Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AFF4	27125	genome.wustl.edu	37	5	132269985	132269985	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	132269985	132269985	G	A	SNP	AFF4	NM_014423	human	genbank	57_37b	-1	validated	missense	c.772	p.R258W	1.000	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors	
ATP1B4	23439	genome.wustl.edu	37	X	119510247	119510247	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	119510247	119510247	C	T	SNP	ATP1B4	NM_001142447	human	genbank	57_37b	+1	validated	missense	c.772	p.R258C	1.000	HMMPfam_Na_K-ATPase	PatternScan_ATPASE_NA_K_BETA_1,HMMPfam_Na_K-ATPase,PatternScan_ATPASE_NA_K_BETA_2	-	no_errors	
B4GALT4	8702	genome.wustl.edu	37	3	118937505	118937505	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	118937505	118937505	G	C	SNP	B4GALT4	NM_003778	human	genbank	57_37b	-1	reviewed	silent	c.789	p.L263	0.999	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Galactosyl_T_2	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Galactosyl_T_2	-	no_errors	
CEP70	80321	genome.wustl.edu	37	3	138218960	138218960	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	138218960	138218960	G	C	SNP	CEP70	NM_024491	human	genbank	57_37b	-1	validated	missense	c.1644	p.D548E	0.974	NULL	NULL	-	no_errors	
CIT	11113	genome.wustl.edu	37	12	120156653	120156653	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	120156653	120156653	C	T	SNP	CIT	NM_007174	human	genbank	57_37b	-1	validated	missense	c.3728	p.R1243Q	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C,PatternScan_CPSASE_2,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00036,HMMPfam_CNH	-	no_errors	
CLINT1	9685	genome.wustl.edu	37	5	157244502	157244502	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	157244502	157244502	G	A	SNP	CLINT1	NM_014666	human	genbank	57_37b	-1	validated	missense	c.95	p.T32M	1.000	superfamily_ENTH/VHS domain,HMMPfam_ENTH,HMMSmart_SM00273	superfamily_ENTH/VHS domain,HMMPfam_ENTH,HMMSmart_SM00273	-	no_errors	
CSRNP3	80034	genome.wustl.edu	37	2	166536142	166536142	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	166536142	166536142	C	T	SNP	CSRNP3	NM_024969	human	genbank	57_37b	+1	validated	missense	c.1637	p.A546V	0.040	NULL	NULL	-	no_errors	
CST2	1470	genome.wustl.edu	37	20	23807084	23807084	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	23807084	23807084	G	A	SNP	CST2	NM_001322	human	genbank	57_37b	-1	reviewed	nonsense	c.214	p.R72*	0.007	HMMSmart_CY,HMMPfam_Cystatin,superfamily_SSF54403	HMMSmart_CY,HMMPfam_Cystatin,superfamily_SSF54403,PatternScan_CYSTATIN	-	no_errors	
CTR9	9646	genome.wustl.edu	37	11	10777333	10777333	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	10777333	10777333	G	A	SNP	CTR9	NM_014633	human	genbank	57_37b	+1	provisional	missense	c.493	p.A165T	1.000	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR	-	no_errors	
DCDC5	196296	genome.wustl.edu	37	11	30928204	30928204	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	30928204	30928204	C	T	SNP	DCDC5	XM_002343054	human	genbank	57_37b	-1	model	missense	c.1710	p.M570I	0.015	NULL	superfamily_Doublecortin (DC),HMMSmart_SM00537,HMMPfam_DCX	-	no_errors	
DHX37	57647	genome.wustl.edu	37	12	125465270	125465272	+	In_Frame_Del	DEL	CTC	CTC	-	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	125465270	125465272	CTC	-	DEL	DHX37	NM_032656	human	genbank	57_37b	-1	reviewed	in_frame_del	c.504_502	p.E168in_frame_del	0.904:0.904:0.905	NULL	PatternScan_DEAH_ATP_HELICASE,HMMSmart_DEXDc,superfamily_SSF52540,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605	(deletion:cds_exon[125465036,125465384])	no_errors	
DSPP	1834	genome.wustl.edu	37	4	88537101	88537101	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	88537101	88537101	G	A	SNP	DSPP	NM_014208	human	genbank	57_37b	+1	reviewed	missense	c.3287	p.S1096N	0.255	NULL	NULL	-	no_errors	
DSPP	1834	genome.wustl.edu	37	4	88537227	88537227	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	88537227	88537227	G	A	SNP	DSPP	NM_014208	human	genbank	57_37b	+1	reviewed	missense	c.3413	p.S1138N	0.938	NULL	NULL	-	no_errors	
