Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADAMTS1	9510	genome.wustl.edu	37	21	28212320	28212320	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	28212320	28212320	C	T	SNP	ADAMTS1	NM_006988	human	genbank	57_37b	-1	reviewed	missense	c.1726	p.G576S	1.000	superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1	PatternScan_DISINTEGRIN_1,HMMPfam_Pep_M12B_propep,superfamily_SSF55486,HMMPfam_Reprolysin,PatternScan_ZINC_PROTEASE,HMMSmart_ACR,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1	-	no_errors	
ANKLE1	126549	genome.wustl.edu	37	19	17394278	17394278	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	17394278	17394278	G	T	SNP	ANKLE1	NM_152363	human	genbank	57_37b	+1	validated	silent	c.705	p.S235	0.000	NULL	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248,HMMPfam_LEM	-	no_errors	
ANKLE2	23141	genome.wustl.edu	37	12	133312082	133312082	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	133312082	133312082	T	C	SNP	ANKLE2	NM_015114	human	genbank	57_37b	-1	validated	missense	c.1610	p.K537R	0.150	NULL	HMMPfam_LEM,superfamily_LEM domain,superfamily_Ankyrin repeat	-	no_errors	
B3GNT7	93010	genome.wustl.edu	37	2	232262638	232262638	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	232262638	232262638	G	T	SNP	B3GNT7	NM_145236	human	genbank	57_37b	+1	validated	missense	c.208	p.A70S	0.000	NULL	HMMPfam_Galactosyl_T	-	no_errors	
BACH2	60468	genome.wustl.edu	37	6	90660239	90660239	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	90660239	90660239	G	A	SNP	BACH2	NM_021813	human	genbank	57_37b	-1	validated	missense	c.1586	p.A529V	1.000	NULL	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,superfamily_Euk_transcr_DNA,HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_1	-	no_errors	
C5orf62	85027	genome.wustl.edu	37	5	150158455	150158455	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	150158455	150158455	C	T	SNP	C5orf62	NM_032947	human	genbank	57_37b	+1	validated	silent	c.324	p.I108	0.000	NULL	NULL	-	no_errors	
CDC40	51362	genome.wustl.edu	37	6	110550072	110550072	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	110550072	110550072	C	T	SNP	CDC40	NM_015891	human	genbank	57_37b	+1	reviewed	silent	c.1455	p.I485	1.000	superfamily_WD40_like,HMMSmart_WD40	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
CPNE2	221184	genome.wustl.edu	37	16	57180088	57180088	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	57180088	57180088	T	C	SNP	CPNE2	NM_152727	human	genbank	57_37b	+1	reviewed	missense	c.1394	p.M465T	1.000	superfamily_SSF53300,HMMSmart_VWA,HMMPfam_Copine	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_Copine	-	no_errors	
DCHS2	54798	genome.wustl.edu	37	4	155157976	155157976	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	155157976	155157976	G	A	SNP	DCHS2	NM_017639	human	genbank	57_37b	-1	validated	missense	c.6463	p.P2155S	0.130	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1	-	no_errors	
DNAJB5	25822	genome.wustl.edu	37	9	34990767	34990767	+	Nonsense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	34990767	34990767	T	G	SNP	DNAJB5	NM_001135005	human	genbank	57_37b	+1	validated	nonsense	c.140	p.L47*	1.000	NULL	superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ,PatternScan_DNAJ_1,superfamily_HSP40/DnaJ peptide-binding domain,HMMPfam_DnaJ_C	-	no_errors	
DPP8	54878	genome.wustl.edu	37	15	65792988	65792988	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	65792988	65792988	T	G	SNP	DPP8	NM_197960	human	genbank	57_37b	-1	reviewed	missense	c.550	p.S184R	1.000	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain,HMMPfam_DPPIV_N	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain,HMMPfam_DPPIV_N,superfamily_alpha/beta-Hydrolases,HMMPfam_Peptidase_S9	-	no_errors	
