Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
A2BP1	54715	genome.wustl.edu	37	16	7383011	7383011	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	7383011	7383011	G	A	SNP	A2BP1	NM_145891	human	genbank	57_37b	+1	reviewed	silent	c.9	p.A3	1.000	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors	
ADAP1	11033	genome.wustl.edu	37	7	939122	939122	+	Missense_Mutation	SNP	C	C	T	rs117710032	by1000genomes	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	939122	939122	C	T	SNP	ADAP1	ENST00000446141	human	ensembl	57_37b	-1	known	missense	c.749	p.R250Q	0.008	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	HMMPfam_ArfGap,superfamily_Pyk2-associated protein beta ARF-GAP domain,superfamily_PH domain-like,HMMSmart_SM00233,HMMPfam_PH	-		
ARHGEF15	22899	genome.wustl.edu	37	17	8215645	8215645	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	8215645	8215645	C	G	SNP	ARHGEF15	NM_173728	human	genbank	57_37b	+1	reviewed	missense	c.288	p.S96R	0.967	NULL	PatternScan_DH_1,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729	-	no_errors	
BAIAP3	8938	genome.wustl.edu	37	16	1394995	1394995	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	1394995	1394995	C	T	SNP	BAIAP3	NM_003933	human	genbank	57_37b	+1	reviewed	missense	c.1940	p.T647M	0.707	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD	-	no_errors	
C10orf71	118461	genome.wustl.edu	37	10	50533921	50533921	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	50533921	50533921	G	A	SNP	C10orf71	NM_001135196	human	genbank	57_37b	+1	validated	missense	c.3331	p.E1111K	0.987	NULL	PatternScan_SUGAR_TRANSPORT_1	-	no_errors	
DCAF8L1	139425	genome.wustl.edu	37	X	27999024	27999024	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	27999024	27999024	A	T	SNP	DCAF8L1	NM_001017930	human	genbank	57_37b	-1	provisional	missense	c.428	p.I143N	0.760	superfamily_WD40_like	PatternScan_WD_REPEATS_1,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	-	no_errors	
DNAH5	1767	genome.wustl.edu	37	5	13735415	13735415	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	13735415	13735415	C	T	SNP	DNAH5	NM_001369	human	genbank	57_37b	-1	reviewed	silent	c.11586	p.P3862	0.317	NULL	HMMPfam_DHC_N1,superfamily_Spectrin,HMMPfam_DHC_N2,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors	
EFCAB3	146779	genome.wustl.edu	37	17	60464771	60464771	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	60464771	60464771	A	G	SNP	EFCAB3	NM_001144933	human	genbank	57_37b	+1	validated	missense	c.301	p.M101V	0.912	superfamily_EF-hand	superfamily_EF-hand,PatternScan_EF_HAND_1	-	no_errors	
ENSG00000206750	0	genome.wustl.edu	37	GL000205.1	81486	81486	+	RNA	SNP	A	A	C	novel	unknown	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	GL000205.1	81486	81486	A	C	SNP	ENSG00000206750	ENST00000384023	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors	
ENSG00000245555	0	genome.wustl.edu	37	8	28203937	28203937	+	RNA	SNP	G	G	T	rs351780	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	28203937	28203937	G	T	SNP	ENSG00000245555	ENST00000499192	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-		
ENSG00000246284	0	genome.wustl.edu	37	6	150047899	150047899	+	RNA	SNP	C	C	G	rs55858240	byCluster;byFrequency;by1000genomes	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	150047899	150047899	C	G	SNP	ENSG00000246284	ENST00000499404	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-		
FLG	2312	genome.wustl.edu	37	1	152282321	152282321	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152282321	152282321	G	A	SNP	FLG	NM_002016	human	genbank	57_37b	-1	reviewed	missense	c.5041	p.H1681Y	0.007	HMMPfam_Filaggrin	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_Filaggrin	-	no_errors	
HERC2	8924	genome.wustl.edu	37	15	28493757	28493757	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	28493757	28493757	C	T	SNP	HERC2	NM_004667	human	genbank	57_37b	-1	reviewed	missense	c.3176	p.R1059H	1.000	NULL	superfamily_RCC1/BLIP-II,HMMPfam_RCC1,HMMSmart_SM00706,superfamily_Cytochrome b5-like heme/steroid binding domain,HMMPfam_Cyt-b5,HMMPfam_MIB_HERC2,HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,superfamily_Galactose-binding domain-like,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RCC1_2,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors	
HSP90AB1	3326	genome.wustl.edu	37	6	44219919	44219921	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	44219919	44219921	AGA	-	DEL	HSP90AB1	NM_007355	human	genbank	57_37b	+1	provisional	in_frame_del	c.1646_1648	p.K552in_frame_del	1.000:1.000:1.000	HMMPfam_HSP90	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,PatternScan_HSP90,HMMPfam_HATPase_c,HMMSmart_SM00387,HMMPfam_HSP90,superfamily_Ribosomal protein S5 domain 2-like,superfamily_HSP90 C-terminal domain (C-terminal part of Pfam 00183)	(deletion:cds_exon[44219736,44220004])	no_errors	
IGHV3-6	0	genome.wustl.edu	37	14	106320472	106320472	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	106320472	106320472	G	A	SNP	IGHV3-6	ENST00000426581	human	ensembl	57_37b	-1	known	silent	c.1776	p.S592	0.842	superfamily_Immunoglobulin	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC	-	no_errors	
KCNQ2	3785	genome.wustl.edu	37	20	62065186	62065186	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	62065186	62065186	C	T	SNP	KCNQ2	NM_172107	human	genbank	57_37b	-1	reviewed	missense	c.1094	p.R365Q	1.000	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_KCNQ_channel	-	no_errors	
