Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AASDHPPT	60496	genome.wustl.edu	37	11	105948464	105948464	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	105948464	105948464	C	G	SNP	AASDHPPT	NM_015423	human	genbank	57_37b	+1	reviewed	missense	c.27	p.C9W	0.047	NULL	superfamily_4-PPT_transf,HMMPfam_ACPS	-	no_errors	
ABCC8	6833	genome.wustl.edu	37	11	17498260	17498260	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	17498260	17498260	G	A	SNP	ABCC8	NM_000352	human	genbank	57_37b	-1	reviewed	missense	c.64	p.L22F	1.000	NULL	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
APOBEC2	10930	genome.wustl.edu	37	6	41029366	41029367	+	Frame_Shift_Ins	INS	-	-	CC	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	41029366	41029367	-	CC	INS	APOBEC2	NM_006789	human	genbank	57_37b	+1	validated	frame_shift_ins	c.431_432	p.L145fs	1.000:1.000	HMMPfam_APOBEC_N,superfamily_Cytidine deaminase-like	HMMPfam_APOBEC_N,superfamily_Cytidine deaminase-like,HMMPfam_APOBEC_C	-	no_errors	
ATG2B	55102	genome.wustl.edu	37	14	96779679	96779679	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	96779679	96779679	C	A	SNP	ATG2B	NM_018036	human	genbank	57_37b	-1	validated	missense	c.3736	p.A1246S	1.000	NULL	HMMPfam_ATG_C	-	no_errors	
ATN1	1822	genome.wustl.edu	37	12	7048007	7048007	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	7048007	7048007	C	T	SNP	ATN1	NM_001007026	human	genbank	57_37b	+1	reviewed	missense	c.2881	p.H961Y	0.614	HMMPfam_Atrophin-1	HMMPfam_Atrophin-1	-	no_errors	
BACH1	571	genome.wustl.edu	37	21	30699407	30699407	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	30699407	30699407	C	T	SNP	BACH1	NM_001186	human	genbank	57_37b	+1	reviewed	missense	c.1262	p.A421V	0.951	NULL	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMSmart_SM00338,PatternScan_BZIP_BASIC,HMMPfam_bZIP_1	-	no_errors	
C1orf167	284498	genome.wustl.edu	37	1	11828364	11828364	+	Missense_Mutation	SNP	G	G	A	rs77347935	byCluster;byFrequency;by1000genomes	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	11828364	11828364	G	A	SNP	C1orf167	ENST00000433342	human	ensembl	57_37b	+1	known	missense	c.1757	p.R586H	0.000	NULL	NULL	-		
C1orf192	257177	genome.wustl.edu	37	1	161337629	161337630	+	Splice_Site	INS	-	-	A	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	161337629	161337630	-	A	INS	C1orf192	NM_001013625	human	genbank	57_37b	-1	predicted	splice_site_ins	c.27+2_27+1	e1+2	0.958:1.000	-	-	-	no_errors	
CCPG1	9236	genome.wustl.edu	37	15	55681620	55681620	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	55681620	55681620	C	G	SNP	CCPG1	NM_004748	human	genbank	57_37b	-1	validated	missense	c.3	p.M1I	1.000	NULL	NULL	-	no_errors	
CNPY3	10695	genome.wustl.edu	37	6	42906359	42906359	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	42906359	42906359	G	C	SNP	CNPY3	NM_006586	human	genbank	57_37b	+1	validated	missense	c.667	p.G223R	0.997	NULL	NULL	-	no_errors	
CORO7	79585	genome.wustl.edu	37	16	4458194	4458194	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	4458194	4458194	C	A	SNP	CORO7	NM_024535	human	genbank	57_37b	-1	validated	silent	c.291	p.S97	0.226	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,HMMPfam_DUF1900,PatternScan_WD_REPEATS_1	-	no_errors	
CUL9	23113	genome.wustl.edu	37	6	43166502	43166502	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	43166502	43166502	C	T	SNP	CUL9	NM_015089	human	genbank	57_37b	+1	validated	missense	c.2959	p.R987C	1.000	superfamily_ARM repeat	"superfamily_ARM repeat,superfamily_Galactose-binding domain-like,HMMPfam_APC10,PatternScan_CYTOCHROME_P450,HMMPfam_Cullin,superfamily_Cullin homology domain,superfamily_""Winged helix"" DNA-binding domain,PatternScan_CULLIN_1,superfamily_RING/U-box,HMMPfam_IBR,HMMSmart_SM00647,PatternScan_ZF_RING_1"	-	no_errors	