EIF3I	8668	genome.wustl.edu	37	1	32694368	32694369	+	Frame_Shift_Del	DEL	GG	GG	-	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	GG	GG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	32694368	32694369	GG	-	DEL	EIF3I	NM_003757	human	genbank	57_37b	+1	validated	frame_shift_del	c.680_681	p.R227fs	1.000:1.000	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1	(deletion:cds_exon[32694328,32694417])	no_errors	
ENSG00000206587	0	genome.wustl.edu	37	11	67663113	67663113	+	RNA	SNP	G	G	A	rs2428819	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	67663113	67663113	G	A	SNP	ENSG00000206587	ENST00000383860	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-		
EPB49	2039	genome.wustl.edu	37	8	21931298	21931298	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	21931298	21931298	A	T	SNP	EPB49	NM_001114135	human	genbank	57_37b	+1	validated	missense	c.787	p.I263F	0.985	NULL	superfamily_VHP Villin headpiece domain,HMMPfam_VHP,HMMSmart_SM00153	-	no_errors	
FAM40A	85369	genome.wustl.edu	37	1	110586328	110586328	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	110586328	110586328	G	A	SNP	FAM40A	NM_033088	human	genbank	57_37b	+1	validated	missense	c.1136	p.R379Q	1.000	NULL	HMMPfam_N1221	-	no_errors	
GATA3	2625	genome.wustl.edu	37	10	8115973	8115976	+	Frame_Shift_Del	DEL	CCGC	CCGC	-	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	CCGC	CCGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8115973	8115976	CCGC	-	DEL	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1322_1325	p.A442fs	1.000:0.996:1.000:1.000	NULL	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	(deletion:cds_exon[8115702,8115986])	no_errors	
GFRA4	64096	genome.wustl.edu	37	20	3640823	3640823	+	Silent	SNP	C	C	T	rs2853208	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	3640823	3640823	C	T	SNP	GFRA4	NM_145762	human	genbank	57_37b	-1	reviewed	silent	c.801	p.P267	0.000	NULL	HMMPfam_GDNF,superfamily_GDNF receptor-like (Pfam 02351)	-		
GRIK1	2897	genome.wustl.edu	37	21	31023532	31023532	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	31023532	31023532	T	C	SNP	GRIK1	NM_000830	human	genbank	57_37b	-1	reviewed	missense	c.860	p.N287S	1.000	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan	-	no_errors	
HIST1H1B	3009	genome.wustl.edu	37	6	27835099	27835099	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	27835099	27835099	G	A	SNP	HIST1H1B	NM_005322	human	genbank	57_37b	-1	reviewed	missense	c.209	p.A70V	0.990	superfamily_SSF46785,HMMSmart_H15,HMMPfam_Linker_histone	superfamily_SSF46785,HMMSmart_H15,HMMPfam_Linker_histone	-	no_errors	
HTR2A	3356	genome.wustl.edu	37	13	47469795	47469795	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	47469795	47469795	C	T	SNP	HTR2A	NM_000621	human	genbank	57_37b	-1	reviewed	missense	c.247	p.V83I	0.061	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
IL12A	3592	genome.wustl.edu	37	3	159711616	159711620	+	Frame_Shift_Del	DEL	TGATG	TGATG	-	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	TGATG	TGATG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	159711616	159711620	TGATG	-	DEL	IL12A	NM_000882	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.591_595	p.D198fs	0.260:0.282:0.193:0.000:0.003	HMMPfam_IL12,superfamily_4_helix_cytokine	HMMPfam_IL12,superfamily_4_helix_cytokine	(deletion:cds_exon[159711488,159711631])	no_errors	
INSRR	3645	genome.wustl.edu	37	1	156813013	156813013	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156813013	156813013	T	C	SNP	INSRR	NM_014215	human	genbank	57_37b	-1	validated	missense	c.2909	p.D970G	1.000	superfamily_Kinase_like	superfamily_SSF52058,HMMPfam_Recep_L_domain,HMMPfam_Furin-like,superfamily_Grow_fac_recept,HMMSmart_FU,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_fn3,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II	-	no_errors	
LOC100130518	0	genome.wustl.edu	37	19	22487564	22487564	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	22487564	22487564	G	A	SNP	LOC100130518	XM_001719773	human	genbank	57_37b	+1	model	missense	c.316	p.E106K	0.057	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349	-	no_errors	