DYNC1I2	1781	genome.wustl.edu	37	2	172563065	172563065	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	172563065	172563065	G	A	SNP	DYNC1I2	NM_001378	human	genbank	57_37b	+1	provisional	missense	c.235	p.E79K	1.000	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors	
EHD1	10938	genome.wustl.edu	37	11	64622955	64622955	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64622955	64622955	G	A	SNP	EHD1	NM_006795	human	genbank	57_37b	-1	reviewed	missense	c.919	p.H307Y	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N,superfamily_EF-hand,HMMSmart_SM00027,PatternScan_EF_HAND_1	-	no_errors	
EMB	133418	genome.wustl.edu	37	5	49695120	49695120	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	49695120	49695120	G	C	SNP	EMB	NM_198449	human	genbank	57_37b	-1	reviewed	missense	c.971	p.S324C	0.009	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409	-	no_errors	
ENSG00000244826	0	genome.wustl.edu	37	5	176045010	176045010	+	RNA	SNP	G	G	A	rs60890501	byCluster;byFrequency;by1000genomes	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	176045010	176045010	G	A	SNP	ENSG00000244826	ENST00000501116	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.005	-	-	-		
ENSG00000245227	0	genome.wustl.edu	37	12	48739438	48739438	+	RNA	SNP	T	T	C	rs3751273	byCluster;byFrequency;by1000genomes	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	48739438	48739438	T	C	SNP	ENSG00000245227	ENST00000499513	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-		
ENSG00000245914	0	genome.wustl.edu	37	3	13415539	13415539	+	RNA	SNP	G	G	T	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	13415539	13415539	G	T	SNP	ENSG00000245914	ENST00000500340	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	
ENSG00000247210	0	genome.wustl.edu	37	5	10710716	10710716	+	RNA	SNP	A	A	G	rs267988	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	10710716	10710716	A	G	SNP	ENSG00000247210	ENST00000499915	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-		
FCF1	51077	genome.wustl.edu	37	14	75200780	75200780	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	75200780	75200780	A	G	SNP	FCF1	NM_015962	human	genbank	57_37b	+1	validated	missense	c.455	p.H152R	1.000	superfamily_PIN domain-like,HMMSmart_SM00670,HMMPfam_Fcf1	superfamily_PIN domain-like,HMMSmart_SM00670,HMMPfam_Fcf1	-	no_errors	
HCFC1	3054	genome.wustl.edu	37	X	153236135	153236135	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153236135	153236135	C	T	SNP	HCFC1	NM_005334	human	genbank	57_37b	-1	reviewed	missense	c.157	p.E53K	1.000	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMPfam_Kelch_2,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
HGF	3082	genome.wustl.edu	37	7	81386610	81386610	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	81386610	81386610	C	G	SNP	HGF	NM_000601	human	genbank	57_37b	-1	reviewed	missense	c.377	p.R126T	1.000	superfamily_Hairpin loop containing domain-like,superfamily_Kringle-like,HMMSmart_SM00130	HMMPfam_PAN_1,superfamily_Hairpin loop containing domain-like,HMMSmart_SM00473,superfamily_Kringle-like,HMMSmart_SM00130,HMMPfam_Kringle,PatternScan_KRINGLE_1,HMMSmart_SM00020,HMMPfam_Trypsin,superfamily_Trypsin-like serine proteases	-	no_errors	
HIPK2	28996	genome.wustl.edu	37	7	139311489	139311489	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	139311489	139311489	C	T	SNP	HIPK2	ENST00000263551	human	ensembl	57_37b	-1	known	missense	c.1477	p.E493K	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
HIST1H2AG	8969	genome.wustl.edu	37	6	27100982	27100982	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	27100982	27100982	C	T	SNP	HIST1H2AG	NM_021064	human	genbank	57_37b	+1	reviewed	silent	c.132	p.V44	0.253	superfamily_Histone-fold,HMMSmart_SM00414,HMMPfam_Histone	superfamily_Histone-fold,HMMSmart_SM00414,HMMPfam_Histone,PatternScan_HISTONE_H2A	-	no_errors	
KIAA2026	158358	genome.wustl.edu	37	9	5988373	5988373	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	5988373	5988373	C	G	SNP	KIAA2026	NM_001017969	human	genbank	57_37b	-1	validated	missense	c.766	p.E256Q	1.000	NULL	superfamily_Bromodomain	-	no_errors	
LGALS12	85329	genome.wustl.edu	37	11	63277343	63277343	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	63277343	63277343	G	C	SNP	LGALS12	NM_001142535	human	genbank	57_37b	+1	validated	missense	c.535	p.E179Q	0.001	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00276,HMMPfam_Gal-bind_lectin	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00276,HMMPfam_Gal-bind_lectin	-	no_errors	
