Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AMBP	259	hgsc.bcm.edu	37	9	116839007	116839007	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ANKRD17	26057	hgsc.bcm.edu	37	4	73986632	73986632	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARHGAP25	9938	hgsc.bcm.edu	37	2	69034512	69034512	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BBS2	583	hgsc.bcm.edu	37	16	56535332	56535332	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BCL2L10	10017	hgsc.bcm.edu	37	15	52402092	52402092	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BNC2	54796	hgsc.bcm.edu	37	9	16419303	16419303	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C1orf135	79000	hgsc.bcm.edu	37	1	26162205	26162205	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C2orf67	151050	hgsc.bcm.edu	37	2	210896230	210896230	+	Silent	SNP	A	A	T	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCDC80	151887	hgsc.bcm.edu	37	3	112357865	112357865	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CDH4	1002	hgsc.bcm.edu	37	20	60348075	60348075	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CDK8	1024	hgsc.bcm.edu	37	13	26911753	26911753	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
COMMD6	170622	hgsc.bcm.edu	37	13	76101979	76101979	+	Silent	SNP	G	G	A	rs77512031	unknown	TCGA-B0-4839-01	TCGA-B0-4839-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CWH43	80157	hgsc.bcm.edu	37	4	49005767	49005767	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DCLRE1A	9937	hgsc.bcm.edu	37	10	115609997	115609997	+	Silent	SNP	T	T	A	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EPT1	85465	hgsc.bcm.edu	37	2	26587766	26587766	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM83B	222584	hgsc.bcm.edu	37	6	54804856	54804856	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FHAD1	114827	hgsc.bcm.edu	37	1	15684617	15684617	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FRRS1	391059	hgsc.bcm.edu	37	1	100206440	100206440	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FTMT	94033	hgsc.bcm.edu	37	5	121188165	121188165	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FTSJ3	117246	hgsc.bcm.edu	37	17	61903958	61903958	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GRIK4	2900	hgsc.bcm.edu	37	11	120833224	120833224	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HNRPDL	9987	hgsc.bcm.edu	37	4	83347663	83347663	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HYLS1	219844	hgsc.bcm.edu	37	11	125769715	125769715	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
IFNGR1	3459	hgsc.bcm.edu	37	6	137519571	137519571	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ISCU	23479	hgsc.bcm.edu	37	12	108959179	108959179	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LRP4	4038	hgsc.bcm.edu	37	11	46914588	46914588	+	Silent	SNP	G	G	T	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NFASC	23114	hgsc.bcm.edu	37	1	204957785	204957785	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NISCH	11188	hgsc.bcm.edu	37	3	52504925	52504925	+	Splice_Site	SNP	T	T	A	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NLRP10	338322	hgsc.bcm.edu	37	11	7981300	7981300	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NXF3	56000	hgsc.bcm.edu	37	X	102337711	102337711	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ODZ2	57451	hgsc.bcm.edu	37	5	167689204	167689204	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PABPC1	26986	hgsc.bcm.edu	37	8	101725408	101725408	+	Silent	SNP	C	C	G	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PABPC1	26986	hgsc.bcm.edu	37	8	101727796	101727796	+	Silent	SNP	T	T	C	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PABPC3	5042	hgsc.bcm.edu	37	13	25671755	25671755	+	Silent	SNP	G	G	A	rs116223079	unknown	TCGA-B0-4839-01	TCGA-B0-4839-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PABPC3	5042	hgsc.bcm.edu	37	13	25671759	25671759	+	Missense_Mutation	SNP	C	C	T	rs115121649	unknown	TCGA-B0-4839-01	TCGA-B0-4839-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PAF1	54623	hgsc.bcm.edu	37	19	39876968	39876968	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PPAP2C	8612	hgsc.bcm.edu	37	19	287592	287592	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PRUNE2	158471	hgsc.bcm.edu	37	9	79318381	79318381	+	Silent	SNP	A	A	T	rs113471142	unknown	TCGA-B0-4839-01	TCGA-B0-4839-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RANBP3L	202151	hgsc.bcm.edu	37	5	36301485	36301485	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RC3H1	149041	hgsc.bcm.edu	37	1	173916561	173916561	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RTKN	6242	hgsc.bcm.edu	37	2	74657145	74657145	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SDAD1	55153	hgsc.bcm.edu	37	4	76878693	76878693	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SNAP23	8773	hgsc.bcm.edu	37	15	42822003	42822003	+	Nonsense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
STC1	6781	hgsc.bcm.edu	37	8	23702339	23702339	+	Silent	SNP	G	G	T	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
STX19	415117	hgsc.bcm.edu	37	3	93733631	93733631	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TCP11	6954	hgsc.bcm.edu	37	6	35089937	35089937	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TPPP3	51673	hgsc.bcm.edu	37	16	67424948	67424948	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TPSD1	23430	hgsc.bcm.edu	37	16	1306973	1306973	+	Missense_Mutation	SNP	A	A	G	rs79313952	unknown	TCGA-B0-4839-01	TCGA-B0-4839-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
USH2A	7399	hgsc.bcm.edu	37	1	216061915	216061915	+	Silent	SNP	T	T	C	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
VHL	7428	hgsc.bcm.edu	37	3	10191485	10191485	+	Nonsense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
WHSC1L1	54904	hgsc.bcm.edu	37	8	38205403	38205403	+	Nonsense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZC3H6	376940	hgsc.bcm.edu	37	2	113067654	113067654	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF438	220929	hgsc.bcm.edu	37	10	31137593	31137593	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF532	55205	hgsc.bcm.edu	37	18	56585627	56585627	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4839-01	TCGA-B0-4839-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF778	197320	hgsc.bcm.edu	37	16	89294595	89294595	+	Silent	SNP	C	C	T	rs74466939	unknown	TCGA-B0-4839-01	TCGA-B0-4839-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
