Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCG4	64137	broad.mit.edu	37	11	119029566	119029566	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ADAM29	11086	broad.mit.edu	37	4	175898804	175898804	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ADAMTS19	171019	broad.mit.edu	37	5	129015555	129015555	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ADAT3	113179	broad.mit.edu	37	19	1913029	1913030	+	Missense_Mutation	DNP	CG	GT	GT	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	CG	CG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ANO5	203859	broad.mit.edu	37	11	22242734	22242734	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ARHGEF17	9828	broad.mit.edu	37	11	73066597	73066597	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ARSH	347527	broad.mit.edu	37	X	2951181	2951181	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ASAP2	8853	broad.mit.edu	37	2	9514884	9514884	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BRCA2	675	broad.mit.edu	37	13	32899270	32899270	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CA14	23632	broad.mit.edu	37	1	150235516	150235516	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CELSR3	1951	broad.mit.edu	37	3	48697119	48697119	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CEP57	9702	broad.mit.edu	37	11	95564238	95564238	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CEP57	9702	broad.mit.edu	37	11	95564248	95564248	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CHD4	1108	broad.mit.edu	37	12	6701596	6701596	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CPSF1	29894	broad.mit.edu	37	8	145634429	145634429	+	Silent	SNP	G	C	C	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CRYGA	1418	broad.mit.edu	37	2	209028037	209028037	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DBN1	1627	broad.mit.edu	37	5	176893974	176893974	+	Silent	SNP	C	A	A	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
F12	2161	broad.mit.edu	37	5	176831333	176831333	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
F2RL2	2151	broad.mit.edu	37	5	75913608	75913608	+	Silent	SNP	C	A	A	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM83G	644815	broad.mit.edu	37	17	18907263	18907263	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92590423	92590423	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HTR7	3363	broad.mit.edu	37	10	92508881	92508881	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HYAL2	8692	broad.mit.edu	37	3	50357640	50357640	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IRS1	3667	broad.mit.edu	37	2	227661146	227661146	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
JMJD7-PLA2G4B	8681	broad.mit.edu	37	15	42137191	42137191	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
JPH3	57338	broad.mit.edu	37	16	87677876	87677876	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KDM5C	8242	broad.mit.edu	37	X	53231127	53231127	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KRT1	3848	broad.mit.edu	37	12	53069236	53069256	+	In_Frame_Del	DEL	TAGCTGCTACCTCCGGAGCCA	-	-	rs77846840;rs61226348	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	TAGCTGCTACCTCCGGAGCCA	TAGCTGCTACCTCCGGAGCCA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KRTAP5-5	439915	broad.mit.edu	37	11	1651191	1651199	+	In_Frame_Del	DEL	GGCTGTGGA	-	-	rs35089393	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	GGCTGTGGA	GGCTGTGGA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LHFPL1	340596	broad.mit.edu	37	X	111874741	111874741	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LOXL2	4017	broad.mit.edu	37	8	23217701	23217701	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRRC16A	55604	broad.mit.edu	37	6	25509937	25509937	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MADD	8567	broad.mit.edu	37	11	47336865	47336865	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MBD6	114785	broad.mit.edu	37	12	57919671	57919671	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90513110	90513110	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MPDZ	8777	broad.mit.edu	37	9	13221425	13221427	+	In_Frame_Del	DEL	TCC	-	-	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	TCC	TCC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MRAS	22808	broad.mit.edu	37	3	138117372	138117372	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78400326	78400326	+	Silent	SNP	C	G	G	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NRXN2	9379	broad.mit.edu	37	11	64434814	64434814	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR2AE1	81392	broad.mit.edu	37	7	99474477	99474477	+	Silent	SNP	A	G	G	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29629166	29629166	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PAGE5	90737	broad.mit.edu	37	X	55247874	55247874	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PIGM	93183	broad.mit.edu	37	1	160001252	160001252	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RAI1	10743	broad.mit.edu	37	17	17696713	17696713	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RBPMS	11030	broad.mit.edu	37	8	30402150	30402150	+	Silent	SNP	T	C	C	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC23A2	9962	broad.mit.edu	37	20	4880292	4880292	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SSFA2	6744	broad.mit.edu	37	2	182774683	182774683	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SURF4	6836	broad.mit.edu	37	9	136233529	136233529	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TBC1D3	729873	broad.mit.edu	37	17	36288290	36288290	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TBX6	6911	broad.mit.edu	37	16	30099894	30099894	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TDP2	51567	broad.mit.edu	37	6	24658870	24658870	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TNKS	8658	broad.mit.edu	37	8	9413533	9413533	+	Silent	SNP	G	T	T	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TRIM41	90933	broad.mit.edu	37	5	180651530	180651530	+	Silent	SNP	T	A	A	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TTC39B	158219	broad.mit.edu	37	9	15211317	15211317	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UBQLNL	143630	broad.mit.edu	37	11	5537653	5537653	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
USP43	124739	broad.mit.edu	37	17	9559806	9559806	+	Silent	SNP	A	G	G	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZKSCAN1	7586	broad.mit.edu	37	7	99631276	99631276	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF518A	9849	broad.mit.edu	37	10	97920188	97920188	+	Silent	SNP	T	C	C	novel	unknown	TCGA-B0-5077-01	TCGA-B0-5077-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