LIAS	11019	genome.wustl.edu	37	4	39474832	39474832	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	39474832	39474832	G	T	SNP	LIAS	NM_006859	human	genbank	57_37b	+1	reviewed	splice_site	c.1066+1	e10+1	1.000	-	-	-	no_errors	
LOC100131060	0	genome.wustl.edu	37	1	59365079	59365079	+	RNA	SNP	G	G	T	rs2492323	byCluster;byFrequency;by1000genomes	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	59365079	59365079	G	T	SNP	LOC100131060	XR_078225	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.807	-	-	-		
LPO	4025	genome.wustl.edu	37	17	56329723	56329723	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	56329723	56329723	C	T	SNP	LPO	NM_006151	human	genbank	57_37b	+1	reviewed	missense	c.961	p.R321C	0.871	superfamily_Peroxidase_super,HMMPfam_An_peroxidase	PatternScan_PEROXIDASE_1,PatternScan_PEROXIDASE_2,superfamily_Peroxidase_super,HMMPfam_An_peroxidase	-	no_errors	
MAGEA8	4107	genome.wustl.edu	37	X	149013838	149013838	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	149013838	149013838	G	A	SNP	MAGEA8	NM_005364	human	genbank	57_37b	+1	reviewed	silent	c.792	p.A264	0.096	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors	
MCF2L	23263	genome.wustl.edu	37	13	113744459	113744459	+	Missense_Mutation	SNP	C	C	T	rs75112596	byCluster;by1000genomes	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	113744459	113744459	C	T	SNP	MCF2L	ENST00000423482	human	ensembl	57_37b	+1	known	missense	c.436	p.L146F	1.000	NULL	superfamily_PH domain-like	-		
MED23	9439	genome.wustl.edu	37	6	131937087	131937087	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	131937087	131937087	G	C	SNP	MED23	NM_004830	human	genbank	57_37b	-1	reviewed	missense	c.836	p.S279C	1.000	NULL	NULL	-	no_errors	
MLL3	58508	genome.wustl.edu	37	7	151845516	151845516	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	151845516	151845516	T	C	SNP	MLL3	NM_170606	human	genbank	57_37b	-1	reviewed	missense	c.13496	p.K4499R	1.000	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMSmart_SM00184	PatternScan_HMGI_Y,HMMPfam_AT_hook,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,HMMSmart_SM00184,PatternScan_ZF_PHD_1,PatternScan_ATPASE_ALPHA_BETA,HMMSmart_SM00398,HMMPfam_HMG_box,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-	no_errors	
MST1P9	0	genome.wustl.edu	37	1	17084066	17084066	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	17084066	17084066	G	A	SNP	MST1P9	ENST00000455405	human	ensembl	57_37b	-1	known	missense	c.1933	p.R645W	1.000	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	HMMPfam_PAN_1,superfamily_Hairpin loop containing domain-like,HMMSmart_SM00473,HMMSmart_SM00130,HMMPfam_Kringle,superfamily_Kringle-like,PatternScan_KRINGLE_1,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	-	no_errors	
MTDH	92140	genome.wustl.edu	37	8	98656966	98656966	+	Missense_Mutation	SNP	G	G	T	rs17854373	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	98656966	98656966	G	T	SNP	MTDH	NM_178812	human	genbank	57_37b	+1	validated	missense	c.232	p.A78S	1.000	NULL	NULL	-		
MTRF1L	54516	genome.wustl.edu	37	6	153323806	153323806	+	Silent	SNP	A	G	G	rs3818126	byCluster;by1000genomes	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	153323806	153323806	A	G	SNP	MTRF1L	NM_019041	human	genbank	57_37b	-1	validated	silent	c.15	p.V5	0.000	NULL	superfamily_Release factor (Pfam 00472),HMMPfam_PCRF,HMMPfam_RF-1,PatternScan_RF_PROK_I	-		
NOX5	79400	genome.wustl.edu	37	15	69328195	69328195	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	69328195	69328195	G	A	SNP	NOX5	NM_024505	human	genbank	57_37b	+1	provisional	silent	c.1053	p.P351	0.829	HMMPfam_Ferric_reduct	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_Ferric_reduct,superfamily_Riboflavin_synthase_like_b-brl,HMMPfam_FAD_binding_8,superfamily_SSF52343,HMMPfam_NAD_binding_6	-	no_errors	