DCC	1630	genome.wustl.edu	37	18	50985621	50985621	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	50985621	50985621	G	A	SNP	DCC	NM_005215	human	genbank	57_37b	+1	reviewed	missense	c.3412	p.A1138T	0.998	HMMPfam_Neogenin_C	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_Neogenin_C	-	no_errors	
DKFZp761E198	91056	genome.wustl.edu	37	11	65545388	65545391	+	Frame_Shift_Del	DEL	TCGG	TCGG	-	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	TCGG	TCGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	65545388	65545391	TCGG	-	DEL	DKFZp761E198	NM_138368	human	genbank	57_37b	-1	validated	frame_shift_del	c.2405_2402	p.T801fs	0.358:0.353:0.075:0.964	NULL	NULL	(deletion:cds_exon[65545327,65547792])	no_errors	
DNAH7	56171	genome.wustl.edu	37	2	196749476	196749476	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	196749476	196749476	G	A	SNP	DNAH7	NM_018897	human	genbank	57_37b	-1	validated	nonsense	c.5596	p.R1866*	1.000	NULL	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,PatternScan_EF_HAND_1,HMMPfam_Dynein_heavy,PatternScan_ADH_SHORT	-	no_errors	
DND1	373863	genome.wustl.edu	37	5	140050940	140050940	+	Missense_Mutation	SNP	C	T	T	rs77880328	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140050940	140050940	C	T	SNP	DND1	NM_194249	human	genbank	57_37b	-1	provisional	missense	c.1000	p.E334K	1.000	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-		
DRD5	1816	genome.wustl.edu	37	4	9784550	9784550	+	Silent	SNP	G	G	A	rs2227844	byCluster;byFrequency	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	9784550	9784550	G	A	SNP	DRD5	NM_000798	human	genbank	57_37b	+1	reviewed	silent	c.897	p.S299	0.303	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-		
ENSG00000221243	0	genome.wustl.edu	37	6	3177621	3177621	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	3177621	3177621	G	A	SNP	ENSG00000221243	ENST00000408316	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.998	-	-	-	no_errors	
ENSG00000247772	0	genome.wustl.edu	37	11	47378995	47378995	+	RNA	SNP	C	C	T	rs59409510	byCluster;by1000genomes	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	47378995	47378995	C	T	SNP	ENSG00000247772	ENST00000499849	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.029	-	-	-		
FLII	2314	genome.wustl.edu	37	17	18155040	18155040	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	18155040	18155040	A	C	SNP	FLII	NM_002018	human	genbank	57_37b	-1	reviewed	missense	c.1337	p.L446R	1.000	superfamily_SSF55753	superfamily_SSF52047,HMMPfam_LRR_1,superfamily_SSF52058,HMMSmart_LRR_TYP,superfamily_SSF55753,HMMSmart_GEL,HMMPfam_Gelsolin	-	no_errors	
FLT1	2321	genome.wustl.edu	37	13	28896410	28896410	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	28896410	28896410	A	G	SNP	FLT1	NM_002019	human	genbank	57_37b	-1	reviewed	missense	c.3040	p.S1014P	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMSmart_SM00406,HMMPfam_I-set,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
FNIP1	96459	genome.wustl.edu	37	5	131046309	131046309	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	131046309	131046309	C	A	SNP	FNIP1	NM_133372	human	genbank	57_37b	-1	validated	missense	c.668	p.G223V	1.000	NULL	NULL	-	no_errors	
GAB4	128954	genome.wustl.edu	37	22	17468927	17468927	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	17468927	17468927	C	T	SNP	GAB4	NM_001037814	human	genbank	57_37b	-1	provisional	silent	c.609	p.P203	0.533	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors	
GREB1L	80000	genome.wustl.edu	37	18	19102675	19102675	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	19102675	19102675	C	T	SNP	GREB1L	NM_001142966	human	genbank	57_37b	+1	provisional	missense	c.5665	p.R1889C	1.000	NULL	PatternScan_ASP_PROTEASE	-	no_errors	
HOXD11	3237	genome.wustl.edu	37	2	176973668	176973668	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	176973668	176973668	C	A	SNP	HOXD11	NM_021192	human	genbank	57_37b	+1	reviewed	missense	c.815	p.P272H	1.000	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
