Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCC3	8714	hgsc.bcm.edu	37	17	48761334	48761334	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ADAMTS18	170692	hgsc.bcm.edu	37	16	77401389	77401389	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ADAMTS20	80070	hgsc.bcm.edu	37	12	43819454	43819454	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ADCY2	108	hgsc.bcm.edu	37	5	7706858	7706858	+	Nonsense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
AKAP1	8165	hgsc.bcm.edu	37	17	55184151	55184151	+	Silent	SNP	T	T	C	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BBX	56987	hgsc.bcm.edu	37	3	107429337	107429337	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BFSP1	631	hgsc.bcm.edu	37	20	17475631	17475631	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C15orf27	123591	hgsc.bcm.edu	37	15	76449034	76449034	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C22orf30	253143	hgsc.bcm.edu	37	22	32113207	32113207	+	Silent	SNP	C	C	G	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C6orf132	647024	hgsc.bcm.edu	37	6	42072710	42072715	+	In_Frame_Del	DEL	CTCCTC	CTCCTC	-	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	CTCCTC	CTCCTC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C7orf11	136647	hgsc.bcm.edu	37	7	40172756	40172756	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DICER1	23405	hgsc.bcm.edu	37	14	95582928	95582928	+	Silent	SNP	A	A	G	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EGFLAM	133584	hgsc.bcm.edu	37	5	38337657	38337657	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EXOSC8	11340	hgsc.bcm.edu	37	13	37580087	37580087	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAF1	11124	hgsc.bcm.edu	37	1	50941223	50941223	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAR1	84188	hgsc.bcm.edu	37	11	13734516	13734516	+	Silent	SNP	A	A	T	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FBXO9	26268	hgsc.bcm.edu	37	6	52957228	52957228	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FERMT3	83706	hgsc.bcm.edu	37	11	63990880	63990880	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
IARS	3376	hgsc.bcm.edu	37	9	95050488	95050488	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
IRX6	79190	hgsc.bcm.edu	37	16	55360271	55360271	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIAA1797	54914	hgsc.bcm.edu	37	9	20758088	20758088	+	Splice_Site	SNP	G	G	T	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KRT75	9119	hgsc.bcm.edu	37	12	52824455	52824455	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LAMP2	3920	hgsc.bcm.edu	37	X	119581775	119581775	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LONP2	83752	hgsc.bcm.edu	37	16	48385510	48385510	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MAP4K3	8491	hgsc.bcm.edu	37	2	39552914	39552914	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NOMO2	283820	hgsc.bcm.edu	37	16	18522873	18522873	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
P2RY8	286530	hgsc.bcm.edu	37	X	1585211	1585211	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PARP15	165631	hgsc.bcm.edu	37	3	122324838	122324838	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PKN2	5586	hgsc.bcm.edu	37	1	89298945	89298945	+	Silent	SNP	T	T	C	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PTGFR	5737	hgsc.bcm.edu	37	1	78958563	78958563	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RGNEF	64283	hgsc.bcm.edu	37	5	73144821	73144821	+	Silent	SNP	T	T	C	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RIOK1	83732	hgsc.bcm.edu	37	6	7410657	7410657	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SETBP1	26040	hgsc.bcm.edu	37	18	42281648	42281648	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC25A44	9673	hgsc.bcm.edu	37	1	156169866	156169866	+	Silent	SNP	G	G	T	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SUPV3L1	6832	hgsc.bcm.edu	37	10	70960220	70960220	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SYNE2	23224	hgsc.bcm.edu	37	14	64493398	64493399	+	Frame_Shift_Ins	INS	-	-	G	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TGS1	96764	hgsc.bcm.edu	37	8	56717519	56717519	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TOPBP1	11073	hgsc.bcm.edu	37	3	133347540	133347540	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TRIM29	23650	hgsc.bcm.edu	37	11	119996484	119996484	+	Silent	SNP	C	C	G	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
UPF3B	65109	hgsc.bcm.edu	37	X	118974623	118974623	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
VPS26B	112936	hgsc.bcm.edu	37	11	134095128	134095128	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
WWP1	11059	hgsc.bcm.edu	37	8	87424056	87424056	+	Silent	SNP	T	T	C	novel	.	TCGA-B0-4846-01	TCGA-B0-4846-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