NPY1R	4886	genome.wustl.edu	37	4	164247281	164247281	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	164247281	164247281	T	C	SNP	NPY1R	NM_000909	human	genbank	57_37b	-1	validated	missense	c.426	p.I142M	0.493	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OC90	729330	genome.wustl.edu	37	8	133045292	133045292	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	133045292	133045292	C	A	SNP	OC90	NM_001080399	human	genbank	57_37b	-1	validated	nonsense	c.853	p.E285*	0.000	NULL	HMMSmart_SM00085,superfamily_Phospholipase A2 PLA2,HMMPfam_Phospholip_A2_1,PatternScan_PA2_HIS,PatternScan_PA2_ASP	-	no_errors	
OPLAH	26873	genome.wustl.edu	37	8	145113241	145113241	+	Missense_Mutation	SNP	T	T	G	rs3935209	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	145113241	145113241	T	G	SNP	OPLAH	ENST00000426825	human	ensembl	57_37b	-1	known	missense	c.850	p.S284R	0.961	HMMPfam_Hydantoinase_A	HMMPfam_Hydant_A_N,HMMPfam_Hydantoinase_A,HMMPfam_Hydantoinase_B	-		
PABPC1L	80336	genome.wustl.edu	37	20	43565559	43565559	+	Missense_Mutation	SNP	G	G	C	rs3746583	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	43565559	43565559	G	C	SNP	PABPC1L	ENST00000372821	human	ensembl	57_37b	+1	known	missense	c.332	p.R111P	0.000	superfamily_PABC (PABP) domain	superfamily_PABC (PABP) domain,HMMPfam_PABP	-		
PCSK2	5126	genome.wustl.edu	37	20	17208116	17208116	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	17208116	17208116	G	T	SNP	PCSK2	NM_002594	human	genbank	57_37b	+1	reviewed	nonsense	c.166	p.G56*	1.000	superfamily_Protease propeptides/inhibitors	superfamily_Protease propeptides/inhibitors,superfamily_Subtilisin-like,HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_ASP,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER,superfamily_Galactose-binding domain-like,HMMPfam_P_proprotein	-	no_errors	
PGR	5241	genome.wustl.edu	37	11	100999245	100999245	+	Missense_Mutation	SNP	G	A	A	rs11571145	byCluster	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	100999245	100999245	G	A	SNP	PGR	NM_000926	human	genbank	57_37b	-1	reviewed	missense	c.557	p.P186L	0.823	HMMPfam_Prog_receptor	HMMPfam_Prog_receptor,HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-		
PIGW	284098	genome.wustl.edu	37	17	34893216	34893216	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	34893216	34893216	T	G	SNP	PIGW	NM_178517	human	genbank	57_37b	+1	validated	missense	c.266	p.F89C	0.573	NULL	HMMPfam_GWT1	-	no_errors	
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PRR14	78994	genome.wustl.edu	37	16	30667601	30667601	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	30667601	30667601	C	T	SNP	PRR14	NM_024031	human	genbank	57_37b	+1	provisional	missense	c.1727	p.T576I	0.214	NULL	NULL	-	no_errors	
RELN	5649	genome.wustl.edu	37	7	103162496	103162496	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	103162496	103162496	C	T	SNP	RELN	NM_005045	human	genbank	57_37b	-1	reviewed	silent	c.7641	p.A2547	0.999	NULL	HMMPfam_Reeler,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Sialidase	-	no_errors	
SCFD2	152579	genome.wustl.edu	37	4	54218895	54218895	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	54218895	54218895	T	A	SNP	SCFD2	NM_152540	human	genbank	57_37b	-1	validated	missense	c.877	p.I293F	1.000	NULL	superfamily_Sec1/munc18-like (SM) proteins,HMMPfam_Sec1	-	no_errors	
SFRS11	9295	genome.wustl.edu	37	1	70700442	70700442	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	70700442	70700442	G	C	SNP	SFRS11	NM_004768	human	genbank	57_37b	+1	reviewed	missense	c.511	p.G171R	1.000	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors	
SIPA1L1	26037	genome.wustl.edu	37	14	72125116	72125116	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	72125116	72125116	C	G	SNP	SIPA1L1	NM_015556	human	genbank	57_37b	+1	provisional	missense	c.2060	p.S687C	1.000	superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP	superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors	
SLC1A7	6512	genome.wustl.edu	37	1	53608037	53608037	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	53608037	53608037	C	T	SNP	SLC1A7	NM_006671	human	genbank	57_37b	-1	validated	missense	c.85	p.V29M	1.000	HMMPfam_SDF	HMMPfam_SDF,PatternScan_NA_DICARBOXYL_SYMP_1,PatternScan_NA_DICARBOXYL_SYMP_2	-	no_errors	
SNURF	8926	genome.wustl.edu	37	15	25200202	25200202	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	25200202	25200202	C	T	SNP	SNURF	NM_005678	human	genbank	57_37b	+1	reviewed	missense	c.7	p.R3W	1.000	HMMPfam_SNURF	HMMPfam_SNURF	-	no_errors	
