Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ADAM21	8747	hgsc.bcm.edu	37	14	70925438	70925438	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
AHRR	57491	hgsc.bcm.edu	37	5	413518	413518	+	Silent	SNP	A	A	G	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
AIFM3	150209	hgsc.bcm.edu	37	22	21332205	21332205	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ATM	472	hgsc.bcm.edu	37	11	108153496	108153496	+	Silent	SNP	T	T	A	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
AURKAIP1	54998	hgsc.bcm.edu	37	1	1309259	1309259	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
B4GALNT3	283358	hgsc.bcm.edu	37	12	657254	657254	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C20orf132	140699	hgsc.bcm.edu	37	20	35752076	35752077	+	Frame_Shift_Del	DEL	CA	CA	-	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	CA	CA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C7orf61	402573	hgsc.bcm.edu	37	7	100061219	100061219	+	Nonsense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CABYR	26256	hgsc.bcm.edu	37	18	21735912	21735912	+	Silent	SNP	T	T	A	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CDR1	1038	hgsc.bcm.edu	37	X	139865947	139865947	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CLIP1	6249	hgsc.bcm.edu	37	12	122812834	122812834	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CNTNAP3	79937	hgsc.bcm.edu	37	9	39103796	39103796	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
COL21A1	81578	hgsc.bcm.edu	37	6	55942327	55942327	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CRNN	49860	hgsc.bcm.edu	37	1	152384629	152384629	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CTTNBP2NL	55917	hgsc.bcm.edu	37	1	112997122	112997122	+	Nonsense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DDIT4L	115265	hgsc.bcm.edu	37	4	101109221	101109221	+	Silent	SNP	C	C	A	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DHX40	79665	hgsc.bcm.edu	37	17	57656854	57656854	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DNAH5	1767	hgsc.bcm.edu	37	5	13793789	13793789	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DNAJC10	54431	hgsc.bcm.edu	37	2	183640093	183640093	+	Silent	SNP	T	T	C	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EXOSC2	23404	hgsc.bcm.edu	37	9	133578519	133578519	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM69C	125704	hgsc.bcm.edu	37	18	72103854	72103854	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM83B	222584	hgsc.bcm.edu	37	6	54791190	54791190	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FOXO1	2308	hgsc.bcm.edu	37	13	41134062	41134062	+	Silent	SNP	A	A	G	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FYB	2533	hgsc.bcm.edu	37	5	39137714	39137714	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
G6PD	2539	hgsc.bcm.edu	37	X	153763534	153763534	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GGT7	2686	hgsc.bcm.edu	37	20	33437824	33437824	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HEXDC	284004	hgsc.bcm.edu	37	17	80399717	80399717	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
IGF1	3479	hgsc.bcm.edu	37	12	102869464	102869464	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ITGA5	3678	hgsc.bcm.edu	37	12	54798984	54798984	+	Silent	SNP	G	G	T	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KCTD21	283219	hgsc.bcm.edu	37	11	77885169	77885169	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
L3MBTL	26013	hgsc.bcm.edu	37	20	42162041	42162041	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LAMA1	284217	hgsc.bcm.edu	37	18	7007157	7007157	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MACC1	346389	hgsc.bcm.edu	37	7	20199087	20199087	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MANEA	79694	hgsc.bcm.edu	37	6	96053922	96053922	+	Missense_Mutation	SNP	T	T	A	rs35772543	unknown	TCGA-B0-4693-01	TCGA-B0-4693-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MAP1B	4131	hgsc.bcm.edu	37	5	71495734	71495734	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MAP7D1	55700	hgsc.bcm.edu	37	1	36644627	36644627	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-B0-4693-01	TCGA-B0-4693-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MFSD5	84975	hgsc.bcm.edu	37	12	53647204	53647204	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MLH1	4292	hgsc.bcm.edu	37	3	37067407	37067407	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MYH7B	57644	hgsc.bcm.edu	37	20	33567548	33567548	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NCBP1	4686	hgsc.bcm.edu	37	9	100409780	100409780	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NFXL1	152518	hgsc.bcm.edu	37	4	47877157	47877157	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NFXL1	152518	hgsc.bcm.edu	37	4	47877194	47877194	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NOMO2	283820	hgsc.bcm.edu	37	16	18544484	18544484	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NUP93	9688	hgsc.bcm.edu	37	16	56871614	56871614	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PAX3	5077	hgsc.bcm.edu	37	2	223066781	223066781	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PCDHB11	56125	hgsc.bcm.edu	37	5	140580452	140580452	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PCDHGA5	56110	hgsc.bcm.edu	37	5	140744766	140744766	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PLA2G4A	5321	hgsc.bcm.edu	37	1	186916003	186916003	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PREB	10113	hgsc.bcm.edu	37	2	27355147	27355147	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PTPN12	5782	hgsc.bcm.edu	37	7	77256100	77256100	+	Silent	SNP	T	T	G	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PTPRO	5800	hgsc.bcm.edu	37	12	15661567	15661567	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RBM6	10180	hgsc.bcm.edu	37	3	50006037	50006037	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC12A6	9990	hgsc.bcm.edu	37	15	34546642	34546642	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC16A14	151473	hgsc.bcm.edu	37	2	230914571	230914571	+	Silent	SNP	C	C	G	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC39A13	91252	hgsc.bcm.edu	37	11	47434010	47434010	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLITRK6	84189	hgsc.bcm.edu	37	13	86370165	86370165	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SOHLH2	54937	hgsc.bcm.edu	37	13	36767945	36767945	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SORD	6652	hgsc.bcm.edu	37	15	45364534	45364534	+	Missense_Mutation	SNP	A	A	C	rs930337	unknown	TCGA-B0-4693-01	TCGA-B0-4693-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SPSB1	80176	hgsc.bcm.edu	37	1	9416577	9416577	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ST8SIA4	7903	hgsc.bcm.edu	37	5	100192026	100192026	+	Nonsense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
STARD3	10948	hgsc.bcm.edu	37	17	37816464	37816464	+	Nonsense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TBC1D19	55296	hgsc.bcm.edu	37	4	26640457	26640457	+	Splice_Site	SNP	G	G	A	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TCF25	22980	hgsc.bcm.edu	37	16	89977623	89977623	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TFB2M	64216	hgsc.bcm.edu	37	1	246720752	246720752	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TLK2	11011	hgsc.bcm.edu	37	17	60689867	60689867	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TMPRSS2	7113	hgsc.bcm.edu	37	21	42861492	42861492	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TTN	7273	hgsc.bcm.edu	37	2	179401198	179401198	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TXNDC17	84817	hgsc.bcm.edu	37	17	6545596	6545596	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
USP28	57646	hgsc.bcm.edu	37	11	113684670	113684670	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
USP6	9098	hgsc.bcm.edu	37	17	5048736	5048736	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
WSCD2	9671	hgsc.bcm.edu	37	12	108641973	108641973	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZBTB37	84614	hgsc.bcm.edu	37	1	173854955	173854955	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZFR	51663	hgsc.bcm.edu	37	5	32390431	32390431	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4693-01	TCGA-B0-4693-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
