37b	-1	validated	missense	c.2669	p.T890N	0.007	NULL	superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1	-	no_errors	
SEMA5B	54437	genome.wustl.edu	37	3	122645277	122645277	+	Silent	SNP	C	C	T	rs2276777	byCluster;byFrequency;by1000genomes	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	122645277	122645277	C	T	SNP	SEMA5B	NM_001031702	human	genbank	57_37b	-1	validated	silent	c.1098	p.P366	0.001	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	-		
SLC25A21	89874	genome.wustl.edu	37	14	37180577	37180577	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	37180577	37180577	G	C	SNP	SLC25A21	NM_030631	human	genbank	57_37b	-1	validated	missense	c.549	p.N183K	1.000	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	-	no_errors	
SLC44A5	204962	genome.wustl.edu	37	1	75683550	75683550	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	75683550	75683550	C	T	SNP	SLC44A5	NM_152697	human	genbank	57_37b	-1	validated	splice_site	c.1624+1	e17+1	1.000	-	-	-	no_errors	
STK11IP	114790	genome.wustl.edu	37	2	220473425	220473425	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	220473425	220473425	G	T	SNP	STK11IP	ENST00000456909	human	ensembl	57_37b	+1	known	missense	c.1724	p.R575L	0.115	NULL	superfamily_Outer arm dynein light chain 1,HMMPfam_LRR_1	-	no_errors	
TMCO3	55002	genome.wustl.edu	37	13	114202762	114202762	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	114202762	114202762	C	T	SNP	TMCO3	NM_017905	human	genbank	57_37b	+1	validated	missense	c.1915	p.R639W	0.945	HMMPfam_Na_H_Exchanger	HMMPfam_Na_H_Exchanger	-	no_errors	
TRIM6-TRIM34	445372	genome.wustl.edu	37	11	5626735	5626735	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	5626735	5626735	C	T	SNP	TRIM6-TRIM34	NM_001003819	human	genbank	57_37b	+1	reviewed	silent	c.772	p.L258	0.411	NULL	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMPfam_SPRY,HMMSmart_SPRY	-	no_errors	
TRIOBP	11078	genome.wustl.edu	37	22	38120742	38120742	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	38120742	38120742	C	T	SNP	TRIOBP	NM_001039141	human	genbank	57_37b	+1	reviewed	missense	c.2179	p.R727W	0.000	NULL	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors	
TTLL6	284076	genome.wustl.edu	37	17	46878982	46878982	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	46878982	46878982	C	T	SNP	TTLL6	NM_001130918	human	genbank	57_37b	-1	validated	missense	c.385	p.G129S	1.000	NULL	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors	
WDR17	116966	genome.wustl.edu	37	4	177077232	177077232	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	177077232	177077232	G	T	SNP	WDR17	NM_170710	human	genbank	57_37b	+1	reviewed	missense	c.2535	p.W845C	1.000	NULL	HMMSmart_WD40,HMMPfam_WD40,superfamily_Amine_DH_B_like,superfamily_WD40_like,PatternScan_WD_REPEATS_1	-	no_errors	
YTHDF1	54915	genome.wustl.edu	37	20	61833786	61833786	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	61833786	61833786	G	A	SNP	YTHDF1	NM_017798	human	genbank	57_37b	-1	validated	silent	c.1506	p.V502	1.000	HMMPfam_YTH	HMMPfam_YTH	-	no_errors	
YTHDF1	54915	genome.wustl.edu	37	20	61834026	61834026	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	61834026	61834026	G	A	SNP	YTHDF1	NM_017798	human	genbank	57_37b	-1	validated	silent	c.1266	p.D422	0.998	NULL	HMMPfam_YTH	-	no_errors	
ZNF160	90338	genome.wustl.edu	37	19	53572793	53572793	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	53572793	53572793	G	A	SNP	ZNF160	NM_001102603	human	genbank	57_37b	-1	reviewed	missense	c.994	p.R332W	0.033	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF434	54925	genome.wustl.edu	37	16	3432988	3432988	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	3432988	3432988	T	C	SNP	ZNF434	NM_017810	human	genbank	57_37b	-1	provisional	missense	c.1322	p.K441R	0.946	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF521	25925	genome.wustl.edu	37	18	22805247	22805247	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	22805247	22805247	C	T	SNP	ZNF521	NM_015461	human	genbank	57_37b	-1	validated	missense	c.2635	p.V879I	0.997	superfamily_C2H2 and C2HC zinc fingers	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF648	127665	genome.wustl.edu	37	1	182025629	182025629	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TW-01	TCGA-AR-A0TW-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	182025629	182025629	C	A	SNP	ZNF648	NM_001009992	human	genbank	57_37b	-1	provisional	missense	c.1517	p.C506F	0.899	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
