Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ARNT	405	hgsc.bcm.edu	37	1	150789853	150789853	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARRDC3	57561	hgsc.bcm.edu	37	5	90671371	90671371	+	Silent	SNP	T	T	C	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BACH1	571	hgsc.bcm.edu	37	21	30714963	30714963	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BVES	11149	hgsc.bcm.edu	37	6	105549032	105549032	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C3orf67	200844	hgsc.bcm.edu	37	3	58739534	58739534	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CD300LB	124599	hgsc.bcm.edu	37	17	72527588	72527588	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CD82	3732	hgsc.bcm.edu	37	11	44640632	44640632	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CEACAM5	1048	hgsc.bcm.edu	37	19	42213868	42213868	+	Missense_Mutation	SNP	A	A	G	rs34155934	unknown	TCGA-B0-4843-01	TCGA-B0-4843-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CGN	57530	hgsc.bcm.edu	37	1	151498197	151498197	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
COL4A3	1285	hgsc.bcm.edu	37	2	228131178	228131178	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CSGALNACT1	55790	hgsc.bcm.edu	37	8	19263574	19263574	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CYB5R2	51700	hgsc.bcm.edu	37	11	7686754	7686754	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B0-4843-01	TCGA-B0-4843-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DPM1	8813	hgsc.bcm.edu	37	20	49574946	49574946	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DYNC1H1	1778	hgsc.bcm.edu	37	14	102505179	102505179	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EXOC3L2	90332	hgsc.bcm.edu	37	19	45731306	45731306	+	Silent	SNP	T	T	C	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GPR115	221393	hgsc.bcm.edu	37	6	47681783	47681783	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GPR152	390212	hgsc.bcm.edu	37	11	67218864	67218864	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIAA0226	9711	hgsc.bcm.edu	37	3	197427934	197427934	+	Nonsense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIF1B	23095	hgsc.bcm.edu	37	1	10318706	10318706	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIF27	55582	hgsc.bcm.edu	37	9	86502010	86502010	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KRTAP12-3	386683	hgsc.bcm.edu	37	21	46078132	46078132	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LINGO2	158038	hgsc.bcm.edu	37	9	27948987	27948987	+	Silent	SNP	A	A	C	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LRP2	4036	hgsc.bcm.edu	37	2	170027076	170027076	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B0-4843-01	TCGA-B0-4843-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LRRK2	120892	hgsc.bcm.edu	37	12	40758835	40758835	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MAGEC1	9947	hgsc.bcm.edu	37	X	140994462	140994462	+	Missense_Mutation	SNP	A	C	C	rs56675069	unknown	TCGA-B0-4843-01	TCGA-B0-4843-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MAGI2	9863	hgsc.bcm.edu	37	7	78119122	78119122	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MASP2	10747	hgsc.bcm.edu	37	1	11103047	11103047	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MPZL3	196264	hgsc.bcm.edu	37	11	118106270	118106270	+	Silent	SNP	A	A	G	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MRPS36	92259	hgsc.bcm.edu	37	5	68522165	68522165	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MSI1	4440	hgsc.bcm.edu	37	12	120805824	120805824	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MUC16	94025	hgsc.bcm.edu	37	19	9074004	9074004	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MUC4	4585	hgsc.bcm.edu	37	3	195510762	195510762	+	Silent	SNP	G	G	A	rs2911273	unknown	TCGA-B0-4843-01	TCGA-B0-4843-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PDHX	8050	hgsc.bcm.edu	37	11	35016578	35016578	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PIWIL3	440822	hgsc.bcm.edu	37	22	25145728	25145728	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
POTED	317754	hgsc.bcm.edu	37	21	15013714	15013714	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PROX1	5629	hgsc.bcm.edu	37	1	214170598	214170598	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PTGS2	5743	hgsc.bcm.edu	37	1	186646028	186646028	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RALGAPB	57148	hgsc.bcm.edu	37	20	37146211	37146211	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SERPINA12	145264	hgsc.bcm.edu	37	14	94964183	94964183	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SMARCA4	6597	hgsc.bcm.edu	37	19	11145750	11145750	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SSX2IP	117178	hgsc.bcm.edu	37	1	85117601	85117601	+	Nonsense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
STARD3NL	83930	hgsc.bcm.edu	37	7	38256830	38256830	+	Silent	SNP	T	T	A	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TDRD5	163589	hgsc.bcm.edu	37	1	179561765	179561765	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
UGT3A1	133688	hgsc.bcm.edu	37	5	35988576	35988576	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
UQCRC2	7385	hgsc.bcm.edu	37	16	21982911	21982911	+	Silent	SNP	T	T	C	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
WDR44	54521	hgsc.bcm.edu	37	X	117540945	117540945	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
YLPM1	56252	hgsc.bcm.edu	37	14	75266224	75266224	+	Silent	SNP	T	T	A	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF192	7745	hgsc.bcm.edu	37	6	28116332	28116332	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF43	7594	hgsc.bcm.edu	37	19	21992281	21992281	+	Silent	SNP	A	A	C	novel	.	TCGA-B0-4843-01	TCGA-B0-4843-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
