Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AGBL3	340351	hgsc.bcm.edu	37	7	134722286	134722286	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARMC4	55130	hgsc.bcm.edu	37	10	28233854	28233854	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ATP1A2	477	hgsc.bcm.edu	37	1	160109458	160109458	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ATXN7L1	222255	hgsc.bcm.edu	37	7	105516948	105516948	+	Silent	SNP	T	T	C	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BAZ2B	29994	hgsc.bcm.edu	37	2	160289731	160289731	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BCR	613	hgsc.bcm.edu	37	22	23523338	23523338	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C14orf37	145407	hgsc.bcm.edu	37	14	58471778	58471778	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C4orf41	60684	hgsc.bcm.edu	37	4	184615163	184615163	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CD302	9936	hgsc.bcm.edu	37	2	160628387	160628387	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CDH4	1002	hgsc.bcm.edu	37	20	60498753	60498753	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CHP	11261	hgsc.bcm.edu	37	15	41571548	41571548	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CLDN4	1364	hgsc.bcm.edu	37	7	73245846	73245846	+	Silent	SNP	C	C	G	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DAB1	1600	hgsc.bcm.edu	37	1	57476856	57476856	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DKK2	27123	hgsc.bcm.edu	37	4	107956637	107956637	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DOCK4	9732	hgsc.bcm.edu	37	7	111508084	111508084	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EVPL	2125	hgsc.bcm.edu	37	17	74003640	74003640	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
F2	2147	hgsc.bcm.edu	37	11	46760838	46760838	+	Nonsense_Mutation	SNP	T	T	G	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
H2AFZ	3015	hgsc.bcm.edu	37	4	100869967	100869967	+	Splice_Site	SNP	C	C	A	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
JAK1	3716	hgsc.bcm.edu	37	1	65335066	65335066	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KDM5A	5927	hgsc.bcm.edu	37	12	419082	419082	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIAA1429	25962	hgsc.bcm.edu	37	8	95541534	95541534	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIF1A	547	hgsc.bcm.edu	37	2	241722488	241722488	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LDB3	11155	hgsc.bcm.edu	37	10	88476148	88476148	+	Silent	SNP	C	C	A	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LDLRAD2	401944	hgsc.bcm.edu	37	1	22148091	22148091	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MALT1	10892	hgsc.bcm.edu	37	18	56414893	56414893	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MAP4K2	5871	hgsc.bcm.edu	37	11	64564471	64564471	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MASTL	84930	hgsc.bcm.edu	37	10	27458935	27458935	+	Silent	SNP	A	A	C	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MCPH1	79648	hgsc.bcm.edu	37	8	6302310	6302310	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NBN	4683	hgsc.bcm.edu	37	8	90983413	90983413	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NRXN3	9369	hgsc.bcm.edu	37	14	79432483	79432483	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NUF2	83540	hgsc.bcm.edu	37	1	163309266	163309266	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PBRM1	55193	hgsc.bcm.edu	37	3	52661388	52661388	+	Splice_Site	SNP	T	T	A	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PCDHGB2	56103	hgsc.bcm.edu	37	5	140740213	140740213	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PCMTD1	115294	hgsc.bcm.edu	37	8	52773471	52773471	+	Nonsense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PCNXL3	399909	hgsc.bcm.edu	37	11	65396339	65396339	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PIK3R6	146850	hgsc.bcm.edu	37	17	8722497	8722497	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PROM2	150696	hgsc.bcm.edu	37	2	95947011	95947011	+	Silent	SNP	C	C	G	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PTPN18	26469	hgsc.bcm.edu	37	2	131128530	131128530	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RAGE	5891	hgsc.bcm.edu	37	14	102729952	102729952	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RBM20	282996	hgsc.bcm.edu	37	10	112579880	112579880	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RNF150	57484	hgsc.bcm.edu	37	4	141888943	141888943	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SETD2	29072	hgsc.bcm.edu	37	3	47144879	47144879	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SNX13	23161	hgsc.bcm.edu	37	7	17841262	17841262	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TBC1D8B	54885	hgsc.bcm.edu	37	X	106116882	106116882	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TRIL	9865	hgsc.bcm.edu	37	7	28997373	28997373	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TTC28	23331	hgsc.bcm.edu	37	22	28559427	28559427	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
UGT8	7368	hgsc.bcm.edu	37	4	115597317	115597317	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
VN1R4	317703	hgsc.bcm.edu	37	19	53770021	53770021	+	Nonsense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
WNK1	65125	hgsc.bcm.edu	37	12	971279	971279	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4845-01	TCGA-B0-4845-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
