Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCB10	23456	hgsc.bcm.edu	37	1	229683267	229683267	+	Silent	SNP	A	A	T	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ABCC9	10060	hgsc.bcm.edu	37	12	21997480	21997480	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARHGAP22	58504	hgsc.bcm.edu	37	10	49763529	49763529	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARID1A	8289	hgsc.bcm.edu	37	1	27100200	27100200	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
B4GALT4	8702	hgsc.bcm.edu	37	3	118945777	118945779	+	In_Frame_Del	DEL	TGT	TGT	-	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	TGT	TGT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C3AR1	719	hgsc.bcm.edu	37	12	8211783	8211783	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCNB3	85417	hgsc.bcm.edu	37	X	50052464	50052464	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CD300E	342510	hgsc.bcm.edu	37	17	72613554	72613554	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CHSY1	22856	hgsc.bcm.edu	37	15	101719144	101719144	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CNGB3	54714	hgsc.bcm.edu	37	8	87590984	87590984	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GIGYF2	26058	hgsc.bcm.edu	37	2	233697652	233697652	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GORASP2	26003	hgsc.bcm.edu	37	2	171804897	171804897	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GPR125	166647	hgsc.bcm.edu	37	4	22394274	22394274	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HAVCR2	84868	hgsc.bcm.edu	37	5	156514240	156514240	+	Nonsense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HECTD2	143279	hgsc.bcm.edu	37	10	93185116	93185116	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
IFNB1	3456	hgsc.bcm.edu	37	9	21077712	21077712	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KDM4B	23030	hgsc.bcm.edu	37	19	5135391	5135391	+	Silent	SNP	A	A	G	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIAA0408	9729	hgsc.bcm.edu	37	6	127767753	127767753	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KLF7	8609	hgsc.bcm.edu	37	2	207988751	207988751	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LNPEP	4012	hgsc.bcm.edu	37	5	96320855	96320855	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LYZL4	131375	hgsc.bcm.edu	37	3	42438812	42438812	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MTMR10	54893	hgsc.bcm.edu	37	15	31266580	31266580	+	Silent	SNP	A	A	G	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NCAPD3	23310	hgsc.bcm.edu	37	11	134051037	134051037	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OR2T34	127068	hgsc.bcm.edu	37	1	248737595	248737595	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PAQR3	152559	hgsc.bcm.edu	37	4	79847693	79847693	+	Silent	SNP	A	A	T	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PCDHGA12	26025	hgsc.bcm.edu	37	5	140812569	140812570	+	Frame_Shift_Del	DEL	CT	CT	-	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	CT	CT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PRUNE2	158471	hgsc.bcm.edu	37	9	79465427	79465427	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PTGDR	5729	hgsc.bcm.edu	37	14	52735100	52735100	+	Nonsense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RBM4	5936	hgsc.bcm.edu	37	11	66407209	66407209	+	Silent	SNP	G	G	T	rs113222915	unknown	TCGA-B0-4822-01	TCGA-B0-4822-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RNF148	378925	hgsc.bcm.edu	37	7	122341888	122341888	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RSPH10B2	728194	hgsc.bcm.edu	37	7	6820999	6820999	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SAP130	79595	hgsc.bcm.edu	37	2	128707901	128707901	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SETD2	29072	hgsc.bcm.edu	37	3	47158203	47158203	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC22A4	6583	hgsc.bcm.edu	37	5	131662999	131662999	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SVIL	6840	hgsc.bcm.edu	37	10	29779847	29779847	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TALDO1	6888	hgsc.bcm.edu	37	11	755932	755932	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TCERG1	10915	hgsc.bcm.edu	37	5	145862191	145862191	+	Silent	SNP	A	A	G	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TSHZ1	10194	hgsc.bcm.edu	37	18	73000294	73000294	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TTLL1	25809	hgsc.bcm.edu	37	22	43464514	43464514	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TTN	7273	hgsc.bcm.edu	37	2	179393781	179393781	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ULBP3	79465	hgsc.bcm.edu	37	6	150386572	150386572	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
USP32	84669	hgsc.bcm.edu	37	17	58348760	58348760	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
USP6NL	9712	hgsc.bcm.edu	37	10	11505110	11505110	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
WDR87	83889	hgsc.bcm.edu	37	19	38383341	38383341	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
WDTC1	23038	hgsc.bcm.edu	37	1	27587572	27587572	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
XPO5	57510	hgsc.bcm.edu	37	6	43498542	43498542	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF655	79027	hgsc.bcm.edu	37	7	99170266	99170266	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF673	55634	hgsc.bcm.edu	37	X	46332256	46332256	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF831	128611	hgsc.bcm.edu	37	20	57769303	57769303	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4822-01	TCGA-B0-4822-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
