Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACSL4	2182	hgsc.bcm.edu	37	X	108924288	108924288	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ADAM29	11086	hgsc.bcm.edu	37	4	175896768	175896768	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
APC	324	hgsc.bcm.edu	37	5	112173851	112173851	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
APH1A	51107	hgsc.bcm.edu	37	1	150240404	150240404	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ARHGAP28	79822	hgsc.bcm.edu	37	18	6859884	6859884	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ARHGAP29	9411	hgsc.bcm.edu	37	1	94654418	94654418	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ARHGEF10	9639	hgsc.bcm.edu	37	8	1812549	1812549	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ARID2	196528	hgsc.bcm.edu	37	12	46233179	46233179	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C12orf11	55726	hgsc.bcm.edu	37	12	27077413	27077413	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C20orf118	140711	hgsc.bcm.edu	37	20	35507457	35507457	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C4A	720	hgsc.bcm.edu	37	6	31962395	31962396	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C5orf47	133491	hgsc.bcm.edu	37	5	173426710	173426710	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CCDC18	343099	hgsc.bcm.edu	37	1	93712442	93712442	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CHMP2B	25978	hgsc.bcm.edu	37	3	87302584	87302584	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
COL15A1	1306	hgsc.bcm.edu	37	9	101818627	101818627	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
COL22A1	169044	hgsc.bcm.edu	37	8	139845296	139845296	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
COL6A3	1293	hgsc.bcm.edu	37	2	238277320	238277320	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CSMD3	114788	hgsc.bcm.edu	37	8	113966984	113966984	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DDX56	54606	hgsc.bcm.edu	37	7	44612298	44612298	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DPYSL3	1809	hgsc.bcm.edu	37	5	146798117	146798117	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ETFB	2109	hgsc.bcm.edu	37	19	51857732	51857732	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAM194A	131831	hgsc.bcm.edu	37	3	150384662	150384662	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FASTKD3	79072	hgsc.bcm.edu	37	5	7867988	7867988	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FBN2	2201	hgsc.bcm.edu	37	5	127664442	127664442	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FGB	2244	hgsc.bcm.edu	37	4	155491742	155491742	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HCN1	348980	hgsc.bcm.edu	37	5	45262590	45262590	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
JAK1	3716	hgsc.bcm.edu	37	1	65330477	65330479	+	In_Frame_Del	DEL	TTG	TTG	-	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	TTG	TTG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
JAK2	3717	hgsc.bcm.edu	37	9	5070025	5070025	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KCNT2	343450	hgsc.bcm.edu	37	1	196295870	196295870	+	Silent	SNP	G	G	T	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KRAS	3845	hgsc.bcm.edu	37	12	25380238	25380238	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LRCH1	23143	hgsc.bcm.edu	37	13	47303069	47303069	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MAK16	84549	hgsc.bcm.edu	37	8	33354168	33354168	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MAP4K4	9448	hgsc.bcm.edu	37	2	102460601	102460601	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MMP8	4317	hgsc.bcm.edu	37	11	102587063	102587063	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NDUFV3	4731	hgsc.bcm.edu	37	21	44323941	44323941	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NHEDC2	133308	hgsc.bcm.edu	37	4	103988700	103988700	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR5M8	219484	hgsc.bcm.edu	37	11	56258051	56258051	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PCDHB6	56130	hgsc.bcm.edu	37	5	140530050	140530050	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PDE1B	5153	hgsc.bcm.edu	37	12	54970410	54970410	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PDE3A	5139	hgsc.bcm.edu	37	12	20792854	20792854	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PDZD2	23037	hgsc.bcm.edu	37	5	32088407	32088407	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PLCB1	23236	hgsc.bcm.edu	37	20	8755294	8755294	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PLD5	200150	hgsc.bcm.edu	37	1	242383404	242383404	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
POLI	11201	hgsc.bcm.edu	37	18	51809296	51809296	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PRKCA	5578	hgsc.bcm.edu	37	17	64800059	64800059	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RAB8B	51762	hgsc.bcm.edu	37	15	63541904	63541904	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RARRES1	5918	hgsc.bcm.edu	37	3	158415529	158415529	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SETD2	29072	hgsc.bcm.edu	37	3	47164342	47164343	+	Frame_Shift_Del	DEL	GA	GA	-	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	GA	GA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SV2B	9899	hgsc.bcm.edu	37	15	91809889	91809889	+	Silent	SNP	C	C	A	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SYTL2	54843	hgsc.bcm.edu	37	11	85459330	85459330	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TIMELESS	8914	hgsc.bcm.edu	37	12	56816773	56816773	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
UCHL1	7345	hgsc.bcm.edu	37	4	41262789	41262789	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
VHL	7428	hgsc.bcm.edu	37	3	10191507	10191507	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
VHL	7428	hgsc.bcm.edu	37	3	10191572	10191572	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF467	168544	hgsc.bcm.edu	37	7	149468119	149468119	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZRANB3	84083	hgsc.bcm.edu	37	2	135966529	135966529	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B0-5402-01	TCGA-B0-5402-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
