Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ALDOC	230	hgsc.bcm.edu	37	17	26901230	26901230	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ANKRD26	22852	hgsc.bcm.edu	37	10	27324608	27324608	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATM	472	hgsc.bcm.edu	37	11	108178679	108178679	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BOD1L	259282	hgsc.bcm.edu	37	4	13610222	13610222	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BTAF1	9044	hgsc.bcm.edu	37	10	93784687	93784687	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CPA3	1359	hgsc.bcm.edu	37	3	148583293	148583293	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CYLC1	1538	hgsc.bcm.edu	37	X	83128364	83128364	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DNAH7	56171	hgsc.bcm.edu	37	2	196759736	196759736	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DNHD1	144132	hgsc.bcm.edu	37	11	6592961	6592961	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EPHA7	2045	hgsc.bcm.edu	37	6	93979277	93979277	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAM160B2	64760	hgsc.bcm.edu	37	8	21951993	21951994	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	TG	TG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FKBPL	63943	hgsc.bcm.edu	37	6	32097100	32097100	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FUBP1	8880	hgsc.bcm.edu	37	1	78425928	78425928	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KDM5C	8242	hgsc.bcm.edu	37	X	53239736	53239736	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KLB	152831	hgsc.bcm.edu	37	4	39436298	39436298	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LPHN2	23266	hgsc.bcm.edu	37	1	82372717	82372717	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LRIG2	9860	hgsc.bcm.edu	37	1	113633959	113633959	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LTBP4	8425	hgsc.bcm.edu	37	19	41105107	41105107	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MAP7D3	79649	hgsc.bcm.edu	37	X	135326817	135326817	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MTO1	25821	hgsc.bcm.edu	37	6	74192199	74192199	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NDUFB6	4712	hgsc.bcm.edu	37	9	32571008	32571008	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NF2	4771	hgsc.bcm.edu	37	22	30032814	30032814	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NSA2	10412	hgsc.bcm.edu	37	5	74069762	74069762	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PBRM1	55193	hgsc.bcm.edu	37	3	52637689	52637689	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PHOSPHO2	493911	hgsc.bcm.edu	37	2	170557658	170557658	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PNLIPRP3	119548	hgsc.bcm.edu	37	10	118236236	118236236	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PPBP	5473	hgsc.bcm.edu	37	4	74853701	74853701	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PPIB	5479	hgsc.bcm.edu	37	15	64448267	64448267	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PRDM9	56979	hgsc.bcm.edu	37	5	23526764	23526764	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PTPRT	11122	hgsc.bcm.edu	37	20	40710642	40710642	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RAB3C	115827	hgsc.bcm.edu	37	5	57913493	57913493	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RAD50	10111	hgsc.bcm.edu	37	5	131894990	131894990	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RBM28	55131	hgsc.bcm.edu	37	7	127950874	127950874	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RYR2	6262	hgsc.bcm.edu	37	1	237947442	237947442	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SEC63	11231	hgsc.bcm.edu	37	6	108204350	108204350	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SEMA4G	57715	hgsc.bcm.edu	37	10	102738875	102738875	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SF3B1	23451	hgsc.bcm.edu	37	2	198260796	198260796	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SMAD2	4087	hgsc.bcm.edu	37	18	45377694	45377694	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TEK	7010	hgsc.bcm.edu	37	9	27206588	27206588	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TGFBR3	7049	hgsc.bcm.edu	37	1	92184975	92184975	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TMEM100	55273	hgsc.bcm.edu	37	17	53798317	53798317	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TTC17	55761	hgsc.bcm.edu	37	11	43465707	43465707	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TTN	7273	hgsc.bcm.edu	37	2	179631262	179631262	+	Silent	SNP	G	G	T	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
WDR78	79819	hgsc.bcm.edu	37	1	67340463	67340463	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF169	169841	hgsc.bcm.edu	37	9	97062172	97062172	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF57	126295	hgsc.bcm.edu	37	19	2917940	2917940	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF829	374899	hgsc.bcm.edu	37	19	37382715	37382715	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZZEF1	23140	hgsc.bcm.edu	37	17	3945845	3945845	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B0-4816-01	TCGA-B0-4816-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
