Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ANGPTL4	51129	hgsc.bcm.edu	37	19	8438683	8438683	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ANO7	50636	hgsc.bcm.edu	37	2	242154264	242154264	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARHGAP31	57514	hgsc.bcm.edu	37	3	119134491	119134491	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ASXL3	80816	hgsc.bcm.edu	37	18	31311982	31311982	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BCORL1	63035	hgsc.bcm.edu	37	X	129148822	129148822	+	Nonsense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C1QTNF9	338872	hgsc.bcm.edu	37	13	24895240	24895240	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCDC110	256309	hgsc.bcm.edu	37	4	186380243	186380243	+	Missense_Mutation	SNP	A	A	C	rs59319722	unknown	TCGA-B0-4691-01	TCGA-B0-4691-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CHD2	1106	hgsc.bcm.edu	37	15	93567834	93567834	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CHDH	55349	hgsc.bcm.edu	37	3	53853013	53853013	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
COPB1	1315	hgsc.bcm.edu	37	11	14510041	14510041	+	Nonsense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DNAJB1	3337	hgsc.bcm.edu	37	19	14627478	14627478	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DOCK6	57572	hgsc.bcm.edu	37	19	11314960	11314960	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DUSP11	8446	hgsc.bcm.edu	37	2	74001019	74001019	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FLT4	2324	hgsc.bcm.edu	37	5	180057623	180057623	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GPR113	165082	hgsc.bcm.edu	37	2	26540932	26540932	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GTF2H1	2965	hgsc.bcm.edu	37	11	18359819	18359819	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HDAC11	79885	hgsc.bcm.edu	37	3	13522780	13522780	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HERC1	8925	hgsc.bcm.edu	37	15	63932415	63932415	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HEXDC	284004	hgsc.bcm.edu	37	17	80391635	80391635	+	Silent	SNP	C	C	A	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HSPA14	51182	hgsc.bcm.edu	37	10	14893312	14893312	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HSPA1L	3305	hgsc.bcm.edu	37	6	31778695	31778695	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
IL24	11009	hgsc.bcm.edu	37	1	207072689	207072689	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ITGB7	3695	hgsc.bcm.edu	37	12	53586257	53586257	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ITPR2	3709	hgsc.bcm.edu	37	12	26809265	26809265	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LPHN3	23284	hgsc.bcm.edu	37	4	62935947	62935947	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LRRC1	55227	hgsc.bcm.edu	37	6	53787551	53787551	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LRRIQ1	84125	hgsc.bcm.edu	37	12	85439805	85439805	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MYO5B	4645	hgsc.bcm.edu	37	18	47518664	47518664	+	Silent	SNP	G	G	C	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MYOM1	8736	hgsc.bcm.edu	37	18	3154964	3154964	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NAB1	4664	hgsc.bcm.edu	37	2	191524675	191524675	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NOL4	8715	hgsc.bcm.edu	37	18	31538245	31538245	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
P2RX2	22953	hgsc.bcm.edu	37	12	133198303	133198303	+	Silent	SNP	C	C	A	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
P4HA1	5033	hgsc.bcm.edu	37	10	74806681	74806681	+	Splice_Site	SNP	A	A	C	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PHKB	5257	hgsc.bcm.edu	37	16	47622841	47622841	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PIP	5304	hgsc.bcm.edu	37	7	142832380	142832380	+	Silent	SNP	A	A	G	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PITRM1	10531	hgsc.bcm.edu	37	10	3200259	3200259	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PNMT	5409	hgsc.bcm.edu	37	17	37826360	37826360	+	Silent	SNP	A	A	G	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PNN	5411	hgsc.bcm.edu	37	14	39650383	39650383	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PRKAG2	51422	hgsc.bcm.edu	37	7	151483611	151483611	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RAD50	10111	hgsc.bcm.edu	37	5	131973813	131973813	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RG9MTD1	54931	hgsc.bcm.edu	37	3	101284157	101284157	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RLN1	6013	hgsc.bcm.edu	37	9	5339628	5339629	+	Frame_Shift_Del	DEL	AC	AC	-	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	AC	AC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SCARF1	8578	hgsc.bcm.edu	37	17	1538815	1538815	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SETD4	54093	hgsc.bcm.edu	37	21	37416207	37416207	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SIGLEC12	89858	hgsc.bcm.edu	37	19	52001300	52001300	+	Silent	SNP	C	C	A	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SORL1	6653	hgsc.bcm.edu	37	11	121498365	121498365	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SPIRE1	56907	hgsc.bcm.edu	37	18	12463349	12463349	+	Splice_Site	SNP	C	C	G	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SYCE2	256126	hgsc.bcm.edu	37	19	13011345	13011345	+	Silent	SNP	A	A	G	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SYNPO2	171024	hgsc.bcm.edu	37	4	119978853	119978853	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TMEM111	55831	hgsc.bcm.edu	37	3	10011439	10011439	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TNS4	84951	hgsc.bcm.edu	37	17	38643651	38643651	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TRPV6	55503	hgsc.bcm.edu	37	7	142571254	142571254	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
WDR43	23160	hgsc.bcm.edu	37	2	29164351	29164351	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZC3H6	376940	hgsc.bcm.edu	37	2	113089834	113089834	+	Silent	SNP	A	A	G	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZDBF2	57683	hgsc.bcm.edu	37	2	207170632	207170632	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF544	27300	hgsc.bcm.edu	37	19	58772926	58772926	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF777	27153	hgsc.bcm.edu	37	7	149133877	149133877	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNFX1	57169	hgsc.bcm.edu	37	20	47874148	47874148	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4691-01	TCGA-B0-4691-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