LOC100131573	0	genome.wustl.edu	37	5	93928495	93928495	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	93928495	93928495	T	G	SNP	LOC100131573	XM_001716404	human	genbank	57_37b	+1	model	missense	c.143	p.L48R	0.228	NULL	NULL	-	no_errors	
LOC100289633	0	genome.wustl.edu	37	11	32450119	32450119	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	32450119	32450119	C	T	SNP	LOC100289633	XM_002343055	human	genbank	57_37b	+1	model	missense	c.13	p.R5C	0.998	NULL	NULL	-	no_errors	
LOC727838	727838	genome.wustl.edu	37	X	118207956	118207956	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	118207956	118207956	C	T	SNP	LOC727838	XM_002343842	human	genbank	57_37b	+1	model	silent	c.678	p.A226	0.004	NULL	NULL	-	no_errors	
MIB1	57534	genome.wustl.edu	37	18	19371349	19371349	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	19371349	19371349	C	T	SNP	MIB1	NM_020774	human	genbank	57_37b	+1	validated	missense	c.923	p.P308L	1.000	NULL	PatternScan_ZF_RING_1,HMMPfam_MIB_HERC2,HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4	-	no_errors	
MIR934	0	genome.wustl.edu	37	X	135633088	135633088	+	RNA	SNP	A	A	T	novel	unknown	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	135633088	135633088	A	T	SNP	MIR934	ENST00000401241	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	
MMEL1	79258	genome.wustl.edu	37	1	2535380	2535380	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	2535380	2535380	G	A	SNP	MMEL1	NM_033467	human	genbank	57_37b	-1	reviewed	silent	c.957	p.V319	1.000	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M13_N"	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13"	-	no_errors	
P4HTM	54681	genome.wustl.edu	37	3	49038967	49038967	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49038967	49038967	A	C	SNP	P4HTM	NM_177938	human	genbank	57_37b	+1	reviewed	missense	c.533	p.E178A	1.000	superfamily_SSF47473,HMMSmart_P4Hc	superfamily_SSF47473,HMMSmart_P4Hc,PatternScan_EF_HAND_1,HMMPfam_2OG-FeII_Oxy	-	no_errors	
PTEN	5728	genome.wustl.edu	37	10	89624254	89624254	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	89624254	89624254	A	C	SNP	PTEN	ENST00000371953	human	ensembl	57_37b	+1	known	missense	c.28	p.S10R	1.000	NULL	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_DSPc,HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors	
PWP2	5822	genome.wustl.edu	37	21	45545915	45545915	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	45545915	45545915	G	A	SNP	PWP2	NM_005049	human	genbank	57_37b	+1	validated	missense	c.1989	p.M663I	1.000	superfamily_WD40_like	superfamily_Peptidase_S9A_N,HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMPfam_PWP2	-	no_errors	
SARM1	23098	genome.wustl.edu	37	17	26712099	26712099	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	26712099	26712099	T	-	DEL	SARM1	ENST00000379061	human	ensembl	57_37b	+1	known	frame_shift_del	c.1429	p.Y477fs	1.000	superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2	superfamily_ARM repeat,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255	(deletion:cds_exon[26712059,26712294])	no_errors	
SARM1	23098	genome.wustl.edu	37	17	26712101	26712101	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	26712101	26712101	T	-	DEL	SARM1	ENST00000379061	human	ensembl	57_37b	+1	known	frame_shift_del	c.1431	p.S478fs	0.991	HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2	HMMSmart_SM00255,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2,superfamily_ARM repeat	(deletion:cds_exon[26712059,26712294])	no_errors	
SDCCAG3	10807	genome.wustl.edu	37	9	139301619	139301619	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	139301619	139301619	G	C	SNP	SDCCAG3	NM_001039707	human	genbank	57_37b	-1	validated	missense	c.797	p.T266R	1.000	NULL	NULL	-	no_errors	
SDK1	221935	genome.wustl.edu	37	7	4091315	4091315	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	4091315	4091315	A	G	SNP	SDK1	NM_152744	human	genbank	57_37b	+1	validated	missense	c.2764	p.T922A	0.999	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
TCF7	6932	genome.wustl.edu	37	5	133478723	133478723	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	133478723	133478723	G	A	SNP	TCF7	NM_003202	human	genbank	57_37b	+1	validated	missense	c.958	p.E320K	1.000	superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	HMMPfam_CTNNB1_binding,superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	C	T	rs28934576	unknown	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7577120	7577120	C	T	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.818	p.R273H	0.864	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-		
WWC2	80014	genome.wustl.edu	37	4	184182178	184182178	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	184182178	184182178	G	A	SNP	WWC2	NM_024949	human	genbank	57_37b	+1	validated	missense	c.1402	p.E468K	1.000	NULL	superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2	-	no_errors	
ZNF724P	440519	genome.wustl.edu	37	19	23406559	23406559	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A1AJ-01	TCGA-AR-A1AJ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	23406559	23406559	T	C	SNP	ZNF724P	ENST00000418100	human	ensembl	57_37b	-1	known	missense	c.488	p.H163R	0.291	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