STC1	6781	genome.wustl.edu	37	8	23709754	23709754	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	23709754	23709754	C	T	SNP	STC1	NM_003155	human	genbank	57_37b	-1	reviewed	splice_site	c.261+1	e2+1	1.000	-	-	-	no_errors	
STON2	85439	genome.wustl.edu	37	14	81744003	81744003	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	81744003	81744003	T	A	SNP	STON2	NM_033104	human	genbank	57_37b	-1	provisional	missense	c.1652	p.D551V	0.749	NULL	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor	-	no_errors	
STRA6	64220	genome.wustl.edu	37	15	74489717	74489717	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	74489717	74489717	G	C	SNP	STRA6	NM_001142617	human	genbank	57_37b	-1	reviewed	silent	c.228	p.L76	0.801	NULL	NULL	-	no_errors	
TFAP2B	7021	genome.wustl.edu	37	6	50803801	50803801	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	50803801	50803801	C	T	SNP	TFAP2B	NM_003221	human	genbank	57_37b	+1	reviewed	missense	c.629	p.S210F	1.000	NULL	HMMPfam_TF_AP-2	-	no_errors	
TMEM79	84283	genome.wustl.edu	37	1	156261491	156261491	+	RNA	SNP	G	G	C	rs3795728	byCluster;byFrequency;by1000genomes	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156261491	156261491	G	C	SNP	TMEM79	NR_026678	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.000	-	-	-		
TMEM8B	51754	genome.wustl.edu	37	9	35846559	35846559	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	35846559	35846559	G	C	SNP	TMEM8B	NM_001042589	human	genbank	57_37b	+1	provisional	missense	c.591	p.K197N	1.000	NULL	PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors	
TRAPPC9	83696	genome.wustl.edu	37	8	141262906	141262906	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	141262906	141262906	G	A	SNP	TRAPPC9	NM_031466	human	genbank	57_37b	-1	reviewed	nonsense	c.2695	p.Q899*	1.000	HMMPfam_Trs120	HMMPfam_Trs120	-	no_errors	
UNC80	285175	genome.wustl.edu	37	2	210858856	210858856	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	210858856	210858856	G	A	SNP	UNC80	NM_032504	human	genbank	57_37b	+1	validated	silent	c.9378	p.A3126	0.000	NULL	NULL	-	no_errors	
ZEB1	6935	genome.wustl.edu	37	10	31815672	31815672	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	31815672	31815672	G	A	SNP	ZEB1	NM_030751	human	genbank	57_37b	+1	validated	missense	c.2855	p.R952Q	1.000	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	PatternScan_HOMEOBOX_1,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_HOX	-	no_errors	
ZNF167	55888	genome.wustl.edu	37	3	44612650	44612650	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	44612650	44612650	G	T	SNP	ZNF167	NM_018651	human	genbank	57_37b	+1	validated	missense	c.2048	p.R683I	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	HMMPfam_SCAN,HMMSmart_SM00431,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF268	10795	genome.wustl.edu	37	12	133780972	133780974	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	133780972	133780974	CTT	-	DEL	ZNF268	NM_003415	human	genbank	57_37b	+1	validated	in_frame_del	c.2700_2702	p.F901in_frame_del	0.001:0.175:0.158	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	(deletion:cds_exon[133778730,133781116])	no_errors	
ZNF658	26149	genome.wustl.edu	37	9	40773494	40773494	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	40773494	40773494	C	A	SNP	ZNF658	NM_033160	human	genbank	57_37b	-1	validated	missense	c.1781	p.R594I	0.975	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF804B	219578	genome.wustl.edu	37	7	88965621	88965621	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	88965621	88965621	C	T	SNP	ZNF804B	NM_181646	human	genbank	57_37b	+1	provisional	missense	c.3325	p.H1109Y	0.026	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZP4	57829	genome.wustl.edu	37	1	238049138	238049138	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TZ-01	TCGA-AR-A0TZ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	238049138	238049138	G	A	SNP	ZP4	NM_021186	human	genbank	57_37b	-1	reviewed	silent	c.888	p.I296	0.000	HMMPfam_Zona_pellucida,HMMSmart_SM00241	superfamily_Trefoil,HMMSmart_SM00018,HMMPfam_Trefoil,PatternScan_P_TREFOIL,HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1	-	no_errors	