IPO13	9670	genome.wustl.edu	37	1	44413299	44413299	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	44413299	44413299	G	T	SNP	IPO13	NM_014652	human	genbank	57_37b	+1	reviewed	silent	c.27	p.G9	1.000	NULL	superfamily_ARM-type_fold,HMMPfam_IBN_N,HMMPfam_Xpo1	-	no_errors	
KCNQ3	3786	genome.wustl.edu	37	8	133142049	133142049	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	133142049	133142049	C	T	SNP	KCNQ3	NM_004519	human	genbank	57_37b	-1	reviewed	silent	c.2079	p.P693	0.003	NULL	superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_KCNQ_channel	-	no_errors	
LIPT2	387787	genome.wustl.edu	37	11	74203306	74203306	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	74203306	74203306	T	G	SNP	LIPT2	NM_001144869	human	genbank	57_37b	-1	validated	silent	c.570	p.T190	0.853	NULL	PatternScan_LIPB,HMMPfam_BPL_LipA_LipB	-	no_errors	
LOC100288715	0	genome.wustl.edu	37	9	34552057	34552057	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	34552057	34552057	G	A	SNP	LOC100288715	XM_002342889	human	genbank	57_37b	+1	model	missense	c.100	p.G34R	0.004	NULL	NULL	-	no_errors	
LRRC41	10489	genome.wustl.edu	37	1	46746855	46746855	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	46746855	46746855	A	-	DEL	LRRC41	NM_006369	human	genbank	57_37b	-1	validated	frame_shift_del	c.1698	p.G567fs	0.983	superfamily_RNI-like	superfamily_RNI-like,HMMSmart_SM00368	(deletion:cds_exon[46746797,46747057])	no_errors	
MUC16	94025	genome.wustl.edu	37	19	9074465	9074465	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9074465	9074465	G	A	SNP	MUC16	NM_024690	human	genbank	57_37b	-1	validated	silent	c.12981	p.V4327	0.000	NULL	PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors	
MYO18A	399687	genome.wustl.edu	37	17	27401792	27401792	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	27401792	27401792	G	A	SNP	MYO18A	NM_078471	human	genbank	57_37b	-1	validated	missense	c.6161	p.A2054V	0.687	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,superfamily_Prefoldin	-	no_errors	
NWD1	284434	genome.wustl.edu	37	19	16918910	16918910	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	16918910	16918910	T	C	SNP	NWD1	NM_001007525	human	genbank	57_37b	+1	validated	missense	c.3845	p.L1282P	0.997	superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1	superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
OR51C1P	0	genome.wustl.edu	37	11	4712725	4712725	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	4712725	4712725	C	T	SNP	OR51C1P	ENST00000357764	human	ensembl	57_37b	-1	known	missense	c.202	p.A68T	0.074	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PARD3	56288	genome.wustl.edu	37	10	34400454	34400454	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	34400454	34400454	G	C	SNP	PARD3	NM_019619	human	genbank	57_37b	-1	provisional	missense	c.3714	p.D1238E	0.952	NULL	superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_PDZ	-	no_errors	
PIP5K1C	23396	genome.wustl.edu	37	19	3643289	3643289	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	3643289	3643289	G	A	SNP	PIP5K1C	NM_012398	human	genbank	57_37b	-1	reviewed	missense	c.1601	p.S534F	1.000	NULL	superfamily_SSF56104,HMMSmart_PIPKc,HMMPfam_PIP5K	-	no_errors	
PLD5	200150	genome.wustl.edu	37	1	242287770	242287770	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	242287770	242287770	C	T	SNP	PLD5	NM_152666	human	genbank	57_37b	-1	provisional	silent	c.657	p.S219	1.000	HMMPfam_PLD_envelope	superfamily_SSF56024,HMMPfam_PLDc,HMMSmart_PLDc,HMMPfam_PLD_envelope	-	no_errors	
PREX1	57580	genome.wustl.edu	37	20	47296244	47296244	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	47296244	47296244	C	T	SNP	PREX1	NM_020820	human	genbank	57_37b	-1	reviewed	missense	c.1484	p.R495H	1.000	"superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00049"	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00049,HMMPfam_DEP,superfamily_PDZ domain-like,HMMSmart_SM00228"	-	no_errors	
