Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA2	20	broad.mit.edu	37	9	139909971	139909971	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101504334	101504334	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ARID4A	5926	broad.mit.edu	37	14	58831552	58831552	+	Silent	SNP	A	C	C	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ATF7IP2	80063	broad.mit.edu	37	16	10525162	10525162	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CCNJL	79616	broad.mit.edu	37	5	159680467	159680467	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CHST7	56548	broad.mit.edu	37	X	46433704	46433704	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CLCN2	1181	broad.mit.edu	37	3	184064449	184064449	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CLVS1	157807	broad.mit.edu	37	8	62212433	62212433	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CSE1L	1434	broad.mit.edu	37	20	47682942	47682942	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CSGALNACT2	55454	broad.mit.edu	37	10	43659363	43659363	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CSPG4	1464	broad.mit.edu	37	15	75977757	75977757	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DDX28	55794	broad.mit.edu	37	16	68055772	68055772	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7701105	7701105	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FGFR3	2261	broad.mit.edu	37	4	1804696	1804696	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FKBP6	8468	broad.mit.edu	37	7	72745747	72745747	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GBA3	57733	broad.mit.edu	37	4	22820365	22820365	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPR162	27239	broad.mit.edu	37	12	6936017	6936017	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GRIN3B	116444	broad.mit.edu	37	19	1009551	1009577	+	In_Frame_Del	DEL	GCCCCCGCGGAGGCCCCACCACACTCT	-	-	rs115170969	by1000genomes	TCGA-B0-5109-01	TCGA-B0-5109-01	GCCCCCGCGGAGGCCCCACCACACTCT	GCCCCCGCGGAGGCCCCACCACACTCT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HECTD2	143279	broad.mit.edu	37	10	93258806	93258806	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HNRNPA2B1	3181	broad.mit.edu	37	7	26235512	26235512	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IKZF1	10320	broad.mit.edu	37	7	50467716	50467716	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IL17RC	84818	broad.mit.edu	37	3	9960258	9960258	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ILDR2	387597	broad.mit.edu	37	1	166908755	166908755	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IPO7	10527	broad.mit.edu	37	11	9446754	9446754	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRP5	4041	broad.mit.edu	37	11	68125161	68125161	+	Silent	SNP	C	A	A	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LUM	4060	broad.mit.edu	37	12	91502697	91502697	+	Nonsense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MAP7	9053	broad.mit.edu	37	6	136682267	136682267	+	Missense_Mutation	SNP	C	T	T	rs35107962	byFrequency	TCGA-B0-5109-01	TCGA-B0-5109-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MIOS	54468	broad.mit.edu	37	7	7635995	7635995	+	Silent	SNP	G	T	T	rs115055951	by1000genomes	TCGA-B0-5109-01	TCGA-B0-5109-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77817235	77817235	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23890215	23890215	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NPHP3	27031	broad.mit.edu	37	3	132416207	132416207	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OMD	4958	broad.mit.edu	37	9	95177538	95177538	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR7A5	26659	broad.mit.edu	37	19	14938561	14938561	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55944912	55944912	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCDHGB3	56102	broad.mit.edu	37	5	140750550	140750550	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PI4KB	5298	broad.mit.edu	37	1	151288136	151288136	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PNPLA1	285848	broad.mit.edu	37	6	36259314	36259314	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PODXL	5420	broad.mit.edu	37	7	131194328	131194328	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
POLR3B	55703	broad.mit.edu	37	12	106820975	106820975	+	Missense_Mutation	SNP	C	T	T	rs118093172	by1000genomes	TCGA-B0-5109-01	TCGA-B0-5109-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRKAG2	51422	broad.mit.edu	37	7	151262817	151262817	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RPL22L1	200916	broad.mit.edu	37	3	170585834	170585834	+	Silent	SNP	G	T	T	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SEC22B	9554	broad.mit.edu	37	1	145103928	145103928	+	Silent	SNP	G	A	A	rs2596251	byFrequency	TCGA-B0-5109-01	TCGA-B0-5109-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC39A6	25800	broad.mit.edu	37	18	33689577	33689577	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SOX9	6662	broad.mit.edu	37	17	70119701	70119701	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SPHKAP	80309	broad.mit.edu	37	2	228881360	228881360	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SPTAN1	6709	broad.mit.edu	37	9	131345086	131345086	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TPRX1	284355	broad.mit.edu	37	19	48306137	48306137	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TRIOBP	11078	broad.mit.edu	37	22	38151617	38151617	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
USH1G	124590	broad.mit.edu	37	17	72919137	72919137	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF670	93474	broad.mit.edu	37	1	247202840	247202840	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZSCAN21	7589	broad.mit.edu	37	7	99662005	99662005	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5109-01	TCGA-B0-5109-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
