Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AFP	174	broad.mit.edu	37	4	74310812	74310812	+	Silent	SNP	A	C	C	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AKR1E2	83592	broad.mit.edu	37	10	4872931	4872931	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AQP12A	375318	broad.mit.edu	37	2	241631447	241631447	+	Silent	SNP	G	C	C	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ARSF	416	broad.mit.edu	37	X	2990179	2990179	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32754720	32754720	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30795588	30795588	+	Silent	SNP	T	A	A	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C4orf41	60684	broad.mit.edu	37	4	184600619	184600619	+	Silent	SNP	T	C	C	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	141015984	141015984	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CARD11	84433	broad.mit.edu	37	7	2953040	2953040	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CCDC51	79714	broad.mit.edu	37	3	48475152	48475152	+	Silent	SNP	A	G	G	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CCDC80	151887	broad.mit.edu	37	3	112357811	112357811	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CCR6	1235	broad.mit.edu	37	6	167550763	167550763	+	Missense_Mutation	SNP	G	A	A	rs113115632	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CD34	947	broad.mit.edu	37	1	208062095	208062095	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CLEC9A	283420	broad.mit.edu	37	12	10205346	10205346	+	Nonsense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101824283	101824284	+	Missense_Mutation	DNP	CT	AA	AA	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	CT	CT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107431882	107431882	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130300741	130300741	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CSAD	51380	broad.mit.edu	37	12	53566220	53566220	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	51013268	51013268	+	Silent	SNP	C	A	A	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	31187596	31187596	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DRD5	1816	broad.mit.edu	37	4	9784028	9784028	+	Silent	SNP	T	C	C	rs2227841	byFrequency	TCGA-B0-5081-01	TCGA-B0-5081-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EDC4	23644	broad.mit.edu	37	16	67909957	67909957	+	Silent	SNP	T	A	A	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM83B	222584	broad.mit.edu	37	6	54791297	54791297	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152277134	152277134	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPR45	11250	broad.mit.edu	37	2	105859407	105859407	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HIF1A	3091	broad.mit.edu	37	14	62204819	62204819	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HSPG2	3339	broad.mit.edu	37	1	22214100	22214100	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IDH3B	3420	broad.mit.edu	37	20	2644813	2644813	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IKBKAP	8518	broad.mit.edu	37	9	111674608	111674609	+	Missense_Mutation	DNP	CC	AA	AA	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	CC	CC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IL6ST	3572	broad.mit.edu	37	5	55247810	55247810	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IRX2	153572	broad.mit.edu	37	5	2748714	2748714	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KCNN2	3781	broad.mit.edu	37	5	113698506	113698506	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIAA1462	57608	broad.mit.edu	37	10	30316404	30316404	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KLHL3	26249	broad.mit.edu	37	5	136974757	136974757	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KRT72	140807	broad.mit.edu	37	12	52981617	52981617	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KRT85	3891	broad.mit.edu	37	12	52756666	52756666	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LATS1	9113	broad.mit.edu	37	6	150001394	150001394	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LGR5	8549	broad.mit.edu	37	12	71977609	71977609	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LLGL1	3996	broad.mit.edu	37	17	18137246	18137246	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MMAB	326625	broad.mit.edu	37	12	110006594	110006594	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MRGPRD	116512	broad.mit.edu	37	11	68748065	68748065	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NCL	4691	broad.mit.edu	37	2	232324938	232324938	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NIPA1	123606	broad.mit.edu	37	15	23048907	23048907	+	Silent	SNP	C	G	G	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NOX1	27035	broad.mit.edu	37	X	100117451	100117451	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NPW	283869	broad.mit.edu	37	16	2070178	2070178	+	Silent	SNP	C	A	A	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OCRL	4952	broad.mit.edu	37	X	128721003	128721003	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR8B8	26493	broad.mit.edu	37	11	124310503	124310503	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR8J3	81168	broad.mit.edu	37	11	55904779	55904779	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PELO	53918	broad.mit.edu	37	5	52096856	52096856	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PLA2G4E	123745	broad.mit.edu	37	15	42293414	42293414	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PMFBP1	83449	broad.mit.edu	37	16	72157483	72157483	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
POLN	353497	broad.mit.edu	37	4	2073957	2073957	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
POLR2A	5430	broad.mit.edu	37	17	7416613	7416613	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PYDC2	152138	broad.mit.edu	37	3	191178998	191178998	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RHOT2	89941	broad.mit.edu	37	16	720686	720686	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SENP6	26054	broad.mit.edu	37	6	76369015	76369015	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SETD2	29072	broad.mit.edu	37	3	47163945	47163945	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SUSD5	26032	broad.mit.edu	37	3	33194429	33194429	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113265449	113265449	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TEKT2	27285	broad.mit.edu	37	1	36553613	36553613	+	Silent	SNP	G	T	T	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TNS1	7145	broad.mit.edu	37	2	218758200	218758200	+	Missense_Mutation	SNP	T	G	G	rs61745748	by1000genomes	TCGA-B0-5081-01	TCGA-B0-5081-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TTC37	9652	broad.mit.edu	37	5	94803695	94803695	+	Splice_Site	SNP	T	C	C	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179395676	179395676	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UBE2E2	7325	broad.mit.edu	37	3	23541185	23541185	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216405369	216405369	+	Silent	SNP	T	C	C	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
USP11	8237	broad.mit.edu	37	X	47098840	47098840	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
USP47	55031	broad.mit.edu	37	11	11964635	11964635	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10191513	10191513	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF280B	140883	broad.mit.edu	37	22	22842186	22842186	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF346	23567	broad.mit.edu	37	5	176471418	176471418	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF668	79759	broad.mit.edu	37	16	31073518	31073518	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5081-01	TCGA-B0-5081-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