LOC100287827	0	genome.wustl.edu	37	11	64622048	64622048	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64622048	64622048	C	T	SNP	LOC100287827	XM_002343094	human	genbank	57_37b	+1	model	missense	c.73	p.R25C	0.039	NULL	NULL	-	no_errors	
LRBA	987	genome.wustl.edu	37	4	151356833	151356833	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	151356833	151356833	A	T	SNP	LRBA	NM_006726	human	genbank	57_37b	-1	validated	missense	c.6982	p.L2328M	1.000	superfamily_BEACH domain,HMMPfam_Beach	superfamily_ARM repeat,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors	
MAGI2	9863	genome.wustl.edu	37	7	78150872	78150881	+	Frame_Shift_Del	DEL	CTTGGAGTGG	CTTGGAGTGG	-	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	CTTGGAGTGG	CTTGGAGTGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	78150872	78150881	CTTGGAGTGG	-	DEL	MAGI2	NM_012301	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.629_620	p.A207fs	1.000:1.000:0.996:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMSmart_SM00072	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1	(deletion:cds_exon[78150747,78150962])	no_errors	
MED15	51586	genome.wustl.edu	37	22	20937198	20937198	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	20937198	20937198	C	T	SNP	MED15	NM_001003891	human	genbank	57_37b	+1	reviewed	missense	c.1481	p.T494M	0.971	NULL	HMMPfam_ARC105_Med_act	-	no_errors	
MEFV	4210	genome.wustl.edu	37	16	3299561	3299561	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	3299561	3299561	C	T	SNP	MEFV	NM_000243	human	genbank	57_37b	-1	reviewed	missense	c.1130	p.R377H	0.002	HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_B-box zinc-binding domain	superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_B-box zinc-binding domain,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449	-	no_errors	
MIER1	57708	genome.wustl.edu	37	1	67447566	67447568	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	67447566	67447568	AAG	-	DEL	MIER1	NM_020948	human	genbank	57_37b	+1	validated	in_frame_del	c.1247_1249	p.E417in_frame_del	0.998:0.975:1.000	NULL	PatternScan_EF_HAND_1,HMMPfam_ELM2,superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding	(deletion:cds_exon[67447462,67447601])	no_errors	
NUTF2	10204	genome.wustl.edu	37	16	67902441	67902441	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	67902441	67902441	C	T	SNP	NUTF2	NM_005796	human	genbank	57_37b	+1	reviewed	missense	c.209	p.A70V	1.000	superfamily_NTF2-like,HMMPfam_NTF2	superfamily_NTF2-like,HMMPfam_NTF2,PatternScan_WD_REPEATS_1	-	no_errors	
PARD3	56288	genome.wustl.edu	37	10	34620159	34620159	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	34620159	34620159	G	A	SNP	PARD3	NM_019619	human	genbank	57_37b	-1	provisional	missense	c.2728	p.R910C	1.000	NULL	superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_PDZ	-	no_errors	
PDGFRA	5156	genome.wustl.edu	37	4	55152033	55152033	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	55152033	55152033	G	A	SNP	PDGFRA	NM_006206	human	genbank	57_37b	+1	reviewed	missense	c.2465	p.R822H	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_PROTEIN_KINASE_TYR	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
PDZRN3	23024	genome.wustl.edu	37	3	73432563	73432563	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	73432563	73432563	C	T	SNP	PDZRN3	NM_015009	human	genbank	57_37b	-1	provisional	missense	c.3154	p.D1052N	0.999	NULL	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,superfamily_TRAF domain-like,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors	
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	G	G			TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
POFUT2	23275	genome.wustl.edu	37	21	46685175	46685175	+	RNA	SNP	A	A	G	rs11558445	byCluster;by1000genomes	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	46685175	46685175	A	G	SNP	POFUT2	NR_004858	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-		
