Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
BAT2L2	23215	hgsc.bcm.edu	37	1	171553099	171553099	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BPI	671	hgsc.bcm.edu	37	20	36940337	36940337	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C12orf64	283310	hgsc.bcm.edu	37	12	80750654	80750654	+	Silent	SNP	A	A	G	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CACNA2D1	781	hgsc.bcm.edu	37	7	81594953	81594953	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CD97	976	hgsc.bcm.edu	37	19	14517988	14517988	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CDH23	64072	hgsc.bcm.edu	37	10	73199633	73199633	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CLEC5A	23601	hgsc.bcm.edu	37	7	141635627	141635627	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DUSP8	1850	hgsc.bcm.edu	37	11	1580186	1580186	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EPRS	2058	hgsc.bcm.edu	37	1	220153534	220153534	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
F9	2158	hgsc.bcm.edu	37	X	138633386	138633386	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM13B	51306	hgsc.bcm.edu	37	5	137347568	137347568	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FGF20	26281	hgsc.bcm.edu	37	8	16850793	16850793	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HLA-DQB1	3119	hgsc.bcm.edu	37	6	32629891	32629891	+	Missense_Mutation	SNP	C	C	T	rs74888860	unknown	TCGA-B0-4838-01	TCGA-B0-4838-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HLA-DRB1	3123	hgsc.bcm.edu	37	6	32552039	32552039	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HLA-DRB1	3123	hgsc.bcm.edu	37	6	32552079	32552079	+	Silent	SNP	G	G	A	rs17884729	unknown	TCGA-B0-4838-01	TCGA-B0-4838-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LOXHD1	125336	hgsc.bcm.edu	37	18	44104452	44104452	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LRGUK	136332	hgsc.bcm.edu	37	7	133812227	133812227	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MTHFD1	4522	hgsc.bcm.edu	37	14	64882205	64882205	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MYO18A	399687	hgsc.bcm.edu	37	17	27417887	27417887	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NAA35	60560	hgsc.bcm.edu	37	9	88631485	88631485	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NBEA	26960	hgsc.bcm.edu	37	13	35758117	35758117	+	Silent	SNP	G	G	T	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NDUFS2	4720	hgsc.bcm.edu	37	1	161183209	161183209	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OR6S1	341799	hgsc.bcm.edu	37	14	21109071	21109071	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PAGE1	8712	hgsc.bcm.edu	37	X	49454063	49454063	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PGS1	9489	hgsc.bcm.edu	37	17	76396757	76396757	+	Splice_Site	SNP	G	G	A	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
POMT2	29954	hgsc.bcm.edu	37	14	77746380	77746380	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PPP2R3A	5523	hgsc.bcm.edu	37	3	135820908	135820908	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RIMBP2	23504	hgsc.bcm.edu	37	12	130897239	130897239	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SALL1	6299	hgsc.bcm.edu	37	16	51171109	51171109	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SIPA1L2	57568	hgsc.bcm.edu	37	1	232600814	232600814	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC36A1	206358	hgsc.bcm.edu	37	5	150847285	150847285	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SMC3	9126	hgsc.bcm.edu	37	10	112328742	112328742	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SYPL1	6856	hgsc.bcm.edu	37	7	105739686	105739686	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TANC1	85461	hgsc.bcm.edu	37	2	159992709	159992709	+	Silent	SNP	C	C	G	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
UNC80	285175	hgsc.bcm.edu	37	2	210794632	210794632	+	Silent	SNP	A	A	C	novel	.	TCGA-B0-4838-01	TCGA-B0-4838-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
