Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA12	26154	broad.mit.edu	37	2	215818763	215818763	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ACCN4	55515	broad.mit.edu	37	2	220402366	220402366	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ADAM10	102	broad.mit.edu	37	15	58938360	58938360	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43771275	43771275	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ALPP	250	broad.mit.edu	37	2	233246013	233246013	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ANKRD20A3	441425	broad.mit.edu	37	9	67938633	67938633	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32673959	32673959	+	Silent	SNP	C	A	A	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BMS1	9790	broad.mit.edu	37	10	43292488	43292488	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C11orf30	56946	broad.mit.edu	37	11	76256949	76256949	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C14orf147	171546	broad.mit.edu	37	14	34931333	34931333	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C6orf57	135154	broad.mit.edu	37	6	71289120	71289120	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CARD6	84674	broad.mit.edu	37	5	40852478	40852478	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CCNB2	9133	broad.mit.edu	37	15	59409521	59409521	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CGNL1	84952	broad.mit.edu	37	15	57816796	57816796	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CSGALNACT1	55790	broad.mit.edu	37	8	19297429	19297429	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113358405	113358405	+	Silent	SNP	C	A	A	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16911671	16911671	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DACT1	51339	broad.mit.edu	37	14	59112841	59112841	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DARS	1615	broad.mit.edu	37	2	136678172	136678172	+	Splice_Site	SNP	T	C	C	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DHRS4	10901	broad.mit.edu	37	14	24424292	24424292	+	Silent	SNP	G	T	T	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DLAT	1737	broad.mit.edu	37	11	111915861	111915861	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DLAT	1737	broad.mit.edu	37	11	111915865	111915865	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EIF2AK1	27102	broad.mit.edu	37	7	6094303	6094303	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
G6PC	2538	broad.mit.edu	37	17	41052960	41052960	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GIPC3	126326	broad.mit.edu	37	19	3586520	3586520	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GRIA1	2890	broad.mit.edu	37	5	153077687	153077687	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18688092	18688092	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186056587	186056587	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HS3ST3A1	9955	broad.mit.edu	37	17	13400032	13400032	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HSD17B11	51170	broad.mit.edu	37	4	88303419	88303419	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HTATSF1	27336	broad.mit.edu	37	X	135593367	135593367	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IRS1	3667	broad.mit.edu	37	2	227660084	227660084	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KCNJ15	3772	broad.mit.edu	37	21	39671523	39671523	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KCNQ5	56479	broad.mit.edu	37	6	73904972	73904972	+	Silent	SNP	C	G	G	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KRTAP4-1	85285	broad.mit.edu	37	17	39340475	39340477	+	Splice_Site	DEL	TGC	-	-	rs116977506	by1000genomes	TCGA-B0-5104-01	TCGA-B0-5104-01	TGC	TGC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LBX2	85474	broad.mit.edu	37	2	74725150	74725150	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LCLAT1	253558	broad.mit.edu	37	2	30785088	30785088	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MMP28	79148	broad.mit.edu	37	17	34093633	34093633	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10225010	10225010	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NAV1	89796	broad.mit.edu	37	1	201779747	201779747	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115356916	115356916	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OPHN1	4983	broad.mit.edu	37	X	67273543	67273543	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PARP1	142	broad.mit.edu	37	1	226551746	226551746	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PPM1E	22843	broad.mit.edu	37	17	57058007	57058007	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PSMC1	5700	broad.mit.edu	37	14	90730104	90730104	+	Silent	SNP	T	G	G	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RAB37	326624	broad.mit.edu	37	17	72739479	72739479	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RAPGEF2	9693	broad.mit.edu	37	4	160264133	160264133	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RND1	27289	broad.mit.edu	37	12	49251928	49251928	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RTN4IP1	84816	broad.mit.edu	37	6	107019903	107019903	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SCYL2	55681	broad.mit.edu	37	12	100704845	100704845	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SDSL	113675	broad.mit.edu	37	12	113865886	113865886	+	Silent	SNP	T	A	A	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SH2B1	25970	broad.mit.edu	37	16	28878735	28878735	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC16A8	23539	broad.mit.edu	37	22	38476983	38476983	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC17A9	63910	broad.mit.edu	37	20	61594983	61594983	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TFAP2C	7022	broad.mit.edu	37	20	55206674	55206674	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TGM5	9333	broad.mit.edu	37	15	43525807	43525807	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TSEN54	283989	broad.mit.edu	37	17	73518055	73518055	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TYK2	7297	broad.mit.edu	37	19	10475698	10475698	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UBN1	29855	broad.mit.edu	37	16	4924865	4924865	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VWF	7450	broad.mit.edu	37	12	6127762	6127762	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
WDR24	84219	broad.mit.edu	37	16	739435	739435	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
XRN2	22803	broad.mit.edu	37	20	21336744	21336744	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZC3H3	23144	broad.mit.edu	37	8	144620458	144620458	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZKSCAN1	7586	broad.mit.edu	37	7	99631582	99631582	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF215	7762	broad.mit.edu	37	11	6977426	6977426	+	Silent	SNP	C	A	A	novel	unknown	TCGA-B0-5104-01	TCGA-B0-5104-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
