Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACSS2	55902	broad.mit.edu	37	20	33508376	33508376	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ALDH1L1	10840	broad.mit.edu	37	3	125828895	125828895	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ALDH8A1	64577	broad.mit.edu	37	6	135253987	135253987	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ALKBH2	121642	broad.mit.edu	37	12	109530325	109530325	+	Silent	SNP	T	A	A	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ALKBH2	121642	broad.mit.edu	37	12	109530381	109530381	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ANKRD13C	81573	broad.mit.edu	37	1	70781173	70781173	+	Silent	SNP	G	C	C	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ATP4A	495	broad.mit.edu	37	19	36054147	36054147	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C11orf16	56673	broad.mit.edu	37	11	8948498	8948498	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C12orf57	113246	broad.mit.edu	37	12	7054995	7054995	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C17orf47	284083	broad.mit.edu	37	17	56620725	56620725	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C21orf29	54084	broad.mit.edu	37	21	45950936	45950936	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C21orf45	54069	broad.mit.edu	37	21	33642768	33642768	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120773891	120773891	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C9orf78	51759	broad.mit.edu	37	9	132594216	132594216	+	Silent	SNP	C	A	A	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201010703	201010703	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CCDC160	347475	broad.mit.edu	37	X	133379666	133379666	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CHST8	64377	broad.mit.edu	37	19	34263556	34263556	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CLIP4	79745	broad.mit.edu	37	2	29383260	29383260	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CORO2B	10391	broad.mit.edu	37	15	69006276	69006276	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CPA1	1357	broad.mit.edu	37	7	130021569	130021569	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DCAF5	8816	broad.mit.edu	37	14	69589045	69589045	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55269438	55269438	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FKBP15	23307	broad.mit.edu	37	9	115932898	115932898	+	Silent	SNP	G	T	T	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GLT8D2	83468	broad.mit.edu	37	12	104390596	104390596	+	Silent	SNP	A	G	G	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GTF2E2	2961	broad.mit.edu	37	8	30492585	30492585	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HDAC2	3066	broad.mit.edu	37	6	114279865	114279865	+	Silent	SNP	T	C	C	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
INCENP	3619	broad.mit.edu	37	11	61908476	61908476	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
INPP4B	8821	broad.mit.edu	37	4	143081662	143081662	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KCNH5	27133	broad.mit.edu	37	14	63447836	63447836	+	Silent	SNP	A	T	T	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIAA0406	9675	broad.mit.edu	37	20	36634747	36634747	+	Silent	SNP	T	C	C	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIAA0415	9907	broad.mit.edu	37	7	4824670	4824670	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIAA1383	54627	broad.mit.edu	37	1	232942950	232942950	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KRTAP5-9	3846	broad.mit.edu	37	11	71260168	71260168	+	Silent	SNP	C	A	A	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39823255	39823255	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MAGEC1	9947	broad.mit.edu	37	X	140995587	140995587	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MAN2A2	4122	broad.mit.edu	37	15	91450577	91450577	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MATR3	9782	broad.mit.edu	37	5	138643267	138643267	+	Silent	SNP	T	C	C	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MRPS26	64949	broad.mit.edu	37	20	3028493	3028493	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9077024	9077024	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NEK11	79858	broad.mit.edu	37	3	130992364	130992364	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NUP98	4928	broad.mit.edu	37	11	3797144	3797144	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR4K1	79544	broad.mit.edu	37	14	20403917	20403917	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR4K2	390431	broad.mit.edu	37	14	20344686	20344686	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR51I2	390064	broad.mit.edu	37	11	5475160	5475160	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144874839	144874839	+	Missense_Mutation	SNP	C	A	A	rs112593076	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PDE6C	5146	broad.mit.edu	37	10	95415548	95415548	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PDLIM5	10611	broad.mit.edu	37	4	95583632	95583632	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PIK3CG	5294	broad.mit.edu	37	7	106508218	106508218	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	81675111	81675111	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PPP1R9A	55607	broad.mit.edu	37	7	94881092	94881092	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PTPRK	5796	broad.mit.edu	37	6	128318044	128318045	+	Splice_Site	DNP	AC	GT	GT	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	AC	AC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RELB	5971	broad.mit.edu	37	19	45515352	45515352	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
REST	5978	broad.mit.edu	37	4	57798103	57798103	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC12A3	6559	broad.mit.edu	37	16	56904064	56904064	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC25A14	9016	broad.mit.edu	37	X	129499647	129499647	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SPTBN5	51332	broad.mit.edu	37	15	42147094	42147094	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TACR1	6869	broad.mit.edu	37	2	75278449	75278450	+	Missense_Mutation	DNP	GT	TA	TA	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	GT	GT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TRIM16	10626	broad.mit.edu	37	17	15516051	15516051	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TSEN15	116461	broad.mit.edu	37	1	184023905	184023905	+	Silent	SNP	C	A	A	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179587658	179587658	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
USP50	373509	broad.mit.edu	37	15	50833303	50833303	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF561	93134	broad.mit.edu	37	19	9720930	9720930	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-B0-5116-01	TCGA-B0-5116-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
