Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ANKRD31	256006	hgsc.bcm.edu	37	5	74441847	74441847	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ART3	419	hgsc.bcm.edu	37	4	77003637	77003637	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BRAF	673	hgsc.bcm.edu	37	7	140453150	140453150	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C10orf18	54906	hgsc.bcm.edu	37	10	5789390	5789390	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CCDC13	152206	hgsc.bcm.edu	37	3	42781196	42781196	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CCDC27	148870	hgsc.bcm.edu	37	1	3669160	3669160	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CHADL	150356	hgsc.bcm.edu	37	22	41632577	41632577	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CLK1	1195	hgsc.bcm.edu	37	2	201721415	201721415	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
COL11A1	1301	hgsc.bcm.edu	37	1	103468818	103468818	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DENND5B	160518	hgsc.bcm.edu	37	12	31540556	31540556	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
F2R	2149	hgsc.bcm.edu	37	5	76028815	76028815	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAM186A	121006	hgsc.bcm.edu	37	12	50745821	50745821	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAM49A	81553	hgsc.bcm.edu	37	2	16742257	16742257	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAM9A	171482	hgsc.bcm.edu	37	X	8763259	8763259	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FHOD1	29109	hgsc.bcm.edu	37	16	67264547	67264547	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GPR112	139378	hgsc.bcm.edu	37	X	135487891	135487891	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GRM2	2912	hgsc.bcm.edu	37	3	51749554	51749555	+	Frame_Shift_Del	DEL	TT	TT	-	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	TT	TT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GSK3B	2932	hgsc.bcm.edu	37	3	119812209	119812209	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GUCY1A2	2977	hgsc.bcm.edu	37	11	106680764	106680764	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HCFC2	29915	hgsc.bcm.edu	37	12	104474558	104474558	+	Silent	SNP	G	G	T	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HERPUD2	64224	hgsc.bcm.edu	37	7	35674922	35674922	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
IFNGR1	3459	hgsc.bcm.edu	37	6	137519168	137519168	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LRP1B	53353	hgsc.bcm.edu	37	2	141135789	141135789	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LRP5	4041	hgsc.bcm.edu	37	11	68216349	68216349	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MED4	29079	hgsc.bcm.edu	37	13	48651403	48651403	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MGAT5	4249	hgsc.bcm.edu	37	2	135107382	135107382	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MUC16	94025	hgsc.bcm.edu	37	19	9085732	9085732	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NEK1	4750	hgsc.bcm.edu	37	4	170510619	170510619	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NF1	4763	hgsc.bcm.edu	37	17	29657461	29657461	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NLRP1	22861	hgsc.bcm.edu	37	17	5462474	5462474	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NOS1	4842	hgsc.bcm.edu	37	12	117728169	117728169	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NT5C3	51251	hgsc.bcm.edu	37	7	33054375	33054375	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NT5DC3	51559	hgsc.bcm.edu	37	12	104208739	104208739	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR4C6	219432	hgsc.bcm.edu	37	11	55432900	55432900	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR4D2	124538	hgsc.bcm.edu	37	17	56247641	56247641	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PIK3CA	5290	hgsc.bcm.edu	37	3	178952096	178952096	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PIK3R2	5296	hgsc.bcm.edu	37	19	18278085	18278085	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PLXNA2	5362	hgsc.bcm.edu	37	1	208390402	208390402	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PRICKLE1	144165	hgsc.bcm.edu	37	12	42864091	42864091	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PTEN	5728	hgsc.bcm.edu	37	10	89725043	89725043	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RB1	5925	hgsc.bcm.edu	37	13	48947562	48947562	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RGL1	23179	hgsc.bcm.edu	37	1	183816732	183816732	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RP1	6101	hgsc.bcm.edu	37	8	55542355	55542355	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RYR1	6261	hgsc.bcm.edu	37	19	39063890	39063890	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SHMT1	6470	hgsc.bcm.edu	37	17	18250958	18250958	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SHROOM1	134549	hgsc.bcm.edu	37	5	132158629	132158629	+	Silent	SNP	C	C	A	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SIK2	23235	hgsc.bcm.edu	37	11	111594358	111594358	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC4A1	6521	hgsc.bcm.edu	37	17	42335974	42335974	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SORCS2	57537	hgsc.bcm.edu	37	4	7668937	7668937	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SYNE1	23345	hgsc.bcm.edu	37	6	152754958	152754958	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TCF4	6925	hgsc.bcm.edu	37	18	52937099	52937099	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TP53	7157	hgsc.bcm.edu	37	17	7577580	7577580	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TRMT12	55039	hgsc.bcm.edu	37	8	125464155	125464155	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
VHL	7428	hgsc.bcm.edu	37	3	10188224	10188224	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
VPS13B	157680	hgsc.bcm.edu	37	8	100711812	100711812	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
XKR6	286046	hgsc.bcm.edu	37	8	10782233	10782233	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF345	25850	hgsc.bcm.edu	37	19	37367990	37367990	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF606	80095	hgsc.bcm.edu	37	19	58489884	58489884	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF615	284370	hgsc.bcm.edu	37	19	52496181	52496181	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-4810-01	TCGA-B0-4810-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