RB1	5925	genome.wustl.edu	37	13	48934189	48934189	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	48934189	48934189	C	G	SNP	RB1	NM_000321	human	genbank	57_37b	+1	reviewed	nonsense	c.644	p.S215*	1.000	NULL	HMMPfam_RB_A,superfamily_Cyclin-like,HMMPfam_RB_B,HMMSmart_SM00385,HMMPfam_Rb_C	-	no_errors	
RNF144A	9781	genome.wustl.edu	37	2	7179763	7179763	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	7179763	7179763	G	A	SNP	RNF144A	NM_014746	human	genbank	57_37b	+1	reviewed	missense	c.751	p.V251M	1.000	HMMSmart_RING	HMMSmart_RING,HMMPfam_IBR,HMMSmart_IBR,superfamily_SSF57850,PatternScan_ZF_RING_1	-	no_errors	
S1PR2	9294	genome.wustl.edu	37	19	10334727	10334727	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	10334727	10334727	G	A	SNP	S1PR2	NM_004230	human	genbank	57_37b	-1	validated	silent	c.855	p.P285	0.152	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
SEMA3A	10371	genome.wustl.edu	37	7	83823815	83823815	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	83823815	83823815	G	C	SNP	SEMA3A	NM_006080	human	genbank	57_37b	-1	reviewed	missense	c.88	p.P30A	1.000	superfamily_Sema	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig	-	no_errors	
SGK223	0	genome.wustl.edu	37	8	8234980	8234980	+	Missense_Mutation	SNP	G	C	C	rs35273161	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	8234980	8234980	G	C	SNP	SGK223	NM_001080826	human	genbank	57_37b	-1	validated	missense	c.939	p.S313R	0.017	NULL	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_TYR	-		
SPDEF	25803	genome.wustl.edu	37	6	34506131	34506131	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	34506131	34506131	G	A	SNP	SPDEF	NM_012391	human	genbank	57_37b	-1	provisional	missense	c.928	p.R310C	1.000	superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_2	superfamily_SAM_homology,HMMPfam_SAM_PNT,HMMSmart_SAM_PNT,superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2	-	no_errors	
SPTA1	6708	genome.wustl.edu	37	1	158615165	158615165	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158615165	158615165	G	A	SNP	SPTA1	NM_003126	human	genbank	57_37b	-1	reviewed	missense	c.4007	p.A1336V	0.950	HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150	superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_EF-hand,HMMPfam_efhand_Ca_insen	-	no_errors	
STIM1	6786	genome.wustl.edu	37	11	4091418	4091418	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	4091418	4091418	A	G	SNP	STIM1	NM_003156	human	genbank	57_37b	+1	reviewed	missense	c.776	p.H259R	1.000	NULL	PatternScan_EF_HAND_1,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_2	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7574003	7574003	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7574003	7574003	G	-	DEL	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.1024	p.R342fs	0.307	HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7573927,7574033])	no_errors	
WWP2	11060	genome.wustl.edu	37	16	69972999	69972999	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	69972999	69972999	C	-	DEL	WWP2	NM_007014	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.2413	p.V806fs	1.000	superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	(deletion:cds_exon[69972930,69973026])	no_errors	
ZBTB33	10009	genome.wustl.edu	37	X	119389284	119389285	+	Frame_Shift_Ins	INS	-	-	TA	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	119389284	119389285	-	TA	INS	ZBTB33	NM_006777	human	genbank	57_37b	+1	validated	frame_shift_ins	c.2014_2015	p.Y672fs	1.000:1.000	NULL	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors	
ZNF726	0	genome.wustl.edu	37	19	24116016	24116016	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AQ-01	TCGA-AR-A1AQ-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	24116016	24116016	G	C	SNP	ZNF726	ENST00000322487	human	ensembl	57_37b	+1	known	missense	c.1098	p.E366D	1.000	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
