Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACACA	31	hgsc.bcm.edu	37	17	35640308	35640308	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ADAMTS20	80070	hgsc.bcm.edu	37	12	43769952	43769952	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ADCK2	90956	hgsc.bcm.edu	37	7	140387007	140387007	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
AVIL	10677	hgsc.bcm.edu	37	12	58202005	58202005	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BCL9	607	hgsc.bcm.edu	37	1	147096204	147096204	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BUB3	9184	hgsc.bcm.edu	37	10	124917322	124917322	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C10orf47	254427	hgsc.bcm.edu	37	10	11894170	11894170	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CD46	4179	hgsc.bcm.edu	37	1	207958438	207958438	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CDAN1	146059	hgsc.bcm.edu	37	15	43021465	43021465	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CEP110	11064	hgsc.bcm.edu	37	9	123870184	123870184	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
COL4A5	1287	hgsc.bcm.edu	37	X	107929324	107929324	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CTSL1	1514	hgsc.bcm.edu	37	9	90343025	90343026	+	Frame_Shift_Del	DEL	AC	AC	-	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	AC	AC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DSP	1832	hgsc.bcm.edu	37	6	7585750	7585750	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EMR3	84658	hgsc.bcm.edu	37	19	14736333	14736333	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ERF	2077	hgsc.bcm.edu	37	19	42753474	42753474	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HCLS1	3059	hgsc.bcm.edu	37	3	121366274	121366274	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HGC6.3	100128124	hgsc.bcm.edu	37	6	168377136	168377136	+	Missense_Mutation	SNP	T	T	G	rs77639335	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HIPK3	10114	hgsc.bcm.edu	37	11	33308074	33308074	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ITPRIP	85450	hgsc.bcm.edu	37	10	106074435	106074435	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KCNJ12	3768	hgsc.bcm.edu	37	17	21319311	21319311	+	Silent	SNP	C	C	T	rs72846668	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KCTD12	115207	hgsc.bcm.edu	37	13	77459423	77459423	+	Silent	SNP	C	C	G	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KLHL7	55975	hgsc.bcm.edu	37	7	23183605	23183605	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LILRA2	11027	hgsc.bcm.edu	37	19	55085805	55085805	+	Silent	SNP	C	C	A	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MAP3K4	4216	hgsc.bcm.edu	37	6	161519381	161519381	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MED12L	116931	hgsc.bcm.edu	37	3	150874118	150874118	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MUC21	394263	hgsc.bcm.edu	37	6	30954356	30954356	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NHSL1	57224	hgsc.bcm.edu	37	6	138753025	138753025	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OCRL	4952	hgsc.bcm.edu	37	X	128720994	128720994	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR3A2	4995	hgsc.bcm.edu	37	17	3181512	3181512	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OTOF	9381	hgsc.bcm.edu	37	2	26684967	26684967	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PBRM1	55193	hgsc.bcm.edu	37	3	52623124	52623124	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PPP2R5A	5525	hgsc.bcm.edu	37	1	212506854	212506854	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PRRG3	79057	hgsc.bcm.edu	37	X	150869198	150869198	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RBM19	9904	hgsc.bcm.edu	37	12	114364985	114364985	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ROR1	4919	hgsc.bcm.edu	37	1	64643566	64643566	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RRP8	23378	hgsc.bcm.edu	37	11	6621799	6621800	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SCN7A	6332	hgsc.bcm.edu	37	2	167289087	167289087	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SEC24D	9871	hgsc.bcm.edu	37	4	119718966	119718966	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SERPINB11	89778	hgsc.bcm.edu	37	18	61390295	61390295	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC13A3	64849	hgsc.bcm.edu	37	20	45192089	45192089	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC15A5	729025	hgsc.bcm.edu	37	12	16410792	16410792	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SPTLC2	9517	hgsc.bcm.edu	37	14	78045381	78045381	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TEC	7006	hgsc.bcm.edu	37	4	48148400	48148400	+	Silent	SNP	A	A	T	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TMCC3	57458	hgsc.bcm.edu	37	12	94975953	94975953	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
UBA1	7317	hgsc.bcm.edu	37	X	47062342	47062342	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ULK4	54986	hgsc.bcm.edu	37	3	41795894	41795895	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
USP18	11274	hgsc.bcm.edu	37	22	18643020	18643020	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
VPS18	57617	hgsc.bcm.edu	37	15	41192166	41192166	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
WT1	7490	hgsc.bcm.edu	37	11	32413576	32413576	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZBTB46	140685	hgsc.bcm.edu	37	20	62407316	62407316	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF846	162993	hgsc.bcm.edu	37	19	9868184	9868184	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-4852-01	TCGA-B0-4852-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