PRKG2	5593	genome.wustl.edu	37	4	82125820	82125820	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	82125820	82125820	C	A	SNP	PRKG2	NM_006259	human	genbank	57_37b	-1	provisional	nonsense	c.382	p.E128*	1.000	NULL	superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X	-	no_errors	
RBMS3	27303	genome.wustl.edu	37	3	29781333	29781333	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	29781333	29781333	C	T	SNP	RBMS3	NM_001003793	human	genbank	57_37b	+1	reviewed	silent	c.522	p.D174	0.976	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors	
SDCCAG1	9147	genome.wustl.edu	37	14	50298943	50298943	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	50298943	50298943	G	A	SNP	SDCCAG1	NM_004713	human	genbank	57_37b	-1	validated	missense	c.788	p.P263L	0.997	NULL	HMMPfam_FbpA,HMMPfam_DUF814	-	no_errors	
SEPT4	5414	genome.wustl.edu	37	17	56603076	56603076	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	56603076	56603076	C	T	SNP	SEPT4	NM_004574	human	genbank	57_37b	-1	reviewed	missense	c.518	p.R173Q	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Septin	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Septin	-	no_errors	
SETD5	55209	genome.wustl.edu	37	3	9490166	9490166	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	9490166	9490166	C	A	SNP	SETD5	NM_001080517	human	genbank	57_37b	+1	provisional	missense	c.2198	p.A733E	1.000	NULL	superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317	-	no_errors	
SIRPG	55423	genome.wustl.edu	37	20	1616960	1616960	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	1616960	1616960	G	A	SNP	SIRPG	NM_018556	human	genbank	57_37b	-1	reviewed	missense	c.622	p.R208C	0.878	superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406,HMMPfam_C1-set,HMMSmart_SM00407	-	no_errors	
SLC2A3	6515	genome.wustl.edu	37	12	8083112	8083112	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	8083112	8083112	G	C	SNP	SLC2A3	NM_006931	human	genbank	57_37b	-1	validated	missense	c.637	p.L213V	1.000	superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr	superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,PatternScan_SUGAR_TRANSPORT_1	-	no_errors	
TAF4B	6875	genome.wustl.edu	37	18	23915146	23915146	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	23915146	23915146	C	G	SNP	TAF4B	NM_005640	human	genbank	57_37b	+1	validated	missense	c.2267	p.S756C	1.000	HMMPfam_TAF4	HMMPfam_TAFH,HMMSmart_SM00549,HMMPfam_TAF4,superfamily_Histone-fold	-	no_errors	
TRDN	10345	genome.wustl.edu	37	6	123576256	123576256	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	123576256	123576256	C	T	SNP	TRDN	NM_006073	human	genbank	57_37b	-1	validated	missense	c.1921	p.E641K	0.569	NULL	HMMPfam_Triadin	-	no_errors	
TULP4	56995	genome.wustl.edu	37	6	158834165	158834165	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	158834165	158834165	C	T	SNP	TULP4	NM_020245	human	genbank	57_37b	+1	validated	silent	c.321	p.F107	1.000	HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like	HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like,superfamily_TNF-like,HMMPfam_SOCS_box,superfamily_Transcriptional factor tubby C-terminal domain,HMMPfam_Tub	-	no_errors	
VCAN	1462	genome.wustl.edu	37	5	82817939	82817939	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	82817939	82817939	G	T	SNP	VCAN	NM_004385	human	genbank	57_37b	+1	reviewed	nonsense	c.3814	p.E1272*	0.844	NULL	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,superfamily_C-type lectin-like,HMMSmart_SM00445,HMMPfam_Xlink,PatternScan_LINK_1,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors	
WDR20	91833	genome.wustl.edu	37	14	102675094	102675094	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AV-01	TCGA-AR-A1AV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	102675094	102675094	G	A	SNP	WDR20	NM_181291	human	genbank	57_37b	+1	reviewed	missense	c.587	p.G196E	1.000	superfamily_WD40_like	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	-	no_errors	
