Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ANXA6	309	hgsc.bcm.edu	37	5	150514009	150514009	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4697-01	TCGA-B0-4697-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARAF	369	hgsc.bcm.edu	37	X	47428171	47428171	+	Silent	SNP	A	A	T	novel	.	TCGA-B0-4697-01	TCGA-B0-4697-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BCAR1	9564	hgsc.bcm.edu	37	16	75263683	75263683	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4697-01	TCGA-B0-4697-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C1orf65	164127	hgsc.bcm.edu	37	1	223568115	223568115	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4697-01	TCGA-B0-4697-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCRN4L	25819	hgsc.bcm.edu	37	4	139966481	139966481	+	Silent	SNP	A	A	G	rs117737080	unknown	TCGA-B0-4697-01	TCGA-B0-4697-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CFP	5199	hgsc.bcm.edu	37	X	47489070	47489070	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4697-01	TCGA-B0-4697-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DDX27	55661	hgsc.bcm.edu	37	20	47835943	47835943	+	Silent	SNP	A	A	G	novel	.	TCGA-B0-4697-01	TCGA-B0-4697-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ELN	2006	hgsc.bcm.edu	37	7	73471995	73471995	+	Silent	SNP	T	T	C	novel	.	TCGA-B0-4697-01	TCGA-B0-4697-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GXYLT1	283464	hgsc.bcm.edu	37	12	42491287	42491287	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4697-01	TCGA-B0-4697-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ITK	3702	hgsc.bcm.edu	37	5	156608044	156608044	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4697-01	TCGA-B0-4697-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KLK10	5655	hgsc.bcm.edu	37	19	51519365	51519365	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4697-01	TCGA-B0-4697-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LAMA3	3909	hgsc.bcm.edu	37	18	21441702	21441702	+	Silent	SNP	T	T	C	rs35565501	unknown	TCGA-B0-4697-01	TCGA-B0-4697-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MUC16	94025	hgsc.bcm.edu	37	19	9021118	9021118	+	Missense_Mutation	SNP	C	C	T	rs79498466	unknown	TCGA-B0-4697-01	TCGA-B0-4697-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MUC6	4588	hgsc.bcm.edu	37	11	1018289	1018289	+	Silent	SNP	C	C	T	rs77222781	unknown	TCGA-B0-4697-01	TCGA-B0-4697-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NPHS2	7827	hgsc.bcm.edu	37	1	179521759	179521759	+	Silent	SNP	C	C	A	novel	.	TCGA-B0-4697-01	TCGA-B0-4697-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OBSCN	84033	hgsc.bcm.edu	37	1	228494722	228494722	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4697-01	TCGA-B0-4697-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PLCG1	5335	hgsc.bcm.edu	37	20	39794412	39794412	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4697-01	TCGA-B0-4697-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PRKCD	5580	hgsc.bcm.edu	37	3	53213676	53213676	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4697-01	TCGA-B0-4697-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PRKRA	8575	hgsc.bcm.edu	37	2	179307992	179307992	+	Splice_Site	SNP	A	A	T	rs114868530	unknown	TCGA-B0-4697-01	TCGA-B0-4697-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PRSS3	5646	hgsc.bcm.edu	37	9	33798037	33798037	+	Silent	SNP	T	T	C	novel	.	TCGA-B0-4697-01	TCGA-B0-4697-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RHOB	388	hgsc.bcm.edu	37	2	20647607	20647607	+	Silent	SNP	C	C	A	rs116409097	unknown	TCGA-B0-4697-01	TCGA-B0-4697-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SIAH1	6477	hgsc.bcm.edu	37	16	48396058	48396058	+	Silent	SNP	T	T	A	novel	.	TCGA-B0-4697-01	TCGA-B0-4697-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TAB1	10454	hgsc.bcm.edu	37	22	39826038	39826038	+	Silent	SNP	C	C	A	novel	.	TCGA-B0-4697-01	TCGA-B0-4697-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TOM1L2	146691	hgsc.bcm.edu	37	17	17772713	17772713	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4697-01	TCGA-B0-4697-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF385D	79750	hgsc.bcm.edu	37	3	21706406	21706406	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4697-01	TCGA-B0-4697-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
