Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA4	24	hgsc.bcm.edu	37	1	94568673	94568673	+	Silent	SNP	G	G	T	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ABCC3	8714	hgsc.bcm.edu	37	17	48765029	48765029	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ANK2	287	hgsc.bcm.edu	37	4	114179233	114179233	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ANKRD17	26057	hgsc.bcm.edu	37	4	74021354	74021354	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARHGAP42	143872	hgsc.bcm.edu	37	11	100641130	100641130	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C20orf26	26074	hgsc.bcm.edu	37	20	20140084	20140084	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCDC68	80323	hgsc.bcm.edu	37	18	52610015	52610015	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CDH8	1006	hgsc.bcm.edu	37	16	61687743	61687743	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DBX2	440097	hgsc.bcm.edu	37	12	45429899	45429899	+	Splice_Site	SNP	T	T	G	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DNAH5	1767	hgsc.bcm.edu	37	5	13830726	13830726	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ESYT1	23344	hgsc.bcm.edu	37	12	56531335	56531335	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FBXO4	26272	hgsc.bcm.edu	37	5	41929897	41929897	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
IGFBP3	3486	hgsc.bcm.edu	37	7	45957039	45957039	+	Splice_Site	SNP	C	C	G	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KCNJ12	3768	hgsc.bcm.edu	37	17	21318741	21318741	+	Silent	SNP	C	C	T	rs75113504	unknown	TCGA-B0-4837-01	TCGA-B0-4837-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIAA1467	57613	hgsc.bcm.edu	37	12	13208556	13208556	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIAA2026	158358	hgsc.bcm.edu	37	9	5968196	5968196	+	Nonsense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KLHL5	51088	hgsc.bcm.edu	37	4	39116919	39116919	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MASP1	5648	hgsc.bcm.edu	37	3	186937985	186937985	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MMP10	4319	hgsc.bcm.edu	37	11	102650297	102650297	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MYH11	4629	hgsc.bcm.edu	37	16	15932004	15932004	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NFE2L2	4780	hgsc.bcm.edu	37	2	178098945	178098945	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NRBP1	29959	hgsc.bcm.edu	37	2	27663325	27663325	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OGT	8473	hgsc.bcm.edu	37	X	70775921	70775921	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PLCH2	9651	hgsc.bcm.edu	37	1	2421272	2421272	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PNLIPRP2	5408	hgsc.bcm.edu	37	10	118383462	118383463	+	Frame_Shift_Ins	INS	-	-	A	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
POLH	5429	hgsc.bcm.edu	37	6	43550779	43550779	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PRPF8	10594	hgsc.bcm.edu	37	17	1584776	1584776	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PUF60	22827	hgsc.bcm.edu	37	8	144898831	144898831	+	Silent	SNP	G	G	C	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RGS12	6002	hgsc.bcm.edu	37	4	3432133	3432133	+	Splice_Site	SNP	G	G	T	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RTN3	10313	hgsc.bcm.edu	37	11	63486754	63486754	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SORL1	6653	hgsc.bcm.edu	37	11	121483478	121483478	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SPEM1	374768	hgsc.bcm.edu	37	17	7324560	7324560	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SYT17	51760	hgsc.bcm.edu	37	16	19195087	19195087	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TIMELESS	8914	hgsc.bcm.edu	37	12	56814823	56814823	+	Silent	SNP	C	C	G	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TIMM23	100287932	hgsc.bcm.edu	37	10	51592504	51592504	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TNS4	84951	hgsc.bcm.edu	37	17	38652467	38652467	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TRIM22	10346	hgsc.bcm.edu	37	11	5717667	5717667	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
USP17L2	377630	hgsc.bcm.edu	37	8	11995987	11995987	+	Silent	SNP	G	A	A	rs3988861	unknown	TCGA-B0-4837-01	TCGA-B0-4837-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
VHL	7428	hgsc.bcm.edu	37	3	10188216	10188216	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF292	23036	hgsc.bcm.edu	37	6	87966157	87966157	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4837-01	TCGA-B0-4837-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
