Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ALG12	79087	broad.mit.edu	37	22	50303615	50303615	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73651718	73651718	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AMHR2	269	broad.mit.edu	37	12	53819616	53819616	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C9orf66	157983	broad.mit.edu	37	9	214612	214612	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201047117	201047117	+	Silent	SNP	C	A	A	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CCDC157	550631	broad.mit.edu	37	22	30766353	30766353	+	Silent	SNP	C	A	A	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CD22	933	broad.mit.edu	37	19	35831892	35831892	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CD300E	342510	broad.mit.edu	37	17	72613604	72613604	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CMTM1	113540	broad.mit.edu	37	16	66612797	66612797	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CNOT1	23019	broad.mit.edu	37	16	58622799	58622799	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COLEC12	81035	broad.mit.edu	37	18	480713	480713	+	Silent	SNP	G	T	T	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DCAF13	25879	broad.mit.edu	37	8	104444966	104444966	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DDR1	780	broad.mit.edu	37	6	30866812	30866812	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DGKH	160851	broad.mit.edu	37	13	42729429	42729429	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DISP1	84976	broad.mit.edu	37	1	223178702	223178702	+	Silent	SNP	T	C	C	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DNMT3A	1788	broad.mit.edu	37	2	25467122	25467122	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EMILIN1	11117	broad.mit.edu	37	2	27305157	27305157	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FLT4	2324	broad.mit.edu	37	5	180047687	180047687	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GALNT7	51809	broad.mit.edu	37	4	174223301	174223301	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIAA0776	23376	broad.mit.edu	37	6	96997453	96997453	+	Silent	SNP	A	G	G	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107763582	107763582	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LAMC1	3915	broad.mit.edu	37	1	183086460	183086460	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRCH2	57631	broad.mit.edu	37	X	114400841	114400841	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
M6PR	4074	broad.mit.edu	37	12	9098098	9098098	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MAP3K15	389840	broad.mit.edu	37	X	19410163	19410163	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MIA3	375056	broad.mit.edu	37	1	222826645	222826645	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MS4A14	84689	broad.mit.edu	37	11	60164109	60164109	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	20124911	20124911	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NUP133	55746	broad.mit.edu	37	1	229602504	229602504	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55569221	55569221	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCDHB14	56122	broad.mit.edu	37	5	140604554	140604554	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PDZD8	118987	broad.mit.edu	37	10	119049791	119049791	+	Silent	SNP	C	A	A	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PFKFB1	5207	broad.mit.edu	37	X	54982603	54982603	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PFKM	5213	broad.mit.edu	37	12	48516579	48516579	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PIK3CA	5290	broad.mit.edu	37	3	178952088	178952088	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PLA2R1	22925	broad.mit.edu	37	2	160813103	160813103	+	Silent	SNP	A	G	G	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PPHLN1	51535	broad.mit.edu	37	12	42748967	42748967	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RP1	6101	broad.mit.edu	37	8	55539331	55539331	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RUNDC2A	84127	broad.mit.edu	37	16	12136850	12136850	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SERPINF2	5345	broad.mit.edu	37	17	1648687	1648687	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SFRP4	6424	broad.mit.edu	37	7	37949276	37949276	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC18A1	6570	broad.mit.edu	37	8	20038369	20038369	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC22A10	387775	broad.mit.edu	37	11	63057715	63057715	+	Silent	SNP	C	G	G	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC2A14	144195	broad.mit.edu	37	12	7967026	7967026	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC2A3	6515	broad.mit.edu	37	12	8074123	8074123	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SMCR7L	54471	broad.mit.edu	37	22	39908345	39908345	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SMG6	23293	broad.mit.edu	37	17	1964808	1964808	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SNRNP200	23020	broad.mit.edu	37	2	96962717	96962717	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SNX27	81609	broad.mit.edu	37	1	151611585	151611585	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
STXBP5	134957	broad.mit.edu	37	6	147685200	147685200	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SUV39H1	6839	broad.mit.edu	37	X	48557408	48557408	+	Silent	SNP	C	A	A	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TEX11	56159	broad.mit.edu	37	X	69942475	69942475	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TMC3	342125	broad.mit.edu	37	15	81633742	81633742	+	Silent	SNP	A	G	G	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179476401	179476401	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
USHBP1	83878	broad.mit.edu	37	19	17366335	17366335	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UTP14A	10813	broad.mit.edu	37	X	129063453	129063453	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
WDR35	57539	broad.mit.edu	37	2	20138069	20138069	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF680	340252	broad.mit.edu	37	7	63981785	63981785	+	Silent	SNP	A	G	G	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF708	7562	broad.mit.edu	37	19	21492050	21492050	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF782	158431	broad.mit.edu	37	9	99580322	99580322	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5120-01	TCGA-B0-5120-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
