Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACLY	47	hgsc.bcm.edu	37	17	40039402	40039402	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ADH1A	124	hgsc.bcm.edu	37	4	100205772	100205772	+	Silent	SNP	T	T	G	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ANKHD1	54882	hgsc.bcm.edu	37	5	139865230	139865230	+	Silent	SNP	T	T	A	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C20orf79	140856	hgsc.bcm.edu	37	20	18794787	18794787	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C4orf19	55286	hgsc.bcm.edu	37	4	37591832	37591832	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C8orf34	116328	hgsc.bcm.edu	37	8	69351754	69351754	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CA10	56934	hgsc.bcm.edu	37	17	49726559	49726559	+	Silent	SNP	T	T	G	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCDC28B	79140	hgsc.bcm.edu	37	1	32669934	32669936	+	In_Frame_Del	DEL	AGA	AGA	-	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	AGA	AGA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CD99	4267	hgsc.bcm.edu	37	X	2640714	2640714	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CD99L2	83692	hgsc.bcm.edu	37	X	149963727	149963727	+	Silent	SNP	G	G	T	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CENPA	1058	hgsc.bcm.edu	37	2	27015010	27015010	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CNGA3	1261	hgsc.bcm.edu	37	2	99013013	99013013	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CSNK1G1	53944	hgsc.bcm.edu	37	15	64472640	64472641	+	Frame_Shift_Ins	INS	-	-	T	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
D4S234E	27065	hgsc.bcm.edu	37	4	4389386	4389386	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DLGAP2	9228	hgsc.bcm.edu	37	8	1626460	1626461	+	In_Frame_Ins	INS	-	-	CAC	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DMXL2	23312	hgsc.bcm.edu	37	15	51773209	51773209	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EIF2AK3	9451	hgsc.bcm.edu	37	2	88892812	88892812	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM38A	9780	hgsc.bcm.edu	37	16	88787645	88787645	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM86A	196483	hgsc.bcm.edu	37	16	5143526	5143526	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FLJ10357	55701	hgsc.bcm.edu	37	14	21553992	21553992	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GAB4	128954	hgsc.bcm.edu	37	22	17472817	17472817	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GABRG2	2566	hgsc.bcm.edu	37	5	161576189	161576189	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GNG12	55970	hgsc.bcm.edu	37	1	68173341	68173341	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GYS2	2998	hgsc.bcm.edu	37	12	21699315	21699315	+	Silent	SNP	T	T	A	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HGFAC	3083	hgsc.bcm.edu	37	4	3444511	3444511	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HSPB3	8988	hgsc.bcm.edu	37	5	53751717	53751717	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
IYD	389434	hgsc.bcm.edu	37	6	150719261	150719261	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KARS	3735	hgsc.bcm.edu	37	16	75675563	75675563	+	Nonsense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KRT35	3886	hgsc.bcm.edu	37	17	39635663	39635663	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KSR1	8844	hgsc.bcm.edu	37	17	25936231	25936231	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LIMA1	51474	hgsc.bcm.edu	37	12	50642463	50642463	+	Silent	SNP	A	A	C	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LUZP2	338645	hgsc.bcm.edu	37	11	24753686	24753686	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MADD	8567	hgsc.bcm.edu	37	11	47330867	47330867	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MGAT5	4249	hgsc.bcm.edu	37	2	135160678	135160678	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MUC16	94025	hgsc.bcm.edu	37	19	9059304	9059304	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MYBPC3	4607	hgsc.bcm.edu	37	11	47371574	47371574	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NAP1L4	4676	hgsc.bcm.edu	37	11	2997279	2997279	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NDUFS2	4720	hgsc.bcm.edu	37	1	161183974	161183974	+	Silent	SNP	A	A	T	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NEB	4703	hgsc.bcm.edu	37	2	152580850	152580850	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PCDHGB1	56104	hgsc.bcm.edu	37	5	140730302	140730302	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PHOX2B	8929	hgsc.bcm.edu	37	4	41749460	41749460	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PHRF1	57661	hgsc.bcm.edu	37	11	611078	611078	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PIP5K1C	23396	hgsc.bcm.edu	37	19	3641752	3641752	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
POLH	5429	hgsc.bcm.edu	37	6	43550136	43550136	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RCOR3	55758	hgsc.bcm.edu	37	1	211451524	211451524	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SCG3	29106	hgsc.bcm.edu	37	15	51993432	51993432	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SCRN1	9805	hgsc.bcm.edu	37	7	29994903	29994903	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC41A2	84102	hgsc.bcm.edu	37	12	105239709	105239709	+	Silent	SNP	A	A	G	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TAOK2	9344	hgsc.bcm.edu	37	16	29989603	29989603	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TMTC4	84899	hgsc.bcm.edu	37	13	101277909	101277909	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TNPO2	30000	hgsc.bcm.edu	37	19	12829966	12829966	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
UBR5	51366	hgsc.bcm.edu	37	8	103283417	103283417	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
USP33	23032	hgsc.bcm.edu	37	1	78183671	78183671	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
XPO1	7514	hgsc.bcm.edu	37	2	61753621	61753621	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
XRN2	22803	hgsc.bcm.edu	37	20	21314823	21314823	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZBTB39	9880	hgsc.bcm.edu	37	12	57396664	57396664	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZRANB3	84083	hgsc.bcm.edu	37	2	135988351	135988351	+	Silent	SNP	T	T	C	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZZZ3	26009	hgsc.bcm.edu	37	1	78097613	78097613	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4833-01	TCGA-B0-4833-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
